lowQualScore                  :                                                                    1111                      11                                            
lowQualScore                  :       1   3 6 1 1 1        1                                777    1111  333     4      7    11   2        2     2  0 0     6              
lowQualScore                  :       .   . . . . .        .                                ...    ....  ...     .      .    ..   .        .     .  . .     .              
lowQualScore                  :       7   3 7 6 5 5        5                                888    7777  777     4      2    00   7        5     7  7 4     0              
consensus                     :  AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
Reference ( gi|25657 )        :  AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTCTGTTTGTTT-TGTTACGGAGTAAA-TGGATTCCTGATTGCCAGCTCCGTG
gi|25636                      :  AAACT-CAA-C-G-G-A-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAGTGAACGCTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCTGTG
gi|25637                      : cAAACC-CCA-C-G-G-A-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAATTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTTCCAGTCCTGTG
gi|25638                      : cAAACT-CCA-C-G-G-A-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAGTGAACACTC---CTGC----AT---TTGACTACCATTTTATTCATTT---TTCCGAAGTGAA-TGGAGTCCTGGTTGCCAGCTCTGTG
gi|25639                      : cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATT---TTT-TTT-TGTTACGGAGTAAA-TGGATTCCTGGCTG
gi|25641                      : cAAACT-CCA-C-A-A-A-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAGTGAACATTC---TTGT----AT---TTGACTACCATTCTGTTTATTT-TGTTACATTATAAA-TATATTCTTGGTTACCAACTCCGTG
gi|25642                      : cAAACT-CAA-C-G-G-A-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATATGAACACTC---CTGC----AT---TTGACAACTATTTTGTT------------GG----AA-TG-----CTGGTTTCCAGTTCCGT
gi|25643                      : cAAACT-TCA-C-G-G-GGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAGTGAGCACTC---CTGC----AT---TTGAC-ATCATTTCGTT------------GGAATA----------TTGGTTTCCAGCTCCGT
gi|25644                      : cAAACT-CCA-T-G-G-T-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAGTGACCATTC---CAGC----AT---TTGACAAACATTTTGTT
gi|25645                      : cAAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGA
gi|25647                      : cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAGT-CACAGTCAAGGTGCA---AT---CTGATCACC
gi|25640                      : cAAACT-CCA-G-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25649                      : cAAACT-TCA-C-G-G-A-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAGTGA
gi|25648                      : cAAACT-CCA-CTG-G-A-CTGGTTCA-CTCGTCGTCTGAT--------AGTGAACACTT---CTG---------------------TC--TTTATTT-TGTTACGGAGTCAA-TGGA
gi|25650                      : cAAACT-TCA-C-G-G-A-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAGTGA
gi|25651                      : cAAACT-TCA-C-A-G-A-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAGTGA
gi|25652                      : cAAACT-CAA-T-G-GGA-ATGGTTCA-CTCTTTTTCTGGTTCAGGGAAAGTGAACCCTT---GTTC----GT---TT
gi|25653                      : cAAACT-CCA-CTG-A-A-CTGGTTCA-CTCTGCTTCTAGTTCAGAAA
gi|25654                      : cAAACTTCCA-C-AAG-A-CCAATTCA-CTC------CGGTTCGGAGAAAGTGAACAC
gi|25656                      : cAAACT-CCAGT-A-T-A-CTGGTTTG-TTCTACTTCCTGTTT-GAGAAA---AATATTC---TTGCAAAAAT---TT-----CCATT-TGTTTTTTTCTGATCTGCATTAAA-TG
gi|25655                      : cAAACT-TCA-CTG-G-A-CTGGTTCA-CTCTACTTCCTATTGGG
gi|25658                      :  cAACT-TCA-C-G-G-A-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAGTTAAAACTC---CTGC----AT---TTGTCTTCCATTTTGTTTATTG-TTTTACGGAGTAAA-TGGATTCCTTGTTGCCAGCTCCGTGtcacagtcaaaatacatagactggctactgttt
gi|25659                      :   AACT-CTA-CTG-G-A-TTGGTTTA-TTCAATTTCGTATTCGGAAAAAAATAACACTC---CTGC----AA---TTGACAGTCATTCTGAACCTTT-TGTTATGG-GTTAA-TGGAATGCTGGTTGCAAGTTCC
gi|25646                      :   AACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAATGA
gi|25660                      : cgAACT-CAAAT-A-G-A-CCGATTCA-CTCTATTTCCTGTTCAGA-AAAATACGTATTC---CTGCTAGTAT---GCGGCAGCCATTTTGTTT
gi|25661                      :               -G-A-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAGTG-ACAGTCAAATTGC----ATAGACTGGCTAC
gi|25662                      :                 -A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAACACTC---CTGC----AT---TTTATAACAATTTTAATTGTT--------GG----AA-TG-----CTGGTTTCTAACTCCGTG
gi|25663                      :                                                          CTC---CTGT----AT---TTAACTATCATTTTGTTGATTT-TGTTACGGAGTAAA-TGGATTCATAGTTGCCAGCTCCGTG
gi|25664                      :                                                                          ---TTGGCTACCATTTTGTTTATTT-TGCTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCTTG
gi|25665                      :                                                                                          TGTTCATTT-TGTTACAGAGTAAAATGGATTTCTGGTTGCCAGCTCCGTG





Alignments
lowQualScore                  :                                                                     1111                                                                    
lowQualScore                  :        1   3 6 1 1 1        1                                777    0000  666     3           0    2    1   1     2                         
lowQualScore                  :        .   . . . . .        .                                ...    ....  ...     .           .    .    .   .     .                         
lowQualScore                  :        6   2 4 5 5 5        5                                000    5555  777     1           8    5    6   8     5                         
consensus                     :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
Reference ( family-643 )      :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
gi|25636                      :   AAACT-CAA-C-G-G-A-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAGTGAACGCTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCTGTG
gi|25637                      :  cAAACC-CCA-C-G-G-A-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAATTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTTCCAGTCCTGTG
gi|25638                      :  cAAACT-CCA-C-G-G-A-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAGTGAACACTC---CTGC----AT---TTGACTACCATTTTATTCATTT---TTCCGAAGTGAA-TGGAGTCCTGGTTGCCAGCTCTGTG
gi|25639                      :  cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTT-T---TTT-TGTTACGGAGTAAA-TGGATTCCTGGCTG
gi|25640                      :  cAAACT-CCA-G-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25641                      :  cAAACT-CCA-C-A-A-A-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAGTGAACATTC---TTGT----AT---TTGACTACCATTCTGTTTATTT-TGTTACATTATAAA-TATATTCTTGGTTACCAACTCCGTG
gi|25642                      :  cAAACT-CAA-C-G-G-A-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATATGAACACTC---CTGC----AT---TTGACAAC---------TATTT-TGTT--GG----AA-TG-----CTGGTTTCCAGTTCCGT
gi|25643                      :  cAAACT-TCA-C-G-G-GGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAGTGAGCACTC---CTGC----AT---TTGAC-ATCATTTCGTT------------GGAATA----------TTGGTTTCCAGCTCCGT
gi|25644                      :  cAAACT-CCA-T-G-G-T-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAGTGACCATTC---CAGC----AT---TTGACAAACATTTTGTT
gi|25645                      :  cAAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGA
gi|25646                      :   cAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAATGA
gi|25647                      : cgAAACT-CCA-C-G-G-A-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAGT-CACAGTCAAGGTGCA---AT---CTGATCACC
gi|25648                      :  cAAACT-CCA-CTG-G-A-CTGGTTCA-CTCGTCGTCTGAT--------AGTGAACACTT---CTG-----------------------TCTTTATTT-TGTTACGGAGTCAA-TGGA
gi|25649                      :  cAAACT-TCA-C-G-G-A-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAGTGA
gi|25650                      :  cAAACT-TCA-C-G-G-A-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAGTGA
gi|25651                      :  cAAACT-TCA-C-A-G-A-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAGTGA
gi|25652                      :  cAAACT-CAA-T-G-GGA-ATGGTTCA-CTCTTTTTCTGGTTCAGGGAAAGTGAACCCTT---GTTC----GT---TT
gi|25653                      :  cAAACT-CCA-CTG-A-A-CTGGTTCA-CTCTGCTTCTAGTTCAGAAA
gi|25654                      :  cAAACTTCCA-C-AAG-A-CCAATTCA-CTC------CGGTTCGGAGAAAGTGAACAC
gi|25655                      :  cAAACT-TCA-CTG-G-A-CTGGTTCA-CTCTACTTCCTATTGGGTCACAGTCAAAA-------TAC----ATAGACTGGCTACTGTTT
gi|25656                      :  cAAACT-CCAGT-A-T-A-CTGGTTTG-TTCTACTTCCTGTTT-GAGAAA---AATATTC---TTGCAAAAAT---TT-----CCA-TTTGTTTTTTTCTGATCTGCATTAAA-TG
gi|25657                      :  cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTCTGTTTGTTT-TGTTACGGAGTAAA-TGGATTCCTGATTGCCAGCTCCGTG
gi|25658                      :    AACT-TCA-C-G-G-A-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAGTTAAAACTC---CTGC----AT---TTGTCTTCCATTTTGTTTATTG-TTTTACGGAGTAAA-TGGATTCCTTGTTGCCAGCTCCGTG
gi|25659                      :    AACT-CTA-CTG-G-A-TTGGTTTA-TTCAATTTCGTATTCGGAAAAAAATAACACTC---CTGC----AA---TTGACAGTCATTCTGAACCTTT-TGTTATGG-GTTAA-TGGAATGCTGGTTGCAAGTTCC
gi|25660                      :    AACT-CAAAT-A-G-A-CCGATTCA-CTCTATTTCCTGTTCAGA-AAAATACGTATTC---CTGCTAGTAT---GCGGCAGCCATTTTGTTT
gi|25661                      :                -G-A-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAGTG-ACAGTCAAATTGC----ATAGACTGGCTAC
gi|25662                      :                  -A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAACACTC---CTGC----AT---TTTATAACAATTTTA---A--T-TGTT--GG----AA-TG-----CTGGTTTCTAACTCCGTG
gi|25663                      :                                                           CTC---CTGT----AT---TTAACTATCATTTTGTTGATTT-TGTTACGGAGTAAA-TGGATTCATAGTTGCCAGCTCCGTG
gi|25664                      :                                                                           ---TTGGCTACCATTTTGTTTATTT-TGCTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCTTG
gi|25665                      :                                                                                          TTGTTCATTT-TGTTACAGAGTAAAATGGATTTCTGGTTGCCAGCTCCGTG





Alignments
lowQualScore                  :                                                                     1111                                                                    
lowQualScore                  :        1   3 6 1 1 1        1                                777    0000  666     3           0    2    1   1     2                         
lowQualScore                  :        .   . . . . .        .                                ...    ....  ...     .           .    .    .   .     .                         
lowQualScore                  :        6   2 4 5 5 5        5                                000    5555  777     1           8    5    6   8     5                         
consensus                     :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
Reference ( family-643 )      :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
gi|25636                      :   AAACT-CAA-C-G-G-A-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAGTGAACGCTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCTGTG
gi|25637                      :  cAAACC-CCA-C-G-G-A-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAATTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTTCCAGTCCTGTG
gi|25638                      :  cAAACT-CCA-C-G-G-A-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAGTGAACACTC---CTGC----AT---TTGACTACCATTTTATTCATTT---TTCCGAAGTGAA-TGGAGTCCTGGTTGCCAGCTCTGTG
gi|25639                      :  cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTT-T---TTT-TGTTACGGAGTAAA-TGGATTCCTGGCTG
gi|25640                      :  cAAACT-CCA-G-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25641                      :  cAAACT-CCA-C-A-A-A-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAGTGAACATTC---TTGT----AT---TTGACTACCATTCTGTTTATTT-TGTTACATTATAAA-TATATTCTTGGTTACCAACTCCGTG
gi|25642                      :  cAAACT-CAA-C-G-G-A-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATATGAACACTC---CTGC----AT---TTGACAAC---------TATTT-TGTT--GG----AA-TG-----CTGGTTTCCAGTTCCGT
gi|25643                      :  cAAACT-TCA-C-G-G-GGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAGTGAGCACTC---CTGC----AT---TTGAC-ATCATTTCGTT------------GGAATA----------TTGGTTTCCAGCTCCGT
gi|25644                      :  cAAACT-CCA-T-G-G-T-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAGTGACCATTC---CAGC----AT---TTGACAAACATTTTGTT
gi|25645                      :  cAAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGA
gi|25646                      :   cAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAATGA
gi|25647                      : cgAAACT-CCA-C-G-G-A-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAGT-CACAGTCAAGGTGCA---AT---CTGATCACC
gi|25648                      :  cAAACT-CCA-CTG-G-A-CTGGTTCA-CTCGTCGTCTGAT--------AGTGAACACTT---CTG-----------------------TCTTTATTT-TGTTACGGAGTCAA-TGGA
gi|25649                      :  cAAACT-TCA-C-G-G-A-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAGTGA
gi|25650                      :  cAAACT-TCA-C-G-G-A-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAGTGA
gi|25651                      :  cAAACT-TCA-C-A-G-A-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAGTGA
gi|25652                      :  cAAACT-CAA-T-G-GGA-ATGGTTCA-CTCTTTTTCTGGTTCAGGGAAAGTGAACCCTT---GTTC----GT---TT
gi|25653                      :  cAAACT-CCA-CTG-A-A-CTGGTTCA-CTCTGCTTCTAGTTCAGAAA
gi|25654                      :  cAAACTTCCA-C-AAG-A-CCAATTCA-CTC------CGGTTCGGAGAAAGTGAACAC
gi|25655                      :  cAAACT-TCA-CTG-G-A-CTGGTTCA-CTCTACTTCCTATTGGGTCACAGTCAAAA-------TAC----ATAGACTGGCTACTGTTT
gi|25656                      :  cAAACT-CCAGT-A-T-A-CTGGTTTG-TTCTACTTCCTGTTT-GAGAAA---AATATTC---TTGCAAAAAT---TT-----CCA-TTTGTTTTTTTCTGATCTGCATTAAA-TG
gi|25657                      :  cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTCTGTTTGTTT-TGTTACGGAGTAAA-TGGATTCCTGATTGCCAGCTCCGTG
gi|25658                      :    AACT-TCA-C-G-G-A-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAGTTAAAACTC---CTGC----AT---TTGTCTTCCATTTTGTTTATTG-TTTTACGGAGTAAA-TGGATTCCTTGTTGCCAGCTCCGTG
gi|25659                      :    AACT-CTA-CTG-G-A-TTGGTTTA-TTCAATTTCGTATTCGGAAAAAAATAACACTC---CTGC----AA---TTGACAGTCATTCTGAACCTTT-TGTTATGG-GTTAA-TGGAATGCTGGTTGCAAGTTCC
gi|25660                      :    AACT-CAAAT-A-G-A-CCGATTCA-CTCTATTTCCTGTTCAGA-AAAATACGTATTC---CTGCTAGTAT---GCGGCAGCCATTTTGTTT
gi|25661                      :                -G-A-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAGTG-ACAGTCAAATTGC----ATAGACTGGCTAC
gi|25662                      :                  -A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAACACTC---CTGC----AT---TTTATAACAATTTTA---A--T-TGTT--GG----AA-TG-----CTGGTTTCTAACTCCGTG
gi|25663                      :                                                           CTC---CTGT----AT---TTAACTATCATTTTGTTGATTT-TGTTACGGAGTAAA-TGGATTCATAGTTGCCAGCTCCGTG
gi|25664                      :                                                                           ---TTGGCTACCATTTTGTTTATTT-TGCTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCTTG
gi|25665                      :                                                                                          TTGTTCATTT-TGTTACAGAGTAAAATGGATTTCTGGTTGCCAGCTCCGTG


blockSeqs                     :        T   G T A G G        A                                AAG    AAAA  AGA     T                C    A   A     A
blockSeqs                     :        .   A T . . .        .                                AAA    TAGT  AGA     T                .    C   A     .
blockSeqs                     :        .   . T . . .        .                                .      A     .       T                .    A   A     .
blockSeqs                     :        .   . T . . .        .                                .      .     .       T                .    A   T     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       A                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       A                .    C   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       C                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       T                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       T                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       T                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       A                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       A                .    A   A     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       T                .    .   .     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       A                .    .   .     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       T                .    .   .     .
blockSeqs                     :        .   . . . . .        .                                .      .     .       T                                
blockSeqs                     :        .   . . . . .        .                                .      .     .       .                                
blockSeqs                     :        .   . . . . .        .                                .      .     .       .                                
blockSeqs                     :        .   . . . . .        .                                .      .     .       .                                
blockSeqs                     :        .   . . . . .        .                                             .                                        
blockSeqs                     :        .   . . . . .        .                                                                                      
blockSeqs                     :        .   . . . . .        .                                                                                      
blockSeqs                     :        .   . . . . .        .                                                                                      
blockSeqs                     :        .   . . . . .        .                                                                                      
blockSeqs                     :                . . .        .                                                                                      
blockSeqs                     :                  . .        .                                                                                      


blockSeqCons                  :   
originalCons                  :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
finalCons                     :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG





Alignments
lowQualScore                  :                                                                     1111                                                                    
lowQualScore                  :        1   3 6 1 1 1        1                                777    0000  666     3           0    2    1   1     2                         
lowQualScore                  :        .   . . . . .        .                                ...    ....  ...     .           .    .    .   .     .                         
lowQualScore                  :        6   2 4 5 5 5        5                                000    5555  777     1           8    5    6   8     5                         
consensus                     :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
Reference ( family-643 )      :   AAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCGTG
gi|25636                      :   AAACT-CAA-C-G-G-A-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAGTGAACGCTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCTGTG
gi|25637                      :  cAAACC-CCA-C-G-G-A-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAATTGAACACTC---CTGC----AT---TTGACTACCATTTTGTTTATTT-TGTTACGGAGTAAA-TGGATTCCTGGTTTCCAGTCCTGTG
gi|25638                      :  cAAACT-CCA-C-G-G-A-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAGTGAACACTC---CTGC----AT---TTGACTACCATTTTATTCATTT---TTCCGAAGTGAA-TGGAGTCCTGGTTGCCAGCTCTGTG
gi|25639                      :  cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTTT-T---TTT-TGTTACGGAGTAAA-TGGATTCCTGGCTG
gi|25640                      :  cAAACT-CCA-G-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25641                      :  cAAACT-CCA-C-A-A-A-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAGTGAACATTC---TTGT----AT---TTGACTACCATTCTGTTTATTT-TGTTACATTATAAA-TATATTCTTGGTTACCAACTCCGTG
gi|25642                      :  cAAACT-CAA-C-G-G-A-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATATGAACACTC---CTGC----AT---TTGACAAC---------TATTT-TGTT--GG----AA-TG-----CTGGTTTCCAGTTCCGT
gi|25643                      :  cAAACT-TCA-C-G-G-GGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAGTGAGCACTC---CTGC----AT---TTGAC-ATCATTTCGTT------------GGAATA----------TTGGTTTCCAGCTCCGT
gi|25644                      :  cAAACT-CCA-T-G-G-T-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAGTGACCATTC---CAGC----AT---TTGACAAACATTTTGTT
gi|25645                      :  cAAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGA
gi|25646                      :   cAACT-CCA-C-G-G-A-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAATGA
gi|25647                      : cgAAACT-CCA-C-G-G-A-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAGT-CACAGTCAAGGTGCA---AT---CTGATCACC
gi|25648                      :  cAAACT-CCA-CTG-G-A-CTGGTTCA-CTCGTCGTCTGAT--------AGTGAACACTT---CTG-----------------------TCTTTATTT-TGTTACGGAGTCAA-TGGA
gi|25649                      :  cAAACT-TCA-C-G-G-A-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAGTGA
gi|25650                      :  cAAACT-TCA-C-G-G-A-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAGTGA
gi|25651                      :  cAAACT-TCA-C-A-G-A-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAGTGA
gi|25652                      :  cAAACT-CAA-T-G-GGA-ATGGTTCA-CTCTTTTTCTGGTTCAGGGAAAGTGAACCCTT---GTTC----GT---TT
gi|25653                      :  cAAACT-CCA-CTG-A-A-CTGGTTCA-CTCTGCTTCTAGTTCAGAAA
gi|25654                      :  cAAACTTCCA-C-AAG-A-CCAATTCA-CTC------CGGTTCGGAGAAAGTGAACAC
gi|25655                      :  cAAACT-TCA-CTG-G-A-CTGGTTCA-CTCTACTTCCTATTGGGTCACAGTCAAAA-------TAC----ATAGACTGGCTACTGTTT
gi|25656                      :  cAAACT-CCAGT-A-T-A-CTGGTTTG-TTCTACTTCCTGTTT-GAGAAA---AATATTC---TTGCAAAAAT---TT-----CCA-TTTGTTTTTTTCTGATCTGCATTAAA-TG
gi|25657                      :  cAAACT-CCA-C-G-G-A-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAGTGAACACTC---CTGC----AT---TTGACTACCATTCTGTTTGTTT-TGTTACGGAGTAAA-TGGATTCCTGATTGCCAGCTCCGTG
gi|25658                      :    AACT-TCA-C-G-G-A-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAGTTAAAACTC---CTGC----AT---TTGTCTTCCATTTTGTTTATTG-TTTTACGGAGTAAA-TGGATTCCTTGTTGCCAGCTCCGTG
gi|25659                      :    AACT-CTA-CTG-G-A-TTGGTTTA-TTCAATTTCGTATTCGGAAAAAAATAACACTC---CTGC----AA---TTGACAGTCATTCTGAACCTTT-TGTTATGG-GTTAA-TGGAATGCTGGTTGCAAGTTCC
gi|25660                      :    AACT-CAAAT-A-G-A-CCGATTCA-CTCTATTTCCTGTTCAGA-AAAATACGTATTC---CTGCTAGTAT---GCGGCAGCCATTTTGTTT
gi|25661                      :                -G-A-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAGTG-ACAGTCAAATTGC----ATAGACTGGCTAC
gi|25662                      :                  -A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAACACTC---CTGC----AT---TTTATAACAATTTTA---A--T-TGTT--GG----AA-TG-----CTGGTTTCTAACTCCGTG
gi|25663                      :                                                           CTC---CTGT----AT---TTAACTATCATTTTGTTGATTT-TGTTACGGAGTAAA-TGGATTCATAGTTGCCAGCTCCGTG
gi|25664                      :                                                                           ---TTGGCTACCATTTTGTTTATTT-TGCTACGGAGTAAA-TGGATTCCTGGTTGCCAGCTCCTTG
gi|25665                      :                                                                                          TTGTTCATTT-TGTTACAGAGTAAAATGGATTTCTGGTTGCCAGCTCCGTG