lowQualScore : 1 33 1111 33333333 2222222222222222222222222222222222222222 111
lowQualScore : 9 222 5555555 66666666 222 1 5555 11 444 5 3 1 55 2 5 22 3 1 5 0 2 7777 2 2 11111111 4444 6666666666666666666666666666666666666666 2 555 1
lowQualScore : . ... ....... ........ ... . .... .. ... . . . .. . . .. . . . . . .... . . ........ .... ........................................ . ... .
lowQualScore : 3 999 4444444 00000000 999 5 4444 77 555 5 5 6 55 5 6 88 0 1 5 9 9 6666 9 9 55555555 2222 5555555555555555555555555555555555555555 0 555 7
consensus : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGCG---TTTAGTTTGCGTTT-AAGTTTTGGGTNTTTGCCTC-CAANCTCAAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTT---TT-T-ATGCTTTTG--------AT----AT--------------------------A----C--------TGACCCAG-GTAAGGC-A-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
Reference ( gi|43765 ) : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTG---TTTAGTTTGTGTTT-AAGTTTTGTTTTTTTGCCTC-TAAGTTCAAAACCACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTT---GT-T-ATGCTTTTG--------AT----AT--------------------------A----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43769 : ATATATTGACCCTGGTAAGCCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTATGTG---TTTAGTTTGCGTTT-AAGTTTTGGTTTTTTGCCTCTTAAGTTCAAAACTATCTTTCTGATTCTGTTCACATTTACTTTCCTGTTTCATGACACATTG-CTT---TT-T-ATGCTTTTGATAT----AT----AT--------------------------A----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATGCAAGTAGGTTAAA
gi|43767 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTG---TTTAGTTTGCGTTT-AAGTTTTGGTTTTT-GTCTC-TAAGTTCAAAACTACCTTTCTGATTCTGTTCACATTTGTTTTCGTGCTTCATTACACATTG-CTT---TT-T-GTGCTTTTG--------AT----AT--------------------------ATATCC--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCAAACAAGCAGGTTAAA
gi|43770 : atATATACTGACCCAGGTAAGGCA-TCTACCATTGCACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTG---TTTAGTTTGTGTTT-AAGTTTTGGTTTTT-GCCTT-TAAGTCCCAAACCACCTTTCTGATTCTGTTCATATTTGCTTGCCTGCTTCATTACACATTG-CTT---TT-T-ATGCTTTTGATAT----AT----AT--------------------------A----T--------TGACCCTG-GTAAGCCAA-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43773 : ATATATTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAAATTTTGCG---TTTAGTT-GTGTTT-AAGTTTTGGATTTT-GCCTC-CAAGTCCTAAACTACCTTTCTGATTCTGTTCACATTTACTTTTCTGCTTCATTACACATTG-CTT---TT-T-ATGCTTTTGAAATACATAT----AT--------------------------A----T--------TGACCCAG-GTAAGGC---------ATTGGACTTAGCCATGCAAGCAGGTTAAA
gi|43772 : ATATATTGACCCAGGTAAGGCAATCTGCTATTAGACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGCG---TTTAG-ATGTGTTT-ATGTCTTG-GTTTTTGTCTC-CAGGTACCAAACTACCTTTTTGA--CTGTTTACATTTGCTTTCCTACTTCATTACACATTG-ATT---TT-T-ATGCATTTGATAT----AT----AT--------------------------A----T--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43774 : ACATACTGACCTAAGTAAGGCAATCTACCCTTGTACAT---A-------G--------C-------------AA--------TAAACGTTTGTG---TTTAGTTTGCTTTT-AAGTTTTGGTTTT-TGCCTC-TAAGTTCAAAACTATCTTTTTGATTCTGTTTACATTTGCTTTTCTGCTTTATTACACATTG-TTT----T-T-ATGCATTTGATAT----AT----AT--------------------------A----T--------TGACCCAG-GTAAGGCAA-TCTGCTATTAGACTTGGCCATACAAGCAGGTTAAA
gi|43768 : ATATCCTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AA-A----CAAGC--AGGTTAAACTTATGTG---TTTAGTTTGCATTT-AAGTTTTGGTTTTT-GTCTC-TAAGTCCCAAGCTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CCT---TT-T-GTGCTTTTG--------AT----AT--------------------------A----TATATATATTGA------GTAAAGCTA-TCTGCCATTGGACTTAGCC
gi|43788 : atATATACTGACCCAGGTAAGGCA-TCTACCATTGCACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAA
gi|43787 : caggttaaacttttgcgtttagttgcgtttaagttttggtgtttgcctccaagtccttaactttctttctgattctattcacatttactttcctgcttcattacacattgcttgttatgcttttgATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAA
gi|43794 : caggttaaacttttgtgtttaagttttggtgtttgcctccaagtccttaactttctttctgattctattcacatttactttcctgcttcattacacattgcttgttatgcttttgATATATTGACCCAGGTAAGGCAATTCACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AGGTTAAA
gi|43795 : ttaagttttggttttacctccaattcctaaactatctttctgattctgttcacatttgctttcctgcttcattacacactgtttttttatgcctttgatttatatATATATTGACCGAGGTAAGGCAATTTACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AAGTTAAA
gi|43771 : ttaagttttggttttacctccaattcctaaactatctttctgattctgttcacatttgctttcctgcttcattacacattgtttttttatgcttttgatatatatatatatatatatatatatATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-G----CAAGT--AGGTTAAACTTTTGCG---TTTAG-TTGCGTTT-AAGTTTTG-GTGTTTGCCTC-CAATCTCAA
gi|43792 : ACATACTGACCTAAGTAAGGCAATCTACCCTTGTACAT---A-------G--------CA---AT-A----
gi|43766 : aggttaaacttttgcatttaagtttttggtttttgtctccaagtcttaaactatcttttttattctgttcacattcgctttcacattgctttttatgcttttgatatATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTG------AGTTT
gi|43791 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAA
gi|43776 : aggttaaaattttgcttttagttgcgtttaagttctggttttgcctccaagtcctgattctgttcacatttgcttttctacttcataacacattgcttttaatgcttttgatatatatatatatatatatatatatatatATATATTGACCCAGGTAAGGCAATTCACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTGCGTTTTA
gi|43777 : ATATATTGACCGAGGTAAGGCAATTTACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AAGTTAAACTTTTGTG------AGTTT
gi|43775 : ATATATTGACCCAGGTAAGGCA--------TTGGACTT---A-------G--------CC---AT-G----CAAGC--AGGTTAAACTTTTGTGAA-TTTA
gi|43779 : TGGCACAGGTAGGGCCCTTTA-----AGACTT---A-------ATTTTTCGTCT---GT-A----CACACCAAGGTTAAACTTTTGTG---TTTAG-ATGCGTTT-AAGTTTTG-GTGTTTGCCTC-CAATCTCAA
gi|43780 : atttTGTCCTAGG-AAAGCTAT-TACCAT--GACAT---C-------G--------TC---GTCAGTGTCATCC--AGGTTAAACTTTTGTG---TTAAG-TTGCATTT-AAGTTTTG-GTGTTTGCCTC-CAGCCTCAA
gi|43778 : TTGGACTT---A-------G--------AC---AC------CAAA-----GTTAAACTTTTGTG---TTTAG-TTGCGTTT-AAGTTTTG-GTGTTTGCCTC-CAATCTCA
gi|43782 : attttggcacagttatggccctttTTGGACTTTTCG-------T--------CT---AT-AGA--CACCC--AGGTTAAACTTTTGCG---TTTAG-TTGTGTTT-AAGTTTTG-GTGTTTGCCTC-CAATCTCA
gi|43781 : TTGGACTT---AATTTTTCG--------TCTGTAG-A----CAACC--AAGTTAAACTTTTGCG---TTTAG-TTGCGTTT-AAGGTTTG-GTGTTTGCCTC-TAATCTCAA
gi|43783 : TTGGACTT---A-------G----------------A----CACCC--AGGTTAAACTTTTGTG---TTTAGTT
gi|43785 : -A----CAGCC--AGGTTAAACTTTTGCG---TTTAG-TTGCGTTT-AAGTTTTG-GTGTTTGCCTC-CAATCTCA
gi|43784 : -A----CAACC--AAGTTAAACTTTTGCG---TTTAG-TTGCGTTTAAAGTTTGG--TGTTTGCCTC-CAATCTCAA
gi|43786 : AACC--AGGTTAAACTTTTGCG---TTTAG-TTGTGTTT-AAGTTTTG-GTGTTTGCCTC-CAATCTCAA
gi|43788 : C--AGGTTAAACTTTTGCG---TTTAGTT-GCGTTT-AAGTTTTGGTGTTT-GCCTC-CAAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTT---GT-T-ATGCTTTTG--------AT----AT--------------------------A----C--------TGACCCAG-GTAAGGC-A-TCTACCATTGCACTTGGCCATACAAGCAGGTTAAA
gi|43787 : C--AGGTTAAACTTTTGTG---TT-----------T-AAGTTTTGGTGTTT-GCCTC-CAAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTT---GT-T-ATGCTTTTG--------AT----AT--------------------------A----C--------TGACCCAG-GTAAGGCAA-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43789 : C--AGGTTAAACTTTTGTG---TTTAG-TTGCG-TT-AAGTTTTG-GTGTTTGCCTC-CAATCTCAA
gi|43790 : C--AGATTAAACTTTTGCG---TTTA-TTTGCGTTT-AAGTTTTG-GTGTTTGTCTC-TAATCTCAA
gi|43792 : --AGGTTAAACTTTTGCA---TTTA------------AGTTTTTGGTTTTTGTCTC-CAAGTCTTAAACTATCTTTTTTATTCTGTTCACATTCGCTTT------------CACATTG-CTT---TT-T-ATGCTTTTG--------ATATACAT--------------------------A----C--------TGACCTAA-GTAAGGCAA-TCTACCCTTGTACATAGCAATA
gi|43791 : --AGGTTAAAATTTTGCT---TTTAG-TTGCGTTT-AAGTTCTG--GTTTTGCCTC-CAAG-------------TCCTGATTCTGTTCACATTTGCTTTTCTACTTCATAACACATTG-CTT---TT-A-ATGCTTTTG--------AT----AT--------------------------A----
gi|43793 : TTAAAGTTTTGTG---TTACGTTTGCGTTT-AAGTTTTAA------GCCTC-TGGGTCCAAAACTTTATTTCTGATTATGTTCTTGTTTGGTTTACTGCTTCATTTTGCATTG-CCTTCAATAT-ATATGGATG--------AT----GT-------------------------------T--------TGCCTCAGTACAGGGCAA-TCTACCATCCAATCTAGCtatatatatatatatatatatatatatatacaccaaggtaatgcaatctaccattggacttagccatacaagcaggttaaa
gi|43794 : TT-AAGTTTTGGTTTT--ACCTC-CAATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACACTGTTTT---TT-T-ATGCCTTTGATTTATATAT----AT--------------------------A----T--------TGACCCAG-GTAAGGCAA-TTCACCATTGAACATGGCCATACAAGCAGGTTAAA
gi|43795 : TT-AAGTTTTGGTTTT--ACCTC-CAATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-TTT---TT-TTATGCTTTTG--------AT----ATATATATATATATATATATATATATATA----T--------TGACCGAG-GTAAGGC-AATTTACCATTGAACATGGCCATACAAGCAAGTTAAA
gi|43768 : --------AT----AT--------------------------C----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCAAACAAGCAGGTTAAA
gi|43771 : at--------AT----AT--------------------------A----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATGCAAGTAGGTTAAActtatgtgtttagtttgcatttaagttttggtttttgtctctaagtcccaagctacctttctgattctgttcacatttgctttcctgcttcattacacattgccttttgtgcttttgatatatatatatattgagtaaagctatctgccattggacttagcc
gi|43766 : --------AT----AT--------------------------A----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATACAAGCAGGTTAAActtttgcgtttagttgcgtttaagttttggtgtttgcctccaatctcaa
gi|43776 : --------AT----AT--------------------------A----T--------TGACCCAG-GTAAGGC-AATTCACCATTGAACATGGCCATACAAGCAGGTTAAActtttgtgagttt
gi|43777 : --------AT----AT--------------------------A----T--------TGACCGAG-GTAAGGC-AATTTACCATTGAACATGGCCATACAAGCAAGTTAAActtttgtgcgtttta
gi|43775 : --------AT----AT--------------------------A----T--------TGACCCAG-GTAAGGC-A-T-------TGGACTTAGCCATGCAAGCAGGTTAAActtttgtgagttt
gi|43791 : ACCAAG-GTAATGC-AATCTACCATTGGACTTAGCCATACAAGCAGGTTAAActtttgtgaattta
Alignments
lowQualScore : 1 1 1 66666666666666666666666666 1111111111111 2
lowQualScore : 0 333 6666666 77777777 333 1 6666 1 11 11 11 0 2 1 7 5 3 1 11 0 2 33 2 444 99999999999999999999999999 5555 5555555555555 2 0 2
lowQualScore : . ... ....... ........ ... . .... . .. .. .. . . . . . . . .. . . .. . ... .......................... .... ............. . . .
lowQualScore : 9 555 5555555 22222222 555 8 4444 2 99 99 99 1 3 5 9 6 0 5 55 7 7 77 7 777 77777777777777777777777777 7777 2222222222222 9 0 9
consensus : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTGTTTGCCTC-CAANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTT--T-ATGCTTT---TGATAT----------------------AT----ATA----C--------TGACCCAG-GTAAGGCAA-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
Reference ( family-639 ) : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTNTTTGCCTC-CAANCTCAAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTT--T-ATGCTTT---TG--------------------------AT----ATA----C--------TGACCCAG-GTAAGGC-A-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43765 : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTT-AAGTTTTGTTTTTTTGCCTC-TAAGTTCAAAACCACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTGT--T-ATGCTTT---TG--------------------------AT----ATA----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43766 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG-----AGTTT
gi|43767 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGCGTTT-AAGTTTTGG-TTTTTGTCTC-TAAGTTCAAAACTACCTTTCTGATTCTGTTCACATTTGTTTTCGTGCTTCATTACACATTG-CTTTT--T-GTGCTTT---TG--------------------------AT----ATATATCC--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCAAACAAGCAGGTTAAA
gi|43768 : atATATCCTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AA-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCATTT-AAGTTTTGG-TTTTTGTCTC-TAAGTCCCAAGCTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CCTTT--T-GTGCTTT---TG--------------------------AT----ATA----TATATATATTGA------GTAAAGCTA-TCTGCCATTGGACTTAGCC
gi|43769 : atATATATTGACCCTGGTAAGCCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCGTTT-AAGTTTTGGTTTTTTGCCTCTTAAGTTCAAAACTATCTTTCTGATTCTGTTCACATTTACTTTCCTGTTTCATGACACATTG-CTTTT--T-ATGCTTT---TGATAT----------------------AT----ATA----C--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATGCAAGTAGGTTAAA
gi|43770 : ATATACTGACCCAGGTAAGGCA-TCTACCATTGCACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTT-AAGTTTTGG-TTTTTGCCTT-TAAGTCCCAAACCACCTTTCTGATTCTGTTCATATTTGCTTGCCTGCTTCATTACACATTG-CTTTT--T-ATGCTTT---TGATAT----------------------AT----ATA----T--------TGACCCTG-GTAAGCCAA-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43771 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-G----CAAGT--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTC-CAATCTCAA
gi|43772 : ATATATTGACCCAGGTAAGGCAATCTGCTATTAGACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAG-ATGTGTTT-ATGTCTT-GGTTTTTGTCTC-CAGGTACCAAACTACCTTTTTGA--CTGTTTACATTTGCTTTCCTACTTCATTACACATTG-ATTTT--T-ATGCATT---TGATAT----------------------AT----ATA----T--------TGACCCAG-GTAAGGC-A-TCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43773 : ATATATTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAAATTT--TGCG--TTTAGTT-GTGTTT-AAGTTTTGGAT-TTTGCCTC-CAAGTCCTAAACTACCTTTCTGATTCTGTTCACATTTACTTTTCTGCTTCATTACACATTG-CTTTT--T-ATGCTTT---TGAAATACAT------------------AT----ATA----T--------TGACCCAG-GTAAGG---------CATTGGACTTAGCCATGCAAGCAGGTTAAA
gi|43774 : ACATACTGACCTAAGTAAGGCAATCTACCCTTGTACAT---A-------G--------C-------------AA--------TAAACGTT--TGTG--TTTAGTTTGCTTTT-AAGTTTTGG-TTTTTGCCTC-TAAGTTCAAAACTATCTTTTTGATTCTGTTTACATTTGCTTTTCTGCTTTATTACACATTG--TTTT--T-ATGCATT---TGATAT----------------------AT----ATA----T--------TGACCCAG-GTAAGGCAA-TCTGCTATTAGACTTGGCCATACAAGCAGGTTAAA
gi|43775 : ATATATTGACCCAGGTAAGGCA--------TTGGACTT---A-------G--------CC---AT-G----CAAGC--AGGTTAAACTTT--TGTGAATTTA
gi|43776 : ATATATTGACCCAGGTAAGGCAATTCACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTGCG--TTT
gi|43777 : ATATATTGACCGAGGTAAGGCAATTTACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AAGTTAAACTTT--TGTG-----AGTTTta
gi|43778 : TTGGACTT---A-------G--------AC---AC------CAAA-----GTTAAACTTT--TGTG--TTTAGTT-GCGTTT-AAGTTTTGG-TGTTTGCCTC-CAATCTCA
gi|43779 : attttggcacagttatggccctttTGGCACAGGTAGGGCCCTTTA-----AGACTT---A-------ATTTTTCGTCT---GT-A----CACACCAAGGTTAAACTTT--TGTG--TTTAGAT-GCGTTT-AAGTTTTGG-TGTTTGCCTC-CAATCTCAA
gi|43780 : atttTGTCCTAGG-AAAGCTAT-TACCAT--GACAT---C-------G--------TC---GTCAGTGTCATCC--AGGTTAAACTTT--TGTG--TTAAG-TTGCATTT-AAGTTTT-GGTGTTTGCCTC-CAGCCTCAA
gi|43781 : TTGGACTT---AATTTTTCG--------TCTGTAG-A----CAACC--AAGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGGTTT-GGTGTTTGCCTC-TAATCTCAA
gi|43782 : TTGGACTTTTCG-------T--------CT---AT-AGA--CACCC--AGGTTAAACTTT--TGCG--TTTAG-TTGTGTTT-AAGTTTT-GGTGTTTGCCTC-CAATCTCA
gi|43783 : TTGGACTT---A-------G----------------A----CACCC--AGGTTAAACTTT--TGTG--TTTAGTT
gi|43784 : -A----CAACC--AAGTTAAACTTT--TGCG--TTTAG-TTGCGTTTAAAGTTT--GGTGTTTGCCTC-CAATCTCAA
gi|43785 : -A----CAGCC--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTC-CAATCTCA
gi|43786 : AACC--AGGTTAAACTTT--TGCG--TTTAG-TTGTGTTT-AAGTTTT-GGTGTTTGCCTC-CAATCTCAA
gi|43787 : C--AGGTTAAACTTT--TGTG--TTTA------------AGTTTTGG-TGTTTGCCTC-CAAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGT--T-ATGCTTT---TG--------------------------AT----ATA----C--------TGACCCAG-GTAAGGCAA-TCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43788 : C--AGGTTAAACTTT--TGCG--TTTAGTT-GCGTTT-AAGTTTTGG-TGTTTGCCTC-CAAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGT--T-ATGCTTT---TG--------------------------AT----ATA----C--------TGACCCAG-GTAAGGC-A-TCTACCATTGCACTTGGCCATACAAGCAGGTTAAA
gi|43789 : C--AGGTTAAACTTT--TGTG--TTTAGTT-GCGTT--AAGTTTTGG-TGTTTGCCTC-CAATCTCAA
gi|43790 : C--AGATTAAACTTT--TGCG--TTTA-TTTGCGTTT-AAGTTTT-GGTGTTTGTCTC-TAATCTCAA
gi|43791 : --AGGTTAAAATTT--TGCT--TTTAG-TTGCGTTT-AAGTTCTGG--TTTTGCCTC-CAAG-------------TCCTGATTCTGTTCACATTTGCTTTTCTACTTCATAACACATTG-CTTTT--A-ATGCTTT---TG--------------------------AT----ATA----
gi|43791 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAAtatatatatatatatatatatatatatatacaccaaggtaatgcaatctaccattggacttagccatacaagcaggttaaa
gi|43792 : aggttaaaattttgcttttagttgcgtttaagttctggttttgcctccaagtcctgattctgttcacatttgcttttctacttcataacacattgcttttaatgcttttgatatatatatatatatatatatatatatat--AGGTTAAACTTT--TGCA--TTTA------------AGTTTTTGGTTTTTGTCTC-CAAGTCTTAAACTATCTTTTTTATTCTGTTCACATTCGCTTT------------CACATTG-CTTTT--T-ATGCTTT---TG--------------------------ATATACATA----C--------TGACCTAA-GTAAGGCAA-TCTACCCTTGTACATAGCAATA
gi|43793 : TTAAAGTTT--TGTG--TTACGTTTGCGTTT-AAGTTTTAAG------CCTC-TGGGTCCAAAACTTTATTTCTGATTATGTTCTTGTTTGGTTTACTGCTTCATTTTGCATTG-CCTTCAAT-ATA-TATGGATG--------------------------AT----GT-----T--------TGCCTCAGTACAGGGCAA-TCTACCATCCAATCTAGC
gi|43794 : TT-AAGTTTTGG--TTTTACCTC-CAATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACACTGTTTTTT--T-ATGCCTT---TGATTTATAT------------------AT----ATA----T--------TGACCCAG-GTAAGGCAA-TTCACCATTGAACATGGCCATACAAGCAGGTTAAA
gi|43795 : TT-AAGTTTTGG--TTTTACCTC-CAATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-TTTTT--TTATGCTTT---TGATATATATATATATATATATATATATAT----ATA----T--------TGACCGAG-GTAAGGC-AATTTACCATTGAACATGGCCATACAAGCAAGTTAAA
Alignments
lowQualScore : 1 1 11111 444444444444444444444444444 2222222222222222222222 1
lowQualScore : 2 333 6666666 77777777 333 1 6666 1 22 11 11 1 2 1 44444 1 11 0 0 5 555555555555555555555555555 3333333333333333333333 99999999 2 0
lowQualScore : . ... ....... ........ ... . .... . .. .. .. . . . ..... . .. . . . ........................... ...................... ........ . .
lowQualScore : 2 777 8888888 66666666 777 9 7777 7 00 99 99 0 3 5 33333 5 55 7 2 3 555555555555555555555555555 7777777777777777777777 77777777 7 7
consensus : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTGTTTGCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
Reference ( family-639 ) : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTGTTTGCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43765 : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTT-AAGTTTTGTTTTTTTGCCTCT-AAGTTCAAAACCACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43766 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG-----AGTTT
gi|43767 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGCGTTT-AAGTTTTGGTT-TTTGTCTCT-AAGTTCAAAACTACCTTTCTGATTCTGTTCACATTTGTTTTCGTGCTTCATTACACATTG-CTTTTTGTGCTTTTG--------------------------ATATATA----------------------TC--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCAAACAAGCAGGTTAAA
gi|43768 : atATATCCTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AA-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCATTT-AAGTTTTGGTT-TTTGTCTCT-AAGTCCCAAGCTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CCTTTTGTGCTTTTGATAT----------------------ATATATA----------------------TA--------TTGA------GTAAAGCTATCTGCCATTGGACTTAGCC
gi|43769 : atATATATTGACCCTGGTAAGCCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCGTTT-AAGTTTTGGTTTTTTGCCTCTTAAGTTCAAAACTATCTTTCTGATTCTGTTCACATTTACTTTCCTGTTTCATGACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATGCAAGTAGGTTAAA
gi|43770 : ATATACTGACCCAGGTAAGGCA-TCTACCATTGCACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTT-AAGTTTTGGTT-TTTGCCTTT-AAGTCCCAAACCACCTTTCTGATTCTGTTCATATTTGCTTGCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------TTGACCCTG-GTAAGCCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43771 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-G----CAAGT--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCAA
gi|43772 : ATATATTGACCCAGGTAAGGCAATCTGCTATTAGACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGAT-GTGTTT-ATGTCTTGGTT-TTTGTCTCC-AGGTACCAAACTACCTTTTTGA--CTGTTTACATTTGCTTTCCTACTTCATTACACATTG-ATTTTTATGCATTTG--------------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43773 : ATATATTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAAATTT--TGCG--TTTAGTT-GTGTTT-AAGTTTTGGAT-TTTGCCTCC-AAGTCCTAAACTACCTTTCTGATTCTGTTCACATTTACTTTTCTGCTTCATTACACATTG-CTTTTTATGCTTTTGAAAT----------------------ACATATA----------------------TA--------TTGACCCAG-GTAAGG--------CATTGGACTTAGCCATGCAAGCAGGTTAAA
gi|43774 : ACATACTGACCTAAGTAAGGCAATCTACCCTTGTACAT---A-------G--------C-------------AA--------TAAACGTT--TGTG--TTTAGTTTGCTTTT-AAGTTTTGGTT-TTTGCCTCT-AAGTTCAAAACTATCTTTTTGATTCTGTTTACATTTGCTTTTCTGCTTTATTACACATTG--TTTTTATGCATTTG--------------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGCAATCTGCTATTAGACTTGGCCATACAAGCAGGTTAAA
gi|43775 : ATATATTGACCCAGGTAAGGCA--------TTGGACTT---A-------G--------CC---AT-G----CAAGC--AGGTTAAACTTT--TGTGAATTTA
gi|43776 : ATATATTGACCCAGGTAAGGCAATTCACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTGCG--TTT
gi|43777 : ATATATTGACCGAGGTAAGGCAATTTACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AAGTTAAACTTT--TGTG-----AGTTTta
gi|43778 : TTGGACTT---A-------G--------AC---AC------CAAA-----GTTAAACTTT--TGTG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCA
gi|43779 : attttggcacagttatggccctttTGGCACAGGTAGGGCCCTTTA-----AGACTT---A-------ATTTTTCGTCT---GT-A----CACACCAAGGTTAAACTTT--TGTG--TTTAGAT-GCGTTT-AAGTTTTGG-TGTTTGCCTCC-AATCTCAA
gi|43780 : atttTGTCCTAGG-AAAGCTAT-TACCAT--GACAT---C-------G--------TC---GTCAGTGTCATCC--AGGTTAAACTTT--TGTG--TTAAG-TTGCATTT-AAGTTTT-GGTGTTTGCCTCC-AGCCTCAA
gi|43781 : TTGGACTT---AATTTTTCG--------TCTGTAG-A----CAACC--AAGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGGTTT-GGTGTTTGCCTCT-AATCTCAA
gi|43782 : TTGGACTTTTCG-------T--------CT---AT-AGA--CACCC--AGGTTAAACTTT--TGCG--TTTAG-TTGTGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCA
gi|43783 : TTGGACTT---A-------G----------------A----CACCC--AGGTTAAACTTT--TGTG--TTTAGTT
gi|43784 : -A----CAACC--AAGTTAAACTTT--TGCG--TTTAG-TTGCGTTTAAAGTTT--GGTGTTTGCCTCC-AATCTCAA
gi|43785 : -A----CAGCC--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCA
gi|43786 : AACC--AGGTTAAACTTT--TGCG--TTTAG-TTGTGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCAA
gi|43787 : C--AGGTTAAACTTT--TGTG--TTTA------------AGTTTTGG-TGTTTGCCTCC-AAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43788 : C--AGGTTAAACTTT--TGCG--TTTAGTT-GCGTTT-AAGTTTTGG-TGTTTGCCTCC-AAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACCATTGCACTTGGCCATACAAGCAGGTTAAA
gi|43789 : C--AGGTTAAACTTT--TGTG--TTTAG-TTGCG-TT-AAGTTTT-GGTGTTTGCCTCC-AATCTCAA
gi|43790 : C--AGATTAAACTTT--TGCG--TTTA-TTTGCGTTT-AAGTTTT-GGTGTTTGTCTCT-AATCTCAA
gi|43791 : --AGGTTAAAATTT--TGCT--TTTAGTT-GCGTTT-AAGTTCTGG-T-TTTGCCTCC-AAG-------------TCCTGATTCTGTTCACATTTGCTTTTCTACTTCATAACACATTG-CTTTTAATGCTTTTGATATATATATATATATATATATATATATATATA----------------------TA--------C--ACCAAG-GTAATGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43792 : --AGGTTAAACTTT--TGCA--TTTA------------AGTTTTTGGTTTTTGTCTCC-AAGTCTTAAACTATCTTTTTTATTCTGTTCACATTCGCTTTC------------ACATTG-CTTTTTATGCTTTTG--------------------------ATATACA----------------------TA--------CTGACCTAA-GTAAGGCAATCTACCCTTGTACATAGCAATA
gi|43793 : TTAAAGTTT--TGTG--TTACGTTTGCGTTT-AAGTTTTAAG------CCTCT-GGGTCCAAAACTTTATTTCTGATTATGTTCTTGTTTGGTTTACTGCTTCATT-----TTG-CATT----GCCTTCA--------------------------ATATATA----------------------TGGATGATGTTTGCCTCAGTACAGGGCAATCTACCATCCAATCTAGC
gi|43794 : TT-AAGTTTTGG-T-TTTACCTCC-AATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACACTGTTTTTTTATGCCTTTGATTT----------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGCAATTCACCATTGAACATGGCCATACAAGCAGGTTAAA
gi|43795 : TT-AAGTTTTGG-T-TTTACCTCC-AATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTGTTTTTTTATGCTTTTG--------------------------ATATATATATATATATATATATATATATATA--------TTGACCGAG-GTAAGGCAATTTACCATTGAACATGGCCATACAAGCAAGTTAAA
Alignments
lowQualScore : 1 1 11111 444444444444444444444444444 2222222222222222222222 1
lowQualScore : 2 333 6666666 77777777 333 1 6666 1 22 11 11 1 2 1 44444 1 11 0 0 5 555555555555555555555555555 3333333333333333333333 99999999 2 0
lowQualScore : . ... ....... ........ ... . .... . .. .. .. . . . ..... . .. . . . ........................... ...................... ........ . .
lowQualScore : 2 777 8888888 66666666 777 9 7777 7 00 99 99 0 3 5 33333 5 55 7 2 3 555555555555555555555555555 7777777777777777777777 77777777 7 7
consensus : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTGTTTGCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
Reference ( family-639 ) : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTGTTTGCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43765 : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTT-AAGTTTTGTTTTTTTGCCTCT-AAGTTCAAAACCACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43766 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG-----AGTTT
gi|43767 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGCGTTT-AAGTTTTGGTT-TTTGTCTCT-AAGTTCAAAACTACCTTTCTGATTCTGTTCACATTTGTTTTCGTGCTTCATTACACATTG-CTTTTTGTGCTTTTG--------------------------ATATATA----------------------TC--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCAAACAAGCAGGTTAAA
gi|43768 : atATATCCTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AA-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCATTT-AAGTTTTGGTT-TTTGTCTCT-AAGTCCCAAGCTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CCTTTTGTGCTTTTGATAT----------------------ATATATA----------------------TA--------TTGA------GTAAAGCTATCTGCCATTGGACTTAGCC
gi|43769 : atATATATTGACCCTGGTAAGCCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCGTTT-AAGTTTTGGTTTTTTGCCTCTTAAGTTCAAAACTATCTTTCTGATTCTGTTCACATTTACTTTCCTGTTTCATGACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATGCAAGTAGGTTAAA
gi|43770 : ATATACTGACCCAGGTAAGGCA-TCTACCATTGCACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTT-AAGTTTTGGTT-TTTGCCTTT-AAGTCCCAAACCACCTTTCTGATTCTGTTCATATTTGCTTGCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------TTGACCCTG-GTAAGCCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43771 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-G----CAAGT--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCAA
gi|43772 : ATATATTGACCCAGGTAAGGCAATCTGCTATTAGACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGAT-GTGTTT-ATGTCTTGGTT-TTTGTCTCC-AGGTACCAAACTACCTTTTTGA--CTGTTTACATTTGCTTTCCTACTTCATTACACATTG-ATTTTTATGCATTTG--------------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43773 : ATATATTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAAATTT--TGCG--TTTAGTT-GTGTTT-AAGTTTTGGAT-TTTGCCTCC-AAGTCCTAAACTACCTTTCTGATTCTGTTCACATTTACTTTTCTGCTTCATTACACATTG-CTTTTTATGCTTTTGAAAT----------------------ACATATA----------------------TA--------TTGACCCAG-GTAAGG--------CATTGGACTTAGCCATGCAAGCAGGTTAAA
gi|43774 : ACATACTGACCTAAGTAAGGCAATCTACCCTTGTACAT---A-------G--------C-------------AA--------TAAACGTT--TGTG--TTTAGTTTGCTTTT-AAGTTTTGGTT-TTTGCCTCT-AAGTTCAAAACTATCTTTTTGATTCTGTTTACATTTGCTTTTCTGCTTTATTACACATTG--TTTTTATGCATTTG--------------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGCAATCTGCTATTAGACTTGGCCATACAAGCAGGTTAAA
gi|43775 : ATATATTGACCCAGGTAAGGCA--------TTGGACTT---A-------G--------CC---AT-G----CAAGC--AGGTTAAACTTT--TGTGAATTTA
gi|43776 : ATATATTGACCCAGGTAAGGCAATTCACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTGCG--TTT
gi|43777 : ATATATTGACCGAGGTAAGGCAATTTACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AAGTTAAACTTT--TGTG-----AGTTTta
gi|43778 : TTGGACTT---A-------G--------AC---AC------CAAA-----GTTAAACTTT--TGTG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCA
gi|43779 : attttggcacagttatggccctttTGGCACAGGTAGGGCCCTTTA-----AGACTT---A-------ATTTTTCGTCT---GT-A----CACACCAAGGTTAAACTTT--TGTG--TTTAGAT-GCGTTT-AAGTTTTGG-TGTTTGCCTCC-AATCTCAA
gi|43780 : atttTGTCCTAGG-AAAGCTAT-TACCAT--GACAT---C-------G--------TC---GTCAGTGTCATCC--AGGTTAAACTTT--TGTG--TTAAG-TTGCATTT-AAGTTTT-GGTGTTTGCCTCC-AGCCTCAA
gi|43781 : TTGGACTT---AATTTTTCG--------TCTGTAG-A----CAACC--AAGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGGTTT-GGTGTTTGCCTCT-AATCTCAA
gi|43782 : TTGGACTTTTCG-------T--------CT---AT-AGA--CACCC--AGGTTAAACTTT--TGCG--TTTAG-TTGTGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCA
gi|43783 : TTGGACTT---A-------G----------------A----CACCC--AGGTTAAACTTT--TGTG--TTTAGTT
gi|43784 : -A----CAACC--AAGTTAAACTTT--TGCG--TTTAG-TTGCGTTTAAAGTTT--GGTGTTTGCCTCC-AATCTCAA
gi|43785 : -A----CAGCC--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCA
gi|43786 : AACC--AGGTTAAACTTT--TGCG--TTTAG-TTGTGTTT-AAGTTTT-GGTGTTTGCCTCC-AATCTCAA
gi|43787 : C--AGGTTAAACTTT--TGTG--TTTA------------AGTTTTGG-TGTTTGCCTCC-AAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43788 : C--AGGTTAAACTTT--TGCG--TTTAGTT-GCGTTT-AAGTTTTGG-TGTTTGCCTCC-AAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACCATTGCACTTGGCCATACAAGCAGGTTAAA
gi|43789 : C--AGGTTAAACTTT--TGTG--TTTAG-TTGCG-TT-AAGTTTT-GGTGTTTGCCTCC-AATCTCAA
gi|43790 : C--AGATTAAACTTT--TGCG--TTTA-TTTGCGTTT-AAGTTTT-GGTGTTTGTCTCT-AATCTCAA
gi|43791 : --AGGTTAAAATTT--TGCT--TTTAGTT-GCGTTT-AAGTTCTGG-T-TTTGCCTCC-AAG-------------TCCTGATTCTGTTCACATTTGCTTTTCTACTTCATAACACATTG-CTTTTAATGCTTTTGATATATATATATATATATATATATATATATATA----------------------TA--------C--ACCAAG-GTAATGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43792 : --AGGTTAAACTTT--TGCA--TTTA------------AGTTTTTGGTTTTTGTCTCC-AAGTCTTAAACTATCTTTTTTATTCTGTTCACATTCGCTTTC------------ACATTG-CTTTTTATGCTTTTG--------------------------ATATACA----------------------TA--------CTGACCTAA-GTAAGGCAATCTACCCTTGTACATAGCAATA
gi|43793 : TTAAAGTTT--TGTG--TTACGTTTGCGTTT-AAGTTTTAAG------CCTCT-GGGTCCAAAACTTTATTTCTGATTATGTTCTTGTTTGGTTTACTGCTTCATT-----TTG-CATT----GCCTTCA--------------------------ATATATA----------------------TGGATGATGTTTGCCTCAGTACAGGGCAATCTACCATCCAATCTAGC
gi|43794 : TT-AAGTTTTGG-T-TTTACCTCC-AATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACACTGTTTTTTTATGCCTTTGATTT----------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGCAATTCACCATTGAACATGGCCATACAAGCAGGTTAAA
gi|43795 : TT-AAGTTTTGG-T-TTTACCTCC-AATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTGTTTTTTTATGCTTTTG--------------------------ATATATATATATATATATATATATATATATA--------TTGACCGAG-GTAAGGCAATTTACCATTGAACATGGCCATACAAGCAAGTTAAA
blockSeqs : A TTC ATTTTTC TTTTTCGT TGT C GTGT G CA TG AA T T A GGTTT T GT T ATATATATATATATATATATATATATA TATATATATATATATATATATA GATGATGT T T
blockSeqs : A . . . . . GA G . . . T T . TGGTT . GT T ATATA . . . A
blockSeqs : A . . . . . . G . . . T T . GGTT . GT . AAATA . . . A
blockSeqs : A . . . . . . G . . . T T . GGTT . GT . ATTTA . . . A
blockSeqs : A . . . . . . G . . . T T . GGTT . TC . A . . . A
blockSeqs : A . . . . . . G . . . A T . GGTG . GT . A . . . A
blockSeqs : C . . . . . . G . . . T T . GGTT . GT . A . . . A
blockSeqs : A . . . . . . G . . . T T . GGAT . GT . A . . . A
blockSeqs : . . . . . . . G . . . T T . GGTT . TC . A . . . A
blockSeqs : . . . . . . . G . . . A T . GGTG . TC . A . . . .
blockSeqs : . . . . . . . G . . . T T . GGTG . CC . A . . . .
blockSeqs : . . . . . . . A . . . T T . GGTG . TC . A . . . .
blockSeqs : . . . . . . . A . . . T T . GGTG . TC . . . . . .
blockSeqs : . . . . . . . C . . . T T . GGTG . TC . . . . . .
blockSeqs : . . . . . . C . . . T T . GGTG . TC
blockSeqs : . . . . . . C . . . . T . GGTG . TC
blockSeqs : . . . . . . C . . . . T . GGTG . GT
blockSeqs : . . . . . . C . . . . T . GGTG . GT
blockSeqs : . . C . . . . . . GGTG . TC
blockSeqs : . . C . . . . . . GGTG . TC
blockSeqs : . . . . . . . GGTG . GT
blockSeqs : . . . . . . GGT . GT
blockSeqs : . . . . . . AAG . TT
blockSeqs : . . . . . . GGT . TT
blockSeqs : . . . . . . GGT . G
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : GGTG* A**************************
originalCons : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGGTGTTTGCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
finalCons : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTT-AAGTTTTGGTG-TTTGCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTGA--------------------------TATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
Alignments
lowQualScore : 1 1 444444444444444444444444444 2222222222222222222222 1
lowQualScore : 2 333 6666666 77777777 333 1 6666 1 22 11 11 7 1 5 1 1 11 0 0 5 555555555555555555555555555 3333333333333333333333 99999999 2 0
lowQualScore : . ... ....... ........ ... . .... . .. .. .. . . . . . .. . . . ........................... ...................... ........ . .
lowQualScore : 2 777 8888888 66666666 777 9 7777 7 00 99 99 3 5 4 5 5 55 7 2 3 555555555555555555555555555 7777777777777777777777 77777777 7 7
consensus : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTTAAGTTTTG-GTGTTT-GCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
Reference ( family-639 ) : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGTTTGCGTTTAAGTTTTG-GTGTTT-GCCTCC-AANCTCAAAACTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43765 : ATATACTGACCCAGGTAAGGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTTAAGTTTTGTTTTTTT-GCCTCT-AAGTTCAAAACCACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43766 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG-----AGTTT
gi|43767 : ATATAC--ACCAAGGTAATGCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGCGTTTAAGTTTTG-GTTTTT-GTCTCT-AAGTTCAAAACTACCTTTCTGATTCTGTTCACATTTGTTTTCGTGCTTCATTACACATTG-CTTTTTGTGCTTTTG--------------------------ATATATA----------------------TC--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCAAACAAGCAGGTTAAA
gi|43768 : atATATCCTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AA-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCATTTAAGTTTTG-GTTTTT-GTCTCT-AAGTCCCAAGCTACCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTG-CCTTTTGTGCTTTTGATAT----------------------ATATATA----------------------TA--------TTGA------GTAAAGCTATCTGCCATTGGACTTAGCC
gi|43769 : atATATATTGACCCTGGTAAGCCAATCTACCATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAACTTA--TGTG--TTTAGTTTGCGTTTAAGTTTTG-GTTTTTTGCCTCTTAAGTTCAAAACTATCTTTCTGATTCTGTTCACATTTACTTTCCTGTTTCATGACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATGCAAGTAGGTTAAA
gi|43770 : ATATACTGACCCAGGTAAGGCA-TCTACCATTGCACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGTG--TTTAGTTTGTGTTTAAGTTTTG-GTTTTT-GCCTTT-AAGTCCCAAACCACCTTTCTGATTCTGTTCATATTTGCTTGCCTGCTTCATTACACATTG-CTTTTTATGCTTTTG--------------------------ATATATA----------------------TA--------TTGACCCTG-GTAAGCCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43771 : ATATACTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-G----CAAGT--AGGTTAAACTTT--TGCG--TTTAG-TTGCGTTTAAGTTTTG-GTGTTT-GCCTCC-AATCTCAA
gi|43772 : ATATATTGACCCAGGTAAGGCAATCTGCTATTAGACTT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTT--TGCG--TTTAGAT-GTGTTTATGTCTTG-GTTTTT-GTCTCC-AGGTACCAAACTACCTTTTTGA--CTGTTTACATTTGCTTTCCTACTTCATTACACATTG-ATTTTTATGCATTTG--------------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGC-ATCTACTATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43773 : ATATATTGACCCAGGTAAGGCA-TCTACTATTGGACTT---A-------G--------CC---AT-A----CAAGC--AGGTTAAAATTT--TGCG--TTTAGTT-GTGTTTAAGTTTTG-GATTTT-GCCTCC-AAGTCCTAAACTACCTTTCTGATTCTGTTCACATTTACTTTTCTGCTTCATTACACATTG-CTTTTTATGCTTTTGAAAT----------------------ACATATA----------------------TA--------TTGACCCAG-GTAAGG--------CATTGGACTTAGCCATGCAAGCAGGTTAAA
gi|43774 : ACATACTGACCTAAGTAAGGCAATCTACCCTTGTACAT---A-------G--------C-------------AA--------TAAACGTT--TGTG--TTTAGTTTGCTTTTAAGTTTTG-GTTTTT-GCCTCT-AAGTTCAAAACTATCTTTTTGATTCTGTTTACATTTGCTTTTCTGCTTTATTACACATTG--TTTTTATGCATTTG--------------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGCAATCTGCTATTAGACTTGGCCATACAAGCAGGTTAAA
gi|43775 : ATATATTGACCCAGGTAAGGCA--------TTGGACTT---A-------G--------CC---AT-G----CAAGC--AGGTTAAACTTT--TGTGAATTTA
gi|43776 : ATATATTGACCCAGGTAAGGCAATTCACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AGGTTAAACTTTTGTGCG--TTT
gi|43777 : ATATATTGACCGAGGTAAGGCAATTTACCATTGAACAT---G-------G--------CC---AT-A----CAAGC--AAGTTAAACTTT--TGTG-----AGTTTta
gi|43778 : TTGGACTT---A-------G--------AC---AC------CAAA-----GTTAAACTTT--TGTG--TTTAGTT-GCGTTTAAGTTTTG-GTGTTT-GCCTCC-AATCTCA
gi|43779 : attttggcacagttatggccctttTGGCACAGGTAGGGCCCTTTA-----AGACTT---A-------ATTTTTCGTCT---GT-A----CACACCAAGGTTAAACTTT--TGTG--TTTAGAT-GCGTTTAAGTTTTG-GTGTTT-GCCTCC-AATCTCAA
gi|43780 : atttTGTCCTAGG-AAAGCTAT-TACCAT--GACAT---C-------G--------TC---GTCAGTGTCATCC--AGGTTAAACTTT--TGTG--TTAAGTT-GCATTTAAGTTTTG-GTGTTT-GCCTCC-AGCCTCAA
gi|43781 : TTGGACTT---AATTTTTCG--------TCTGTAG-A----CAACC--AAGTTAAACTTT--TGCG--TTTAGTT-GCGTTTAAGGTTTG-GTGTTT-GCCTCT-AATCTCAA
gi|43782 : TTGGACTTTTCG-------T--------CT---AT-AGA--CACCC--AGGTTAAACTTT--TGCG--TTTAGTT-GTGTTTAAGTTTTG-GTGTTT-GCCTCC-AATCTCA
gi|43783 : TTGGACTT---A-------G----------------A----CACCC--AGGTTAAACTTT--TGTG--TTTAGTT
gi|43784 : -A----CAACC--AAGTTAAACTTT--TGCG--TTTAGTT-GCGTTTAAAGTTTG-GTGTTT-GCCTCC-AATCTCAA
gi|43785 : -A----CAGCC--AGGTTAAACTTT--TGCG--TTTAGTT-GCGTTTAAGTTTTG-GTGTTT-GCCTCC-AATCTCA
gi|43786 : AACC--AGGTTAAACTTT--TGCG--TTTAGTT-GTGTTTAAGTTTTG-GTGTTT-GCCTCC-AATCTCAA
gi|43787 : C--AGGTTAAACTTT--TGTG--TTT-----------AAGTTTTG-GTGTTT-GCCTCC-AAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43788 : C--AGGTTAAACTTT--TGCG--TTTAGTT-GCGTTTAAGTTTTG-GTGTTT-GCCTCC-AAGTCCTTAACTTTCTTTCTGATTCTATTCACATTTACTTTCCTGCTTCATTACACATTG-CTTGTTATGCTTTTG------------------------------ATA----------------------TA--------CTGACCCAG-GTAAGGC-ATCTACCATTGCACTTGGCCATACAAGCAGGTTAAA
gi|43789 : C--AGGTTAAACTTT--TGTG--TTTAGTT-GCGTT-AAGTTTTG-GTGTTT-GCCTCC-AATCTCAA
gi|43790 : C--AGATTAAACTTT--TGCG--TTTA-TTTGCGTTTAAGTTTTG-GTGTTT-GTCTCT-AATCTCAA
gi|43791 : --AGGTTAAAATTT--TGCT--TTTAGTT-GCGTTTAAGTTCTG-GT-TTT-GCCTCC-AAG-------------TCCTGATTCTGTTCACATTTGCTTTTCTACTTCATAACACATTG-CTTTTAATGCTTTTGATATATATATATATATATATATATATATATATA----------------------TA--------C--ACCAAG-GTAATGCAATCTACCATTGGACTTAGCCATACAAGCAGGTTAAA
gi|43792 : --AGGTTAAACTTT--TGCA--TTTAA-----GTTT-----TTG-GTTTTT-GTCTCC-AAGTCTTAAACTATCTTTTTTATTCTGTTCACATTCGCTTTC------------ACATTG-CTTTTTATGCTTTTG--------------------------ATATACA----------------------TA--------CTGACCTAA-GTAAGGCAATCTACCCTTGTACATAGCAATA
gi|43793 : TTAAAGTTT--TGTG--TTACGTTTGCGTTTAAGTTTTA-A------GCCTCT-GGGTCCAAAACTTTATTTCTGATTATGTTCTTGTTTGGTTTACTGCTTCATT-----TTG-CATT----GCCTTCA--------------------------ATATATA----------------------TGGATGATGTTTGCCTCAGTACAGGGCAATCTACCATCCAATCTAGC
gi|43794 : TTAAGTTTTG-GT-TTT-ACCTCC-AATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACACTGTTTTTTTATGCCTTTGATTT----------------------ATATATA----------------------TA--------TTGACCCAG-GTAAGGCAATTCACCATTGAACATGGCCATACAAGCAGGTTAAA
gi|43795 : TTAAGTTTTG-GT-TTT-ACCTCC-AATTCCTAAACTATCTTTCTGATTCTGTTCACATTTGCTTTCCTGCTTCATTACACATTGTTTTTTTATGCTTTTG--------------------------ATATATATATATATATATATATATATATATA--------TTGACCGAG-GTAAGGCAATTTACCATTGAACATGGCCATACAAGCAAGTTAAA