lowQualScore : 1111111111111
lowQualScore : 1 9999999999999 7 22 777777 22 444 33 222 5 66
lowQualScore : . ............. . .. ...... .. ... .. ... . ..
lowQualScore : 7 8888888888888 6 00 777777 11 444 99 999 4 11
consensus : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACTATGTCACATCCATTTTG---TAAAGTTTAACT--AAATAA
Reference ( gi|105976 ) : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACTATGTCACATCCATTTTG---TAAAGCTTAACT--AAATAA
gi|105978 : TTAT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAGATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACTATGTCACATCCATTTTG---TAA
gi|105979 : TTAT-ATCAATGTCTATAATAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAGGTCTATGTCACATCCATTTTG---TAAAGTTTTCCT--GAAGAAgttaagct
gi|105980 : TTAT-ACCAATGTCTGTAATAAACTCTTTT-TTTCCCC-----ACAAATATTCGGCTTTCGCCTTCTTCAAGAAAATCACA--G------T--C---TTTTAAGAACTATGTCACATCCATTTTG---TAAAGCTTA-----AAATA
gi|105981 : TTAT-ATCAATGTCAATAATTAACTCCTTT-T--TC-------ACAAATTTTGGGCTTTCGCCTTCTTCAGGAAAAGCGCA--G------T--C---TTTTAAGGACTATGTCATATCAATTTTG---TAAAGTTTGACT--AAATAA
gi|105982 : TTTT-ATCAATGTCTACATTGAACTCCTTT-TTT-C-------AAAAATGTTCAGCTAGCGCCTTCTTCAGGAAAATTGCA--G------T--C---TTTTAAAAACTATGTCACATCCATATTG---TAAAGGTTAACT--TAATAA
gi|105977 : TTAT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTCCGCCTTCTTCCGGAAAATCGCA--G------T--C---TTTTAAGGAC
gi|105983 : TTATTATCAATGGCTATAATAAACACTTTT-TT--C-------ACAAATTTTCGGATAACGCCTTCTTCAGGAAA-TTGCA--G------T--C---TATTAATAACTATGTCACATCCATTTTG---TAAAATTTAACT--AAATAA
gi|105984 : TTAT-ATCAACATCTGTATTAAACTC--TT-TCTTCG------ACA---TTTCGGCTCATGCCTTTATCAGGATAATAGCA--A------T--TACGTTTTAAAAACTAAGTCACATCCATCGTG---TAAAG
gi|105985 : TCAT-ATCAATGTCTCTAATAAACTCTTTT-TT-----------CAAATGTTCGGCTTACGCCTTCATCAGGAAAATAACA--A------T--t
gi|105986 : TAT-ATCAATGTTTATATTAAACTCTTTT--TTTC-------ACATATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACTATGTCACATCCATTTTG---TAAAGCTTAACT--AAATAA
gi|105987 : TAT-ACCAATGTCTATAATAAACT-TTTT-TTTCC-------AAAAATTTTCGGCTTTCACCTTCTTCAGGAAAATCGTA--G------T--C---TTTTAAGGACAATGTCACATCCATTTTG---TAAAGTTTAACT--AAATAA
gi|105988 : AT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTCCGCCTCCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACTATGTCACATCCGTTTTG---TAAAGCTTAACT--
gi|105989 : AT-ATCAATGTCTATATTAAATTCTTTT---TTC-------ACAAATGTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAAAACTGTGCCACATCCATTTTG---TAAAGTTTAACT--ACAT
gi|105991 : AT-ATCAATGTCTTTATTAAATTATTTT-TTTTC-------ACAAGTTTTCGGCTAACGCCTTCATTAGGAAAATCGCA--G------T--C---TTTTAAAATCTATGTCACATCCATTTTG---TAAAGTTTAACTCAAAAT
gi|105990 : AT-ATCAATGTCTATATTAAATTCTTTT-TTTTTTTTTTTTACAAATTTTCAGCTTACGCCTTTTGCAGGAAAATCGTA--G------T--C---TTTTAAAAACTATGTCACATACATTTTG---TAAAGTTTAACT--
gi|105993 : AT-ACCAATGACTATATTAAACTCTTTTTTTTTC-------ACAAACTTTCGGCTTACGCCTTTTTCAGGAAAATCTCA--G------T--C---TTTTAAAAACTATGTCACATCCA
gi|105992 : AT-ATGAATGCCTATATTAAACTCATTT-TTT-C-------GCAGATTTTCGGCTTATGCCATTTTCAGGAAAATCGCA--G------C--C---TTTTAAAATATATGTCACATCCATTTTGAGTTAAA-CTTTACA--AAATagttaaacttta
gi|105994 : AT-ATCAATGTCTATATTAAAATCTTTT-AT-----------CAAATTTTCGGCTTACGTCTTCATCAGGAAAATAGCA--A------TAACG--TTTTAAAAACTAAGTCACATCCATCTTG---TA
gi|105995 : AT-ACCAACGTCTATATTAAACTCTTTT-TTTT---------CAAATTTTCGGCTTATGCTTTCATCAGAAAAATAGCA--ATATTTTT--T---TTTT----ACTAAGCCACATTCATTTTG---Ttggtgttaaaaaata
gi|105996 : AT-ACCAATGTCTATATTAAACTCTTTT-TTT----------CAAATTTTCCTCTTATGCCTTCATCAGGAAAATTGCA--tgagt
gi|105997 : AT-ACCAATATCTATATTCAACCCTTTT-TT-----------CAAATTTCAGGTTTATGCCTTTATAAGGAAAATAGCA--aaaaaaatatttc
gi|105998 : T-ATCAATGTCTATAGTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAA
gi|105999 : T-ACCAATGTTTATATTAAATTATTTT-TAT----------CAAATTTCCCGGTTATGCCTTCATCAGGAAAATAGCA--T------T--T---TTTTTA--ACTAAGTCACATCCATTTTG---TAAA---TAAAT--AAACAActttacaaaatggatgtgacat
gi|106000 : -ATCAATGTCTAAATTAAACTCTATT-TT-----------CATATTTTCTTCTTCCGCCTTCATCAGGAAAAT
gi|106001 : CAATAT--ATAATGAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGAACTATGTCACATCCATTTTG---AAAAGTTTAAC
gi|106002 : ATGTTTATATTAAACTCTTTT-TT-----------CAAATTTTCGGCTTACGCCTTCTTTAGGAAAATAGCA--ATATT--T--T---TTTTAAAATCTAAATCACATCAATTTTG---TAAA
gi|106003 : CTATAATAAACTCTTTT-ATGTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGTT--G------T--C---TTTTAAAGACTATGTCACATCCATTTTG---TAAAGTTTAACT--AAATAAatccttccaatttttaacttaataa
gi|106004 : CTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACTATGTCACATCCATTTTG---TAAAGTTTGACT--
gi|106005 : CGCCTTCATCAGGAAAATAGCAATG------T--T---TTTTAAAAACTAAGTCACGTTCATTTTG---TAAAG--TAATTTAAAATAA
gi|106006 : ATCGCA--G------T--C---TTTTAAAAACTATCATACATCCATTGTG---TAAAGTTTAACT--
gi|105998 : ATGTCACATCCATTTTG---TAAAGTTTTCCT--GAAGAA
Alignments
lowQualScore : 1111111111111
lowQualScore : 1 7777777777777 1 11 666666 11 333 22 222 77777777777 1 55
lowQualScore : . ............. . .. ...... .. ... .. ... ........... . ..
lowQualScore : 6 7777777777777 0 88 999999 99 999 00 888 66666666666 6 22
consensus : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
Reference ( family-633 ) : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|105976 : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTAACT--AAATAA
gi|105977 : TTAT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTCCGCCTTCTTCCGGAAAATCGCA--G------T--C---TTTTAAGGAC
gi|105978 : TTAT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAGATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACT--ATGTCACATCCATTTTG---T-AAG-----------T-TAAGCT--
gi|105979 : TTAT-ATCAATGTCTATAATAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAGGTCT--ATGTCACATCCATTTTG---TAAAG-----------T-TTTCCT--GAAGAA
gi|105980 : TTAT-ACCAATGTCTGTAATAAACTCTTTT-TTTCCCC-----ACAAATATTCGGCTTTCGCCTTCTTCAAGAAAATCACA--G------T--C---TTTTAAGAACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTA-----AAATA
gi|105981 : TTAT-ATCAATGTCAATAATTAACTCCTTT-T--TC-------ACAAATTTTGGGCTTTCGCCTTCTTCAGGAAAAGCGCA--G------T--C---TTTTAAGGACT--ATGTCATATCAATTTTG---TAAAG-----------T-TTGACT--AAATAA
gi|105982 : TTTT-ATCAATGTCTACATTGAACTCCTTT-TTT-C-------AAAAATGTTCAGCTAGCGCCTTCTTCAGGAAAATTGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATATTG---TAAAG-----------G-TTAACT--TAATAA
gi|105983 : TTATTATCAATGGCTATAATAAACACTTTT-TT--C-------ACAAATTTTCGGATAACGCCTTCTTCAGGAAA-TTGCA--G------T--C---TATTAATAACT--ATGTCACATCCATTTTG---TAAAA-----------T-TTAACT--AAATAA
gi|105984 : TTAT-ATCAACATCTGTATTAAACTCTTTC-TT--CG------ACA---TTTCGGCTCATGCCTTTATCAGGATAATAGCA--A------T--TACGTTTTAAAAACT--AAGTCACATCCATCGTG---TAAAG-----------T-
gi|105985 : TCAT-ATCAATGTCTCTAATAAACTCTTTT-TT-----------CAAATGTTCGGCTTACGCCTTCATCAGGAAAATAACA--A------T--
gi|105986 : TAT-ATCAATGTTTATATTAAACTCTTTT--TTTC-------ACATATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTAACT--AAATAA
gi|105987 : TAT-ACCAATGTCTATAATAAACT-TTTT-TTTCC-------AAAAATTTTCGGCTTTCACCTTCTTCAGGAAAATCGTA--G------T--C---TTTTAAGGACA--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|105988 : AT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTCCGCCTCCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACT--ATGTCACATCCGTTTTG---TAAAG-----------C-TTAACT--
gi|105989 : AT-ATCAATGTCTATATTAAATTCTTTT---TTC-------ACAAATGTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAAAACT--GTGCCACATCCATTTTG---TAAAG-----------T-TTAACT--ACAT
gi|105990 : AT-ATCAATGTCTATATTAAATTCTTTT-TTTTTTTTTTTTACAAATTTTCAGCTTACGCCTTTTGCAGGAAAATCGTA--G------T--C---TTTTAAAAACT--ATGTCACATACATTTTG---TAAAG-----------T-TTAACT--
gi|105991 : AT-ATCAATGTCTTTATTAAATTATTTT-TTTTC-------ACAAGTTTTCGGCTAACGCCTTCATTAGGAAAATCGCA--G------T--C---TTTTAAAATCT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACTCAAAAT
gi|105992 : AT-ATGAATGCCTATATTAAACTCATTT-TTT-C-------GCAGATTTTCGGCTTATGCCATTTTCAGGAAAATCGCA--G------C--C---TTTTAAAATAT--ATGTCACATCCATTTTGAGTTAAAC-----------T-TT-ACA--AAAT
gi|105993 : AT-ACCAATGACTATATTAAACTCTTTTTTTTTC-------ACAAACTTTCGGCTTACGCCTTTTTCAGGAAAATCTCA--G------T--C---TTTTAAAAACT--ATGTCACATCCAAGT-----TAAAC-----------T-TTA
gi|105994 : AT-ATCAATGTCTATATTAAAATCTTTT-AT-----------CAAATTTTCGGCTTACGTCTTCATCAGGAAAATAGCA--A------TAACG--TTTTAAAAACT--AAGTCACATCCATCTTG---TATGG-----------TGTTAAA---AAATA
gi|105995 : AT-ACCAACGTCTATATTAAACTCTTTT-TTTTC-------A--AATTTTCGGCTTATGCTTTCATCAGAAAAATAGCA--ATATTTTT--T---TTTT----ACT--AAGCCACATTCATTTTG---TTGAG-----------T-
gi|105996 : AT-ACCAATGTCTATATTAAACTCTTTT-TTT----------CAAATTTTCCTCTTATGCCTTCATCAGGAAAATTGCA--A-----------------AAAAAAT--ATTTC
gi|105997 : AT-ACCAATATCTATATTCAACCCTTTT-TT-----------CAAATTTCAGGTTTATGCCTTTATAAGGAAAATAGCA--
gi|105998 : T-ATCAATGTCTATAGTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAA---------------------CTTTACAAAATGGATGTGACAT
gi|105999 : T-ACCAATGTTTATATTAAATTATTTT-TAT----------CAAATTTCCCGGTTATGCCTTCATCAGGAAAATAGCA--T------T--T---TTTT--TAACT--AAGTCACATCCATTTTG---TAAA---------------TAAAT--AAACAA
gi|106000 : -ATCAATGTCTAAATTAAACTCTATT-TT-----------CATATTTTCTTCTTCCGCCTTCATCAGGAAAAT
gi|106001 : CAATAT--ATAATGAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGAACT--ATGTCACATCCATTTTG---AAAAG-----------T-TTAAC
gi|106002 : ATGTTTATATTAAACTCTTTT-TT-----------CAAATTTTCGGCTTACGCCTTCTTTAGGAAAATAGCA--ATATT--T--T---TTTTAAAATCT--AAATCACATCAATTTTG---TAAAATCCTTCCAATTT-TTAACT--TAATAA
gi|106003 : CTATAATAAACTCTTTT-ATGTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGTT--G------T--C---TTTTAAAGACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|106004 : CTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTGACT--
gi|106005 : CGCCTTCATCAGGAAAATAGCAATG------T--T---TTTTAAAAACT--AAGTCACGTTCATTTTG---TAAAG--------------TAATTTAAAATAA
gi|106006 : ATCGCA--G------T--C---TTTTAAAAACT--ATCATACATCCATTGTG---TAAAG-----------T-TTAACT--
Alignments
lowQualScore : 1111111111111
lowQualScore : 1 7777777777777 1 11 666666 11 333 22 222 77777777777 1 55
lowQualScore : . ............. . .. ...... .. ... .. ... ........... . ..
lowQualScore : 6 7777777777777 0 88 999999 99 999 00 888 66666666666 6 22
consensus : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
Reference ( family-633 ) : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|105976 : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTAACT--AAATAA
gi|105977 : TTAT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTCCGCCTTCTTCCGGAAAATCGCA--G------T--C---TTTTAAGGAC
gi|105978 : TTAT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAGATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACT--ATGTCACATCCATTTTG---T-AAG-----------T-TAAGCT--
gi|105979 : TTAT-ATCAATGTCTATAATAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAGGTCT--ATGTCACATCCATTTTG---TAAAG-----------T-TTTCCT--GAAGAA
gi|105980 : TTAT-ACCAATGTCTGTAATAAACTCTTTT-TTTCCCC-----ACAAATATTCGGCTTTCGCCTTCTTCAAGAAAATCACA--G------T--C---TTTTAAGAACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTA-----AAATA
gi|105981 : TTAT-ATCAATGTCAATAATTAACTCCTTT-T--TC-------ACAAATTTTGGGCTTTCGCCTTCTTCAGGAAAAGCGCA--G------T--C---TTTTAAGGACT--ATGTCATATCAATTTTG---TAAAG-----------T-TTGACT--AAATAA
gi|105982 : TTTT-ATCAATGTCTACATTGAACTCCTTT-TTT-C-------AAAAATGTTCAGCTAGCGCCTTCTTCAGGAAAATTGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATATTG---TAAAG-----------G-TTAACT--TAATAA
gi|105983 : TTATTATCAATGGCTATAATAAACACTTTT-TT--C-------ACAAATTTTCGGATAACGCCTTCTTCAGGAAA-TTGCA--G------T--C---TATTAATAACT--ATGTCACATCCATTTTG---TAAAA-----------T-TTAACT--AAATAA
gi|105984 : TTAT-ATCAACATCTGTATTAAACTCTTTC-TT--CG------ACA---TTTCGGCTCATGCCTTTATCAGGATAATAGCA--A------T--TACGTTTTAAAAACT--AAGTCACATCCATCGTG---TAAAG-----------T-
gi|105985 : TCAT-ATCAATGTCTCTAATAAACTCTTTT-TT-----------CAAATGTTCGGCTTACGCCTTCATCAGGAAAATAACA--A------T--
gi|105986 : TAT-ATCAATGTTTATATTAAACTCTTTT--TTTC-------ACATATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTAACT--AAATAA
gi|105987 : TAT-ACCAATGTCTATAATAAACT-TTTT-TTTCC-------AAAAATTTTCGGCTTTCACCTTCTTCAGGAAAATCGTA--G------T--C---TTTTAAGGACA--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|105988 : AT-ATCAATGTCTATATTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTCCGCCTCCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACT--ATGTCACATCCGTTTTG---TAAAG-----------C-TTAACT--
gi|105989 : AT-ATCAATGTCTATATTAAATTCTTTT---TTC-------ACAAATGTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAAAACT--GTGCCACATCCATTTTG---TAAAG-----------T-TTAACT--ACAT
gi|105990 : AT-ATCAATGTCTATATTAAATTCTTTT-TTTTTTTTTTTTACAAATTTTCAGCTTACGCCTTTTGCAGGAAAATCGTA--G------T--C---TTTTAAAAACT--ATGTCACATACATTTTG---TAAAG-----------T-TTAACT--
gi|105991 : AT-ATCAATGTCTTTATTAAATTATTTT-TTTTC-------ACAAGTTTTCGGCTAACGCCTTCATTAGGAAAATCGCA--G------T--C---TTTTAAAATCT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACTCAAAAT
gi|105992 : AT-ATGAATGCCTATATTAAACTCATTT-TTT-C-------GCAGATTTTCGGCTTATGCCATTTTCAGGAAAATCGCA--G------C--C---TTTTAAAATAT--ATGTCACATCCATTTTGAGTTAAAC-----------T-TT-ACA--AAAT
gi|105993 : AT-ACCAATGACTATATTAAACTCTTTTTTTTTC-------ACAAACTTTCGGCTTACGCCTTTTTCAGGAAAATCTCA--G------T--C---TTTTAAAAACT--ATGTCACATCCAAGT-----TAAAC-----------T-TTA
gi|105994 : AT-ATCAATGTCTATATTAAAATCTTTT-AT-----------CAAATTTTCGGCTTACGTCTTCATCAGGAAAATAGCA--A------TAACG--TTTTAAAAACT--AAGTCACATCCATCTTG---TATGG-----------TGTTAAA---AAATA
gi|105995 : AT-ACCAACGTCTATATTAAACTCTTTT-TTTTC-------A--AATTTTCGGCTTATGCTTTCATCAGAAAAATAGCA--ATATTTTT--T---TTTT----ACT--AAGCCACATTCATTTTG---TTGAG-----------T-
gi|105996 : AT-ACCAATGTCTATATTAAACTCTTTT-TTT----------CAAATTTTCCTCTTATGCCTTCATCAGGAAAATTGCA--A-----------------AAAAAAT--ATTTC
gi|105997 : AT-ACCAATATCTATATTCAACCCTTTT-TT-----------CAAATTTCAGGTTTATGCCTTTATAAGGAAAATAGCA--
gi|105998 : T-ATCAATGTCTATAGTAAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAA---------------------CTTTACAAAATGGATGTGACAT
gi|105999 : T-ACCAATGTTTATATTAAATTATTTT-TAT----------CAAATTTCCCGGTTATGCCTTCATCAGGAAAATAGCA--T------T--T---TTTT--TAACT--AAGTCACATCCATTTTG---TAAA---------------TAAAT--AAACAA
gi|106000 : -ATCAATGTCTAAATTAAACTCTATT-TT-----------CATATTTTCTTCTTCCGCCTTCATCAGGAAAAT
gi|106001 : CAATAT--ATAATGAACTCTTTT--TTTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGAACT--ATGTCACATCCATTTTG---AAAAG-----------T-TTAAC
gi|106002 : ATGTTTATATTAAACTCTTTT-TT-----------CAAATTTTCGGCTTACGCCTTCTTTAGGAAAATAGCA--ATATT--T--T---TTTTAAAATCT--AAATCACATCAATTTTG---TAAAATCCTTCCAATTT-TTAACT--TAATAA
gi|106003 : CTATAATAAACTCTTTT-ATGTC-------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGTT--G------T--C---TTTTAAAGACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|106004 : CTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTGACT--
gi|106005 : CGCCTTCATCAGGAAAATAGCAATG------T--T---TTTTAAAAACT--AAGTCACGTTCATTTTG---TAAAG--------------TAATTTAAAATAA
gi|106006 : ATCGCA--G------T--C---TTTTAAAAACT--ATCATACATCCATTGTG---TAAAG-----------T-TTAACT--
blockSeqs : T TTTTTTTTTTTT C AT TATTTT AA ACG GG AGT TCCTTCCAATT G CA
blockSeqs : . TTTCCCC C . TATT . G . . . . TA
blockSeqs : . TTTTTC T . . . . . . . . .
blockSeqs : . TTTCC T . . . . . . . . .
blockSeqs : . TTTTC T . . . . . . . . .
blockSeqs : . TTTTC G . . . . . . . . .
blockSeqs : . ATGTC A . . . . . . . . .
blockSeqs : . TTTC A . . . . . . . . .
blockSeqs : . TTTC A . . . . . . . . .
blockSeqs : . TTTC C . . . . . . . . .
blockSeqs : . TTTC T . . . . . . . . .
blockSeqs : . TTCG C . . . . . . . . .
blockSeqs : . TTTC T . . . . . . . . .
blockSeqs : . TTTC A . . . . . . . . .
blockSeqs : . TTTC A . . . . . . . . .
blockSeqs : . TTTC A . . . . . . . . .
blockSeqs : . TTTC A . . . . . . . . .
blockSeqs : . TTC A . . . . . . . . .
blockSeqs : . TTC A . . . . . . . . .
blockSeqs : . TTC A . . . . . . . . .
blockSeqs : . TTT A . . . . . . . .
blockSeqs : . TAT T . . . . . . . .
blockSeqs : . TT A . . . . . . . .
blockSeqs : . AT C . . . . . . . .
blockSeqs : TT T . . . . .
blockSeqs : TT A . . . . .
blockSeqs : TT T . . . .
blockSeqs : T . . .
blockSeqs : .
blockSeqCons : TTTC*********
originalCons : TTAT-ATCAATGTCTATATTAAACTCTTTT-TTTTC-------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
finalCons : TTAT-ATCAATGTCTATATTAAACTCTTTTTTTC---------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
Alignments
lowQualScore : 1 1 44 8888888888 1 11 666666 11 333 22 222 77777777777 1 55
lowQualScore : . . .. .......... . .. ...... .. ... .. ... ........... . ..
lowQualScore : 6 4 88 5555555555 0 88 999999 99 999 00 888 66666666666 6 22
consensus : TTAT-ATCAATGTCTATATTAAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
Reference ( family-633 ) : TTAT-ATCAATGTCTATATTAAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTNCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|105976 : TTAT-ATCAATGTCTATATTAAACT-CTTTTT-TTTC--------ACAAATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTAACT--AAATAA
gi|105977 : TTAT-ATCAATGTCTATATTAAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTCCGCCTTCTTCCGGAAAATCGCA--G------T--C---TTTTAAGGAC
gi|105978 : TTAT-ATCAATGTCTATATTAAACT-CTTTT--TTTC--------ACAGATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACT--ATGTCACATCCATTTTG---T-AAG-----------T-TAAGCT--
gi|105979 : TTAT-ATCAATGTCTATAATAAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAGGTCT--ATGTCACATCCATTTTG---TAAAG-----------T-TTTCCT--GAAGAA
gi|105980 : TTAT-ACCAATGTCTGTAATAAACT-CTTTT--TTTCCCC-----ACAAATATTCGGCTTTCGCCTTCTTCAAGAAAATCACA--G------T--C---TTTTAAGAACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTA-----AAATA
gi|105981 : TTAT-ATCAATGTCAATAATTAACT-CCTTT--T-TC--------ACAAATTTTGGGCTTTCGCCTTCTTCAGGAAAAGCGCA--G------T--C---TTTTAAGGACT--ATGTCATATCAATTTTG---TAAAG-----------T-TTGACT--AAATAA
gi|105982 : TTTT-ATCAATGTCTACATTGAACT-CCTTT--TTTC--------AAAAATGTTCAGCTAGCGCCTTCTTCAGGAAAATTGCA--G------T--C---TTTTAAAAACT--ATGTCACATCCATATTG---TAAAG-----------G-TTAACT--TAATAA
gi|105983 : TTATTATCAATGGCTATAATAAACA-CTTTT--TT-C--------ACAAATTTTCGGATAACGCCTTCTTCAGGAAA-TTGCA--G------T--C---TATTAATAACT--ATGTCACATCCATTTTG---TAAAA-----------T-TTAACT--AAATAA
gi|105984 : TTAT-ATCAACATCTGTATTAAACT-CTTTC--TTCG--------ACA---TTTCGGCTCATGCCTTTATCAGGATAATAGCA--A------T--TACGTTTTAAAAACT--AAGTCACATCCATCGTG---TAAAG-----------T-
gi|105985 : TCAT-ATCAATGTCTCTAATAAACT-CTTTT--TT-----------CAAATGTTCGGCTTACGCCTTCATCAGGAAAATAACA--A------T--
gi|105986 : TAT-ATCAATGTTTATATTAAACT-CTTTT--TTTC--------ACATATTTTCGGCTTCCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------C-TTAACT--AAATAA
gi|105987 : TAT-ACCAATGTCTATAATAAACT-TTTTT--TTCC--------AAAAATTTTCGGCTTTCACCTTCTTCAGGAAAATCGTA--G------T--C---TTTTAAGGACA--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|105988 : AT-ATCAATGTCTATATTAAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTCCGCCTCCTTCAGGAAAATCGCA--G------T--C---TTTTAAAGACT--ATGTCACATCCGTTTTG---TAAAG-----------C-TTAACT--
gi|105989 : AT-ATCAATGTCTATATTAAATT-CTTTT---TTC--------ACAAATGTTCGGCTTTCGCCTTCTTCATGAAAATCGCA--G------T--C---TTTTAAAAACT--GTGCCACATCCATTTTG---TAAAG-----------T-TTAACT--ACAT
gi|105990 : AT-ATCAATGTCTATATTAAATT-CTTTT--TTTTTTTTTTTTACAAATTTTCAGCTTACGCCTTTTGCAGGAAAATCGTA--G------T--C---TTTTAAAAACT--ATGTCACATACATTTTG---TAAAG-----------T-TTAACT--
gi|105991 : AT-ATCAATGTCTTTATTAAATTATTTTT--TTTC--------ACAAGTTTTCGGCTAACGCCTTCATTAGGAAAATCGCA--G------T--C---TTTTAAAATCT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACTCAAAAT
gi|105992 : AT-ATGAATGCCTATATTAAACT-CATTT--TTTC--------GCAGATTTTCGGCTTATGCCATTTTCAGGAAAATCGCA--G------C--C---TTTTAAAATAT--ATGTCACATCCATTTTGAGTTAAAC-----------T-TT-ACA--AAAT
gi|105993 : AT-ACCAATGACTATATTAAACT-CTTTTTTTTTC--------ACAAACTTTCGGCTTACGCCTTTTTCAGGAAAATCTCA--G------T--C---TTTTAAAAACT--ATGTCACATCCAAGT-----TAAAC-----------T-TTA
gi|105994 : AT-ATCAATGTCTATATTAAAAT-CTTTT--AT-----------CAAATTTTCGGCTTACGTCTTCATCAGGAAAATAGCA--A------TAACG--TTTTAAAAACT--AAGTCACATCCATCTTG---TATGG-----------TGTTAAA---AAATA
gi|105995 : AT-ACCAACGTCTATATTAAACT-CTTTT--TTTT---------CAAATTTTCGGCTTATGCTTTCATCAGAAAAATAGCA--ATATTTTT--T---TTTT----ACT--AAGCCACATTCATTTTG---TTGAG-----------T-
gi|105996 : AT-ACCAATGTCTATATTAAACT-CTTTT--TTT----------CAAATTTTCCTCTTATGCCTTCATCAGGAAAATTGCA--A-----------------AAAAAAT--ATTTC
gi|105997 : AT-ACCAATATCTATATTCAACC-CTTTT--TT-----------CAAATTTCAGGTTTATGCCTTTATAAGGAAAATAGCA--
gi|105998 : T-ATCAATGTCTATAGTAAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAA---------------------CTTTACAAAATGGATGTGACAT
gi|105999 : T-ACCAATGTTTATATTAAATT-ATTTT--TATC--------A--AATTTCCCGGTTATGCCTTCATCAGGAAAATAGCA--T------T--T---TTTT--TAACT--AAGTCACATCCATTTTG---TAAA---------------TAAAT--AAACAA
gi|106000 : -ATCAATGTCTAAATTAAACT-CTATT--TT-----------CATATTTTCTTCTTCCGCCTTCATCAGGAAAAT
gi|106001 : CAATAT--ATAATGAACT-CTTTT--TTTC--------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGAACT--ATGTCACATCCATTTTG---AAAAG-----------T-TTAAC
gi|106002 : ATGTTTATATTAAACT-CTTTT--TT-----------CAAATTTTCGGCTTACGCCTTCTTTAGGAAAATAGCA--ATATT--T--T---TTTTAAAATCT--AAATCACATCAATTTTG---TAAAATCCTTCCAATTT-TTAACT--TAATAA
gi|106003 : CTATAATAAACT-CTTTTA-TGTC--------ACAAATTTTCGGCTTTCGCCTTCTTCAGGAAAATCGTT--G------T--C---TTTTAAAGACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTAACT--AAATAA
gi|106004 : CTTTCGCCTTCTTCAGGAAAATCGCA--G------T--C---TTTTAAGGACT--ATGTCACATCCATTTTG---TAAAG-----------T-TTGACT--
gi|106005 : CGCCTTCATCAGGAAAATAGCAATG------T--T---TTTTAAAAACT--AAGTCACGTTCATTTTG---TAAAG--------------TAATTTAAAATAA
gi|106006 : ATCGCA--G------T--C---TTTTAAAAACT--ATCATACATCCATTGTG---TAAAG-----------T-TTAACT--