lowQualScore : 11 666666666666666666666 22222222222222222
lowQualScore : 1 33 77 1 666 1 88888888 1 66666 3 1 444444 2 1 22 888888888888888888888 00000000000000000 333 6 1
lowQualScore : . .. .. . ... . ........ . ..... . . ...... . . .. ..................... ................. ... . .
lowQualScore : 8 00 66 6 666 6 00000000 5 99999 0 5 111111 2 9 00 999999999999999999999 44444444444444444 000 0 7
consensus : TTTTA-AAA--A--GC-AAGACG-AAT-TTTC--G-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG---------------------CAT-----------------C---TCCTTCCCATCAGGT-ACTATCCCA
Reference ( gi|145181 ) : TTTTA-AAA--A--GC-AAGATG-AAT-TTTC--A-----GAT-A-----TAAA-C-TGGC------TAAACATGTGACGGATA--TTACGGACAG---------------------CAT-----------------C---TCCTTCCCATCAGAT-ACTATCCCA
gi|145184 : TTTTA-AAA--A--GC-AAGACG-AAT-TTTC--G-----GAT-A-----TAAA-C-TGGC------TAAAC-----ACGGATA--TTACGGACTG---------------------CAT-----------------C---TCCTGTCCATCAGGT-ACTATCCCA
gi|145183 : TTTTA-AAAAAA--GC-AAGACG-AAT-TTTC--A-----GAT-A-----TAAA-T-TGGC------TAAACACGTGATGAATA--TTACGGCCAG---------------------TAT-----------------C---TCATTCCTATCAGTT-ACTATCC
gi|145185 : TTTTA-AAATAA--GC-AAGACA-TAT-ACTC--A-----GAT-A-----CAAA-C-TGGC------TAAACATGTGACAGATA--TTAAGGACAG---------------------CAT-----------------C---TCCTTCCCATCAGGA-ACTTTCCCA
gi|145186 : TTTTA-AAA--AT-GT-AAGACG-AAT-TTTC--G-----AAT-A-----TATA-C-TGGC------TAAACACGTGGCGAATA--TTACGGACAGCATATAATTGTTGC-------CAT-----------------C---TCCTTCCCATCAGAT-ACTATCCC
gi|145182 : tTCTTA-AAATAA--GC-AAGACA-AAT-TTTT--G-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGAATA--TTACGGACAG---------------------CAT-----------------T---GCCAACTCATCAGGT-ACTATCCCA
gi|145188 : TTTTA-AAAA-A--GC-AAGATG-AAT-ATTC--A-----GAT-A-----TATA-C-TGGC------TAAACATATGACAAATA--TTATGGACAGCTTATAATTGTTGT-------CAT-----------------C---TCCTTCCCATTTGGT-ACCATCCCA
gi|145190 : tTTTTAGAAA--A--GC-AA-------T-TTTT--G-----AAT-A-----TAAAAC-TGGC------TAAACATGTGACGAATA--TTACGGACAGCATATATTGTTGTCAT-----CAT-----------------C---TCCTTCCCATCAGGT-ACTATCACA
gi|145187 : tTTTTA-AAA--AAAGC-AAGACG-AATATTTT--ATATACGAT-A-----TATA-C-TGGC------TAAACACGTGATGAATA--TTACGGACAGCATAATATATATCATTGCTGTCAT-----------------C---TCCTTCCCATCAGGT-GCTAGCCCA
gi|145192 : TTTTA-AAA--AA-GA-GAGACG-AAA-TTTC--G-----AAT-A-----TATA-C-TGGC------TAAACACGTGACGGATA--TTATGGGCAG---------------------CATATAATTGTTGA------CATATCCTTCCCATC-GATCACTAGTCCA
gi|145193 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTTT--G-----GAT-A-----TAAA-C-TGGC--------------------------TACGGACAG---------------------CAT-----------------C---TCGTTCCCGTCAGGT-ACTAT
gi|145194 : TTTTA-AAA--A--GC-ATGACA-AAT-TTTT--G-----GAT-A-----TAAA-C-CCGC------TA--------------------CGGACAG---------------------CAT-----------------C---TCCTTCCCATCAGGT-ACTCTCCCA
gi|145195 : TTTTA-AAA--A--ATTAAGACG-AAT-TTTC--A-----GAT-A-----TAAA-C-TGGA------TAAACACGTGATGG
gi|145196 : tTTTTA-AAA--AA-GC-CAGACACAAT-TTTT--T-----AAT-A-----TAAA-C-CGGC------TA--------------------CGGACAG---------------------CAT-----------------C---TCCATTCCATCAGGT-ACTATCC
gi|145199 : tTTTTA-AAA--G--TC-AAGACG-AAT-TTTT--G-----GAT-AGGCTTTAAA-C-CGGC------T---------ACGGACA--GTA-GGCC-----------------------TAC-----------------C---TCCTTCCCATCAGGT-ATT
gi|145197 : TTTTA-AAA--A--GC-AAGACA-AAT-TTGC--G-----TAT-A-----TAAA-C-TGGC------TAAACACATGA--GGTA--CTA
gi|145189 : TTTTA-AAAAAA--GC-AAGACA-AAT-TTGC--G-----TAT-A-----TAAA-C-TGGC------TAAACACATGAGGTATA--
gi|145201 : TTTTA-AAA--A--A--AAGACA-AAT-TTCC--G-----GAT-AAAAA-TAAAAC-AAGC------TAAACATGTGATGCATA--TTA
gi|145200 : TTTTA-AAAA-A--GC-AAGACA-AAT-TTTC--G-----GATAA-----AAAA-C-TGGC------TAAA
gi|145203 : tTA-AAA--A--GC-AAGACA-AAT-TTTT--G-----GAT-------TAAA-C-TGAC------TAAACACGTGACGAATA--TTACAGACAA---------------------CAT-----------------C---TCCTTCCTATCAGGT-ACTATCCCA
gi|145202 : taA-AAA--A--GC-AAGACG-AAT-TTTC--C-----GAT-T-----TAAA-C-TGGC------TAAACATGTGACGAATATTTTACGGACAG---------------------CAT-----------------C---TCCATCCCATCAGCA-ACTTTCCCA
gi|145191 : ttaaaA-AAA--A--GC-AAGACA-AAT-TTTC--A-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTAC
gi|145198 : tttaaaA-AAA--A--GC-AA------AT-TTTA--G-----GGG-A-----AAAA-AATAGC------TTAACATGTGATGGATA--ATA------------------------------T-----------------C---TTGTTTCCATCAGGT-ACTATCCCA
gi|145205 : tttcaaAA--A--GC-AAGACG-AAT-TTTC--G-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TAACGGACAT---------------------CAT-----------------C---TCCTTCCCATCAGGT-ACTATCCCA
gi|145206 : aac-AAGATG-AAT-TTTC--A-----GAT-A-----TGAA-C-TGGC------TAATTATGTGACGAATA--TTACAGACAG---------------------CAT-----------------C---TCCTTCCCATCAGGT-ACTATCCCA
gi|145204 : aaaaaattacga-AAAAAG-AAT-TTTAGAA-----GAT-A-----TA---C-TGGC------TAAACATGTGATGAATA--TTACAGACAGCATATAATTGTTGT-------CAT-----------------T---TCCTTCCCATCAGTT-ACTATCCCA
gi|145207 : taaca-----GAT-A-----TAG--C-TGGC------TAAAAACGTGACGAGTA--TTACGGACAGCATATAATTGTTGT-------CAT-----------------C---TCCTTCCCATCAGGT-ACTGTCCCA
gi|145208 : aaactaacaaaaatattg-A-----TAAA-T-TAGCATAAATTAAACATGTGACGAATA--TTACGGACAGA--------------------CAT-----------------C---TCATTCCCATCAGGT-ACTATCCCA
gi|145209 : ------TAAACATGAGACAGTTA--TTACAGACAG---------------------CATATAATTGTTGTCATCATC---TCCTTCCCGTCAGGT-ACTATCCCA
gi|145210 : AAGCACGCGACGAATA--TTACGGACAG---------------------CAT-----------------C---TCCTTCCTATCAGGT-ACTATCCCA
Alignments
lowQualScore : 11 666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 22 77 1 1 1 33333 1 66666 2 1 444444 0 1 22 111111111111111111111111111111111111111111111111111111111 222
lowQualScore : . .. .. . . . ..... . ..... . . ...... . . .. ......................................................... ...
lowQualScore : 7 55 33 5 5 5 77777 4 66666 9 4 000000 4 5 00 666666666666666666666666666666666666666666666666666666666 999
consensus : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
Reference ( family-649 ) : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145181 : TTTTA-AAA--A--GC-AAGATG-AAT-TTTCA-----GAT-A-----TAAA-C-TGGC------TAAACATGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGATACTATCCCA
gi|145182 : TCTTA-AAATAA--GC-AAGACA-AAT-TTTTG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGAATA--TTACGGACAG----------------C---------------------AT-----------------T---GCCAACTCATCAGGTACTATCCCA
gi|145183 : TTTTA-AAAAAA--GC-AAGACG-AAT-TTTCA-----GAT-A-----TAAA-T-TGGC------TAAACACGTGATGAATA--TTACGGCCAG----------------T---------------------AT-----------------C---TCATTCCTATCAGTTACTATCC
gi|145184 : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAAC-----ACGGATA--TTACGGACTG----------------C---------------------AT-----------------C---TCCTGTCCATCAGGTACTATCCCA
gi|145185 : TTTTA-AAATAA--GC-AAGACA-TAT-ACTCA-----GAT-A-----CAAA-C-TGGC------TAAACATGTGACAGATA--TTAAGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGAACTTTCCCA
gi|145186 : TTTTA-AAA--AT-GT-AAGACG-AAT-TTTCG-----AAT-A-----TATA-C-TGGC------TAAACACGTGGCGAATA--TTACGGACAGCATATAATTGTTGC--C---------------------AT-----------------C---TCCTTCCCATCAGATACTATCCC
gi|145187 : tTTTTA-AAA--AAAGC-AAGACG-AATATTTTATATACGAT-A-----TATA-C-TGGC------TAAACACGTGATGAATA--TTACGGACAG----------------CATAATATATATCATTGCTGTCAT-----------------C---TCCTTCCCATCAGGTGCTAGCCCA
gi|145188 : TTTTA-AAAA-A--GC-AAGATG-AAT-ATTCA-----GAT-A-----TATA-C-TGGC------TAAACATATGACAAATA--TTATGGACAGCTTATAATTGTTGT--C---------------------AT-----------------C---TCCTTCCCATTTGGTACCATCCCA
gi|145189 : tTTTTA-AAAAAA--GC-AAGACA-AAT-TTGCG-----TAT-A-----TAAA-C-TGGC------TAAACACATGAGGTATA--
gi|145190 : TTTTAGAAA--A--GC-AA-------T-TTTTG-----AAT-A-----TAAAAC-TGGC------TAAACATGTGACGAATA--TTACGGACAGCATATATTGTTGTCATC---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCACA
gi|145191 : tA-AAA--A--GC-AAGACA-AAT-TTTCA-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTAC
gi|145192 : tttaaaTTTTA-AAA--AA-GA-GAGACG-AAA-TTTCG-----AAT-A-----TATA-C-TGGC------TAAACACGTGACGGATA--TTATGGGCAG----------------C---------------------ATATAATTGTTGA------CATATCCTTCCCATCGATCACTAGTCCA
gi|145193 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTTTG-----GAT-A-----TAAA-C-TGGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCGTTCCCGTCAGGTACTAT
gi|145194 : TTTTA-AAA--A--GC-ATGACA-AAT-TTTTG-----GAT-A-----TAAA-C-CCGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTCTCCCA
gi|145195 : TTTTA-AAA--A--ATTAAGACG-AAT-TTTCA-----GAT-A-----TAAA-C-TGGA------TAAACACGTGATGG
gi|145196 : tTTTTA-AAA--AA-GC-CAGACACAAT-TTTTT-----AAT-A-----TAAA-C-CGGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCCATTCCATCAGGTACTATCC
gi|145197 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTGCG-----TAT-A-----TAAA-C-TGGC------TAAACACATGA--GGTA--CTA
gi|145198 : TTTCA-AAA--A-----AAG-CA-AAT-TTTAG-----GGG-A-----AAAA-AATAGC------TTAACATGTGATGGATA--ATA----------------------------------------------T-----------------C---TTGTTTCCATCAGGTACTATCCCA
gi|145199 : TTTTA-AAA--G--TC-AAGACG-AAT-TTTTG-----GAT-AGGCTTTAAA-C-CGGC------T---------ACGGACA--GTA-GGCC------------------T---------------------AC-----------------C---TCCTTCCCATCAGGTATT
gi|145200 : TTTTA-AAAA-A--GC-AAGACA-AAT-TTTCG-----GATAA-----AAAA-C-TGGC------TAAA
gi|145201 : tTTTTA-AAA--A--A--AAGACA-AAT-TTCCG-----GAT-AAAAA-TAAAAC-AAGC------TAAACATGTGATGCATA--TTA
gi|145202 : A-AAA--A--GC-AAGACG-AAT-TTTCC-----GAT-T-----TAAA-C-TGGC------TAAACATGTGACGAATATTTTACGGACAG----------------C---------------------AT-----------------C---TCCATCCCATCAGCAACTTTCCCA
gi|145203 : ttaaaTA-AAA--A--GC-AAGACA-AAT-TTTTG-----GAT-------TAAA-C-TGAC------TAAACACGTGACGAATA--TTACAGACAA----------------C---------------------AT-----------------C---TCCTTCCTATCAGGTACTATCCCA
gi|145204 : ta-AAAAAG-AAT-TTTAG-----AAG-A-----TATA-C-TGGC------TAAACATGTGATGAATA--TTACAGACAGCATATAATTGTTGT--C---------------------AT-----------------T---TCCTTCCCATCAGTTACTATCCCA
gi|145205 : taacaAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TAACGGACAT----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145206 : aac-AAGATG-AAT-TTTCA-----GAT-A-----TGAA-C-TGGC------TAATTATGTGACGAATA--TTACAGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145207 : aaaaaattacgaTTG-----GAT-A-----TAG--C-TGGC------TAAAAACGTGACGAGTA--TTACGGACAGCATATAATTGTTGT--C---------------------AT-----------------C---TCCTTCCCATCAGGTACTGTCCCA
gi|145208 : aaactaacaaaaata-A-----TAAA-T-TAGCATAAATTAAACATGTGACGAATA--TTACGGACAGA---------------C---------------------AT-----------------C---TCATTCCCATCAGGTACTATCCCA
gi|145209 : ------TAAACATGAGACAGTTA--TTACAGACAG----------------C---------------------ATATAATTGTTGTCATCATC---TCCTTCCCGTCAGGTACTATCCCA
gi|145210 : AAGCACGCGACGAATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCTATCAGGTACTATCCCA
Alignments
lowQualScore : 11 666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 22 77 1 1 1 33333 1 66666 2 1 444444 0 1 22 111111111111111111111111111111111111111111111111111111111 222
lowQualScore : . .. .. . . . ..... . ..... . . ...... . . .. ......................................................... ...
lowQualScore : 7 55 33 5 5 5 77777 4 66666 9 4 000000 4 5 00 666666666666666666666666666666666666666666666666666666666 999
consensus : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
Reference ( family-649 ) : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145181 : TTTTA-AAA--A--GC-AAGATG-AAT-TTTCA-----GAT-A-----TAAA-C-TGGC------TAAACATGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGATACTATCCCA
gi|145182 : TCTTA-AAATAA--GC-AAGACA-AAT-TTTTG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGAATA--TTACGGACAG----------------C---------------------AT-----------------T---GCCAACTCATCAGGTACTATCCCA
gi|145183 : TTTTA-AAAAAA--GC-AAGACG-AAT-TTTCA-----GAT-A-----TAAA-T-TGGC------TAAACACGTGATGAATA--TTACGGCCAG----------------T---------------------AT-----------------C---TCATTCCTATCAGTTACTATCC
gi|145184 : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAAC-----ACGGATA--TTACGGACTG----------------C---------------------AT-----------------C---TCCTGTCCATCAGGTACTATCCCA
gi|145185 : TTTTA-AAATAA--GC-AAGACA-TAT-ACTCA-----GAT-A-----CAAA-C-TGGC------TAAACATGTGACAGATA--TTAAGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGAACTTTCCCA
gi|145186 : TTTTA-AAA--AT-GT-AAGACG-AAT-TTTCG-----AAT-A-----TATA-C-TGGC------TAAACACGTGGCGAATA--TTACGGACAGCATATAATTGTTGC--C---------------------AT-----------------C---TCCTTCCCATCAGATACTATCCC
gi|145187 : tTTTTA-AAA--AAAGC-AAGACG-AATATTTTATATACGAT-A-----TATA-C-TGGC------TAAACACGTGATGAATA--TTACGGACAG----------------CATAATATATATCATTGCTGTCAT-----------------C---TCCTTCCCATCAGGTGCTAGCCCA
gi|145188 : TTTTA-AAAA-A--GC-AAGATG-AAT-ATTCA-----GAT-A-----TATA-C-TGGC------TAAACATATGACAAATA--TTATGGACAGCTTATAATTGTTGT--C---------------------AT-----------------C---TCCTTCCCATTTGGTACCATCCCA
gi|145189 : tTTTTA-AAAAAA--GC-AAGACA-AAT-TTGCG-----TAT-A-----TAAA-C-TGGC------TAAACACATGAGGTATA--
gi|145190 : TTTTAGAAA--A--GC-AA-------T-TTTTG-----AAT-A-----TAAAAC-TGGC------TAAACATGTGACGAATA--TTACGGACAGCATATATTGTTGTCATC---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCACA
gi|145191 : tA-AAA--A--GC-AAGACA-AAT-TTTCA-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTAC
gi|145192 : tttaaaTTTTA-AAA--AA-GA-GAGACG-AAA-TTTCG-----AAT-A-----TATA-C-TGGC------TAAACACGTGACGGATA--TTATGGGCAG----------------C---------------------ATATAATTGTTGA------CATATCCTTCCCATCGATCACTAGTCCA
gi|145193 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTTTG-----GAT-A-----TAAA-C-TGGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCGTTCCCGTCAGGTACTAT
gi|145194 : TTTTA-AAA--A--GC-ATGACA-AAT-TTTTG-----GAT-A-----TAAA-C-CCGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTCTCCCA
gi|145195 : TTTTA-AAA--A--ATTAAGACG-AAT-TTTCA-----GAT-A-----TAAA-C-TGGA------TAAACACGTGATGG
gi|145196 : tTTTTA-AAA--AA-GC-CAGACACAAT-TTTTT-----AAT-A-----TAAA-C-CGGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCCATTCCATCAGGTACTATCC
gi|145197 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTGCG-----TAT-A-----TAAA-C-TGGC------TAAACACATGA--GGTA--CTA
gi|145198 : TTTCA-AAA--A-----AAG-CA-AAT-TTTAG-----GGG-A-----AAAA-AATAGC------TTAACATGTGATGGATA--ATA----------------------------------------------T-----------------C---TTGTTTCCATCAGGTACTATCCCA
gi|145199 : TTTTA-AAA--G--TC-AAGACG-AAT-TTTTG-----GAT-AGGCTTTAAA-C-CGGC------T---------ACGGACA--GTA-GGCC------------------T---------------------AC-----------------C---TCCTTCCCATCAGGTATT
gi|145200 : TTTTA-AAAA-A--GC-AAGACA-AAT-TTTCG-----GATAA-----AAAA-C-TGGC------TAAA
gi|145201 : tTTTTA-AAA--A--A--AAGACA-AAT-TTCCG-----GAT-AAAAA-TAAAAC-AAGC------TAAACATGTGATGCATA--TTA
gi|145202 : A-AAA--A--GC-AAGACG-AAT-TTTCC-----GAT-T-----TAAA-C-TGGC------TAAACATGTGACGAATATTTTACGGACAG----------------C---------------------AT-----------------C---TCCATCCCATCAGCAACTTTCCCA
gi|145203 : ttaaaTA-AAA--A--GC-AAGACA-AAT-TTTTG-----GAT-------TAAA-C-TGAC------TAAACACGTGACGAATA--TTACAGACAA----------------C---------------------AT-----------------C---TCCTTCCTATCAGGTACTATCCCA
gi|145204 : ta-AAAAAG-AAT-TTTAG-----AAG-A-----TATA-C-TGGC------TAAACATGTGATGAATA--TTACAGACAGCATATAATTGTTGT--C---------------------AT-----------------T---TCCTTCCCATCAGTTACTATCCCA
gi|145205 : taacaAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TAACGGACAT----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145206 : aac-AAGATG-AAT-TTTCA-----GAT-A-----TGAA-C-TGGC------TAATTATGTGACGAATA--TTACAGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145207 : aaaaaattacgaTTG-----GAT-A-----TAG--C-TGGC------TAAAAACGTGACGAGTA--TTACGGACAGCATATAATTGTTGT--C---------------------AT-----------------C---TCCTTCCCATCAGGTACTGTCCCA
gi|145208 : aaactaacaaaaata-A-----TAAA-T-TAGCATAAATTAAACATGTGACGAATA--TTACGGACAGA---------------C---------------------AT-----------------C---TCATTCCCATCAGGTACTATCCCA
gi|145209 : ------TAAACATGAGACAGTTA--TTACAGACAG----------------C---------------------ATATAATTGTTGTCATCATC---TCCTTCCCGTCAGGTACTATCCCA
gi|145210 : AAGCACGCGACGAATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCTATCAGGTACTATCCCA
blockSeqs : G TA AA T C A TATAC A GGCTT A A ATAAAT A TT CATAATATATATCATTGCTGTCAT ATA
blockSeqs : . AA T . . . . . AAAA A . . A . CATATAATTGTTGTCATCAT .
blockSeqs : . TA A . . . . . . . . . G . CATATATTGTTGTCATCAT .
blockSeqs : . AA A . . . . . . . . . G . CATATAATTGTTGCCAT .
blockSeqs : . A . . . . . . . . . . A . CTTATAATTGTTGTCAT .
blockSeqs : . A . . . . . . . . . . A . CATATAATTGTTGTCAT .
blockSeqs : . . . . . . . . . . . . A . CATATAATTGTTGTCAT .
blockSeqs : . . . . . . . . . . . . T . CATATAATTGTTGA .
blockSeqs : . . . . . . . . . . . . A . ACAT .
blockSeqs : . . . . . . . . . . . . G . CAT .
blockSeqs : . . . . . . . . . . . . G . TAT .
blockSeqs : . . . . . . . . . . . . G . CAT .
blockSeqs : . . . . . . . . . . . . G . CAT .
blockSeqs : . . . . . . . . . . . . G . CAT .
blockSeqs : . . . . . . . . . . . . G . CAT .
blockSeqs : . . . . . . . . . . . . C . CAT .
blockSeqs : . . . . . . . . . . . . A . TAC .
blockSeqs : . . . . . . . . . . . . A . CAT .
blockSeqs : . . . . . . . . . . . . A . CAT .
blockSeqs : . . . . . . . . . . . . G . CAT .
blockSeqs : . . . . . . . . . . . . A . CAT .
blockSeqs : . . . . . . . . . . . . A . CAT .
blockSeqs : . . . . . . . . . . . A . T .
blockSeqs : . . . . . . . . . G .
blockSeqs : . . . . . . . . . A .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
finalCons : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
Alignments
lowQualScore : 11 666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 22 77 1 1 1 33333 1 66666 2 1 444444 0 1 22 111111111111111111111111111111111111111111111111111111111 222
lowQualScore : . .. .. . . . ..... . ..... . . ...... . . .. ......................................................... ...
lowQualScore : 7 55 33 5 5 5 77777 4 66666 9 4 000000 4 5 00 666666666666666666666666666666666666666666666666666666666 999
consensus : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
Reference ( family-649 ) : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145181 : TTTTA-AAA--A--GC-AAGATG-AAT-TTTCA-----GAT-A-----TAAA-C-TGGC------TAAACATGTGACGGATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGATACTATCCCA
gi|145182 : TCTTA-AAATAA--GC-AAGACA-AAT-TTTTG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGAATA--TTACGGACAG----------------C---------------------AT-----------------T---GCCAACTCATCAGGTACTATCCCA
gi|145183 : TTTTA-AAAAAA--GC-AAGACG-AAT-TTTCA-----GAT-A-----TAAA-T-TGGC------TAAACACGTGATGAATA--TTACGGCCAG----------------T---------------------AT-----------------C---TCATTCCTATCAGTTACTATCC
gi|145184 : TTTTA-AAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAAC-----ACGGATA--TTACGGACTG----------------C---------------------AT-----------------C---TCCTGTCCATCAGGTACTATCCCA
gi|145185 : TTTTA-AAATAA--GC-AAGACA-TAT-ACTCA-----GAT-A-----CAAA-C-TGGC------TAAACATGTGACAGATA--TTAAGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGAACTTTCCCA
gi|145186 : TTTTA-AAA--AT-GT-AAGACG-AAT-TTTCG-----AAT-A-----TATA-C-TGGC------TAAACACGTGGCGAATA--TTACGGACAGCATATAATTGTTGC--C---------------------AT-----------------C---TCCTTCCCATCAGATACTATCCC
gi|145187 : tTTTTA-AAA--AAAGC-AAGACG-AATATTTTATATACGAT-A-----TATA-C-TGGC------TAAACACGTGATGAATA--TTACGGACAG----------------CATAATATATATCATTGCTGTCAT-----------------C---TCCTTCCCATCAGGTGCTAGCCCA
gi|145188 : TTTTA-AAAA-A--GC-AAGATG-AAT-ATTCA-----GAT-A-----TATA-C-TGGC------TAAACATATGACAAATA--TTATGGACAGCTTATAATTGTTGT--C---------------------AT-----------------C---TCCTTCCCATTTGGTACCATCCCA
gi|145189 : tTTTTA-AAAAAA--GC-AAGACA-AAT-TTGCG-----TAT-A-----TAAA-C-TGGC------TAAACACATGAGGTATA--
gi|145190 : TTTTAGAAA--A--GC-AA-------T-TTTTG-----AAT-A-----TAAAAC-TGGC------TAAACATGTGACGAATA--TTACGGACAGCATATATTGTTGTCATC---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCACA
gi|145191 : tA-AAA--A--GC-AAGACA-AAT-TTTCA-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TTAC
gi|145192 : tttaaaTTTTA-AAA--AA-GA-GAGACG-AAA-TTTCG-----AAT-A-----TATA-C-TGGC------TAAACACGTGACGGATA--TTATGGGCAG----------------C---------------------ATATAATTGTTGA------CATATCCTTCCCATCGATCACTAGTCCA
gi|145193 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTTTG-----GAT-A-----TAAA-C-TGGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCGTTCCCGTCAGGTACTAT
gi|145194 : TTTTA-AAA--A--GC-ATGACA-AAT-TTTTG-----GAT-A-----TAAA-C-CCGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTCTCCCA
gi|145195 : TTTTA-AAA--A--ATTAAGACG-AAT-TTTCA-----GAT-A-----TAAA-C-TGGA------TAAACACGTGATGG
gi|145196 : tTTTTA-AAA--AA-GC-CAGACACAAT-TTTTT-----AAT-A-----TAAA-C-CGGC------TA--------------------CGGACAG----------------C---------------------AT-----------------C---TCCATTCCATCAGGTACTATCC
gi|145197 : tTTTTA-AAA--A--GC-AAGACA-AAT-TTGCG-----TAT-A-----TAAA-C-TGGC------TAAACACATGA--GGTA--CTA
gi|145198 : TTTCA-AAA--A-----AAG-CA-AAT-TTTAG-----GGG-A-----AAAA-AATAGC------TTAACATGTGATGGATA--ATA----------------------------------------------T-----------------C---TTGTTTCCATCAGGTACTATCCCA
gi|145199 : TTTTA-AAA--G--TC-AAGACG-AAT-TTTTG-----GAT-AGGCTTTAAA-C-CGGC------T---------ACGGACA--GTA-GGCC------------------T---------------------AC-----------------C---TCCTTCCCATCAGGTATT
gi|145200 : TTTTA-AAAA-A--GC-AAGACA-AAT-TTTCG-----GATAA-----AAAA-C-TGGC------TAAA
gi|145201 : tTTTTA-AAA--A--A--AAGACA-AAT-TTCCG-----GAT-AAAAA-TAAAAC-AAGC------TAAACATGTGATGCATA--TTA
gi|145202 : A-AAA--A--GC-AAGACG-AAT-TTTCC-----GAT-T-----TAAA-C-TGGC------TAAACATGTGACGAATATTTTACGGACAG----------------C---------------------AT-----------------C---TCCATCCCATCAGCAACTTTCCCA
gi|145203 : ttaaaTA-AAA--A--GC-AAGACA-AAT-TTTTG-----GAT-------TAAA-C-TGAC------TAAACACGTGACGAATA--TTACAGACAA----------------C---------------------AT-----------------C---TCCTTCCTATCAGGTACTATCCCA
gi|145204 : ta-AAAAAG-AAT-TTTAG-----AAG-A-----TATA-C-TGGC------TAAACATGTGATGAATA--TTACAGACAGCATATAATTGTTGT--C---------------------AT-----------------T---TCCTTCCCATCAGTTACTATCCCA
gi|145205 : taacaAA--A--GC-AAGACG-AAT-TTTCG-----GAT-A-----TAAA-C-TGGC------TAAACACGTGACGGATA--TAACGGACAT----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145206 : aac-AAGATG-AAT-TTTCA-----GAT-A-----TGAA-C-TGGC------TAATTATGTGACGAATA--TTACAGACAG----------------C---------------------AT-----------------C---TCCTTCCCATCAGGTACTATCCCA
gi|145207 : aaaaaattacgaTTG-----GAT-A-----TAG--C-TGGC------TAAAAACGTGACGAGTA--TTACGGACAGCATATAATTGTTGT--C---------------------AT-----------------C---TCCTTCCCATCAGGTACTGTCCCA
gi|145208 : aaactaacaaaaata-A-----TAAA-T-TAGCATAAATTAAACATGTGACGAATA--TTACGGACAGA---------------C---------------------AT-----------------C---TCATTCCCATCAGGTACTATCCCA
gi|145209 : ------TAAACATGAGACAGTTA--TTACAGACAG----------------C---------------------ATATAATTGTTGTCATCATC---TCCTTCCCGTCAGGTACTATCCCA
gi|145210 : AAGCACGCGACGAATA--TTACGGACAG----------------C---------------------AT-----------------C---TCCTTCCTATCAGGTACTATCCCA