lowQualScore : 2 1 1 444444 2222222 111 11 111 333 1
lowQualScore : 1 0 1 000000 7777777 555 6 0 6 8 88 444 333 6 4 2 6 2 1 2 1 1 222 8
lowQualScore : . . . ...... ....... ... . . . . .. ... ... . . . . . . . . . ... .
lowQualScore : 2 5 4 888888 8888888 222 7 8 4 0 00 000 666 0 2 1 3 0 9 9 7 6 999 6
consensus : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGCGTATAA----NAATATGTTCAGC---TT--GCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAATC-TTTACG---AGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACTTACTGTA
Reference ( gi|35007 ) : AAAACTATATGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTCTGTGCGTATAA----TGATATGTTCAGC---TA--GCACACCTCGTG--CTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAATG-TTTACG---AGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACTTACTGTA
gi|35008 : AAAAATATATACCAGCTCTAATCAGCGTCAACAGGCAAAGCAAGTTATGTGTGTATAA----C-ATATGTTCAGC---TT--GCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAATC-TTTATG---AGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACTTACTGTA
gi|35009 : AAAAATATAAGACAGCTCTAATCAGCGTCAACAGGCAAAGCAATTTATGCGCGTATAA----AAATATGCTCAGC---TT--GCACACCTCGTG--TTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAATC-GTTACG---AGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACTTACTGTA
gi|35010 : AAAA--ATAAGCCAGCACTAGTGGGCATTAACAGGCAAAGCAAGTTATGTGTGTATAA----AAATATGTTTAGC---TT--GCACACCTTGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAATC-TTTATG---AGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCTTACTGTA
gi|35011 : aaAAATATAAGCCAGCTCTAGTCAGCGTTAACAGGCAAAGCAAGTTTTGTGCGTATAA-----AATATGTTCAGCATCTT--GCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAATC-TTGACG---AGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACTTACTGTA
gi|35012 : CAGCCAAAACAAGTATTGTGCGTATAGAGATTGATAT-TCCAAT---TAATGTACAGCTCGTGTATTGT--GGAATC-G
gi|35013 : ACGTTTTGTA--TTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGG---AATCATTCCGGAT
gi|35014 : tatgtacattttgtataaatatttgtaatatAGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|35015 : CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGG---CTT-CTGTA
gi|35016 : CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---tgta
gi|35018 : CCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|35021 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|35023 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|35025 : CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|35020 : CAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT
gi|35022 : CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGTTA
gi|35026 : CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|35024 : CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|35027 : CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|35028 : CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT
gi|35029 : AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|35030 : AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|35031 : -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT
gi|35032 : A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|35019 : A-CGCCACTTGCAGT----AGGA-G-TCA---CAGTCAAGATGCGTAGACTGG----TTACTGTA
gi|35033 : ccaaacttctatatA-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|35017 : TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT
gi|35034 : cccaaacttttttattgacttAAT-TGA---CAGTCAAGATACGTAGACTGGCTACT
gi|35035 : AG-TAA---CAGTCAAGATACGTAGACTGGCTACT
Alignments
lowQualScore : 11111 111111
lowQualScore : 1 1 44444 6 77 5 222222 77 5 3 6 6 1 2 6 1 1 1 1 222 2
lowQualScore : . . ..... . .. . ...... .. . . . . . . . . . . . ... .
lowQualScore : 4 9 33333 6 99 7 333333 99 7 7 7 7 4 0 0 9 8 7 5 888 9
consensus : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Reference ( family-655 ) : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAANAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
gi|35007 : AAAACTATATGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTCTGTGC-----GTATAATGAT--ATGTT-CAGC---T--AGCACACCTCGTG--CTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-GTTTACGAGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACT-TACTGTA
gi|35008 : AAAAATATATACCAGCTCTAATCAGCGTCAACAGGCAAAGCAAGTTATGTGT-----GTATAACA-T--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAAT-CTTTATGAGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACT-TACTGTA
gi|35009 : AAAAATATAAGACAGCTCTAATCAGCGTCAACAGGCAAAGCAATTTATGCGC-----GTATAAAAAT--ATGCT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAAT-CGTTACGAGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACT-TACTGTA
gi|35010 : AAAAAAATAAGCCAGCACTAGTGGGCATTAACAGGCAAAGCAAGTTATGTGT-----GTATAAAAAT--ATGTT-TAGC---T--TGCACACCTTGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAAT-CTTTATGAGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCT-TACTGTA
gi|35011 : AAATATAAGCCAGCTCTAGTCAGCGTTAACAGGCAAAGCAAGTTTTGTGC-----GTATAA-AAT--ATGTT-CAGCATCT--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTGACGAGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACT-TACTGTA
gi|35012 : CAGCCAAAACAAGTATTGTGC-----GTATAGAGATTGATATTCCAAT---TAATGTACAGCTCGTGTATTGT--GGAATC-G
gi|35013 : TATGTACATTTTGTATAAATAT--TTGT---AA-------TATACGTTTTGTA--TTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGGAATCATTCCGGAT
gi|35014 : AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|35015 : CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGGCTTCTGTA-TGTA
gi|35016 : CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---
gi|35017 : TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT-
gi|35018 : cccaaacttttttattgacttCCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|35019 : A-CGCCACTTGCAGT----AGGA-G-TCA---CAGTCAAGATGCGTAGACTGG----T-TACTGTA
gi|35020 : ccaaacttctatatCAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT-
gi|35021 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|35022 : CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGT-TA
gi|35023 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|35024 : CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|35025 : CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|35026 : CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|35027 : CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|35028 : CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT-
gi|35029 : AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|35030 : AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|35031 : -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT-
gi|35032 : A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|35033 : A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|35034 : AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT-
gi|35035 : AG-TAA---CAGTCAAGATACGTAGACTGGCTACT-
Alignments
lowQualScore : 11111 111111
lowQualScore : 1 1 44444 5 77 5 222222 77 5 3 6 6 1 2 6 1 1 1 1 222 2
lowQualScore : . . ..... . .. . ...... .. . . . . . . . . . . . ... .
lowQualScore : 4 9 33333 0 99 7 333333 99 7 7 7 7 4 0 0 9 8 7 5 888 9
consensus : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Reference ( family-655 ) : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
gi|35007 : AAAACTATATGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTCTGTGC-----GTATAATGAT--ATGTT-CAGC---T--AGCACACCTCGTG--CTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-GTTTACGAGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACT-TACTGTA
gi|35008 : AAAAATATATACCAGCTCTAATCAGCGTCAACAGGCAAAGCAAGTTATGTGT-----GTATAACA-T--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAAT-CTTTATGAGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACT-TACTGTA
gi|35009 : AAAAATATAAGACAGCTCTAATCAGCGTCAACAGGCAAAGCAATTTATGCGC-----GTATAAAAAT--ATGCT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAAT-CGTTACGAGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACT-TACTGTA
gi|35010 : AAAAAAATAAGCCAGCACTAGTGGGCATTAACAGGCAAAGCAAGTTATGTGT-----GTATAAAAAT--ATGTT-TAGC---T--TGCACACCTTGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAAT-CTTTATGAGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCT-TACTGTA
gi|35011 : AAATATAAGCCAGCTCTAGTCAGCGTTAACAGGCAAAGCAAGTTTTGTGC-----GTATAAAA-T--ATGTT-CAGCATCT--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTGACGAGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACT-TACTGTA
gi|35012 : CAGCCAAAACAAGTATTGTGC-----GTATAGAGATTGATATTCCAAT---TAATGTACAGCTCGTGTATTGT--GGAATC-G
gi|35013 : TATGTACATTTTGTATAAATAT--TTGT---AA-------TATACGTTTTGTA--TTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGGAATCATTCCGGAT
gi|35014 : AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|35015 : CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGGCTTCTGTA-TGTA
gi|35016 : CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---
gi|35017 : TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT-
gi|35018 : cccaaacttttttattgacttCCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|35019 : A-CGCCACTTGCAGT----AGGA-G-TCA---CAGTCAAGATGCGTAGACTGG----T-TACTGTA
gi|35020 : ccaaacttctatatCAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT-
gi|35021 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|35022 : CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGT-TA
gi|35023 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|35024 : CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|35025 : CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|35026 : CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|35027 : CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|35028 : CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT-
gi|35029 : AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|35030 : AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|35031 : -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT-
gi|35032 : A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|35033 : A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|35034 : AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT-
gi|35035 : AG-TAA---CAGTCAAGATACGTAGACTGGCTACT-
blockSeqs : T A ATTTT A TG C ATCT TA C C T G A T T A G A T ACA G
blockSeqs : A A . A . . TAA . . C . . A . T . . . . . .
blockSeqs : A A . A . . T . . T . . T . T . . . . . .
blockSeqs : A T . A . . T . . T . . G . . . . . . . .
blockSeqs : T . . . . T . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . .
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blockSeqs : . . . .
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blockSeqs : .
blockSeqCons :
originalCons : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
finalCons : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Alignments
lowQualScore : 11111 111111
lowQualScore : 1 1 44444 5 77 5 222222 77 5 3 6 6 1 2 6 1 1 1 1 222 2
lowQualScore : . . ..... . .. . ...... .. . . . . . . . . . . . ... .
lowQualScore : 4 9 33333 0 99 7 333333 99 7 7 7 7 4 0 0 9 8 7 5 888 9
consensus : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Reference ( family-655 ) : AAAAATATAAGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTATGTGC-----GTATAAAAAT--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
gi|35007 : AAAACTATATGCCAGCTCTAGTCAGCGTCAACAGGCAAAGCAAGTTCTGTGC-----GTATAATGAT--ATGTT-CAGC---T--AGCACACCTCGTG--CTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-GTTTACGAGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACT-TACTGTA
gi|35008 : AAAAATATATACCAGCTCTAATCAGCGTCAACAGGCAAAGCAAGTTATGTGT-----GTATAACA-T--ATGTT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAAT-CTTTATGAGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACT-TACTGTA
gi|35009 : AAAAATATAAGACAGCTCTAATCAGCGTCAACAGGCAAAGCAATTTATGCGC-----GTATAAAAAT--ATGCT-CAGC---T--TGCACACCTCGTG--TTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAAT-CGTTACGAGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACT-TACTGTA
gi|35010 : AAAAAAATAAGCCAGCACTAGTGGGCATTAACAGGCAAAGCAAGTTATGTGT-----GTATAAAAAT--ATGTT-TAGC---T--TGCACACCTTGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAAT-CTTTATGAGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCT-TACTGTA
gi|35011 : AAATATAAGCCAGCTCTAGTCAGCGTTAACAGGCAAAGCAAGTTTTGTGC-----GTATAAAA-T--ATGTT-CAGCATCT--TGCACACCTCGTG--TTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTGACGAGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACT-TACTGTA
gi|35012 : CAGCCAAAACAAGTATTGTGC-----GTATAGAGATTGATATTCCAAT---TAATGTACAGCTCGTGTATTGT--GGAATC-G
gi|35013 : TATGTACATTTTGTATAAATAT--TTGT---AA-------TATACGTTTTGTA--TTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGGAATCATTCCGGAT
gi|35014 : AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|35015 : CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGGCTTCTGTA-TGTA
gi|35016 : CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---
gi|35017 : TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT-
gi|35018 : cccaaacttttttattgacttCCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|35019 : A-CGCCACTTGCAGT----AGGA-G-TCA---CAGTCAAGATGCGTAGACTGG----T-TACTGTA
gi|35020 : ccaaacttctatatCAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT-
gi|35021 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|35022 : CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGT-TA
gi|35023 : CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|35024 : CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|35025 : CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|35026 : CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|35027 : CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|35028 : CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT-
gi|35029 : AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|35030 : AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|35031 : -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT-
gi|35032 : A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|35033 : A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|35034 : AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT-
gi|35035 : AG-TAA---CAGTCAAGATACGTAGACTGGCTACT-