lowQualScore : 11111111111 11 1 3 111111111
lowQualScore : 222 555555555 6666666666 44444444444 444 222 0 8 1 55555 44 7 2 3 4 6 5 777777777 4
lowQualScore : ... ......... .......... ........... ... ... . . . ..... .. . . . . . . ......... .
lowQualScore : 777 777777777 2222222222 11111111111 666 444 8 2 8 66666 66 8 5 9 0 2 4 888888888 2
consensus : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------C-----N-----CAGTTACCAAAGG--CATA---TAGCGGGTTACAAA-TGGACTT-----ACTTGTGCAGAGGTGC-TACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
Reference ( gi|41226 ) : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------C-----T-----CAGTTACCAAAGG--TATA---TAACGGGATACAAA-TGGACTT-----ACTTGTGCAGAGGTGC-TAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATACTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41228 : TTTTTCTAGGATACCTA---AGACATATAACAA---------GTAAC----------C-----T-----CAGTTACAAAAGG--TATA---TAACGGGATACAAAATGGACTT-----ACTTGTGCAGAGCTGC-TAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATATTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41229 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------C-----T-----CAGTTACCAAAGG--TATA---TAACGGGATACAAA-TGGACTT-----ACTTTTGCAGA-GTGC-TAC-TTTTGTGT-CATATCTATTTTT-GTTTAGGGAATAAATTGCCCCCAAATA-TTTTTTATGTG---------TTTCATTAATTAAATATCAGTGTAACAGTCTTT
gi|41227 : TTTTTCTAGGATACCAA---ATACATATAACAA---------GTAAC----------C-----T-----CAGTTACCAAAGG--TATA---TAGCAGGATACAAA-TGGACTT-----ACTTGTGCAGAAGTGC-TAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTAATGTG---------TTTCA-AAATTATGTATCAGTGCAACAGTCT
gi|41230 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTTAC----------C-----T-----CAGTTACCAAAGG--TATA---AAGCGGTATACTAA-TAGACTT-----ACTTATGAAGAGGTGC-TGC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAATTACCATCAAATA-TTTTTAATGTG---------TTTCACAAATTATATATCAGTGTAACAGTCTTT
gi|41231 : TTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------C-----T-----CAGTTACCAAAGG--TATA---TAACGGGATACAAA-TGGACTT-----ACTTGTGCAGAGGTGC-TAC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAGTTGCAACCAAATA-TTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41232 : TTTCTAGGATAGCAA---AGACATATAACAA---------GTAAC----------C-----T-----CAGTTA----------------TAGCAGGATACAAA-TGGACTTTATATACTTGTGCAGAGGTGC-TAC-TTTTGTGT-CAAATCTATTTTT-GTTTATGGAATAAATTGTCACCAAATA-TTTTAAATGTG---------TTTCATAAATTATATATCAGCGTAATAGTCTTT
gi|41233 : TAAGGTACCAA---AGACATGTAACAA---------GTAAC----------A-----A-----CAGTTACTAAAGA--CATAATTTAGCGGG-------------TT-----ACTTGTGCAGAGGTGC-ATT-TTTTGGGC-CATAT
gi|41234 : TAAGTTACCAA---AAACATGTAACTA---------GTAAC----------C-----A-----CAGTTACTAAAGT--CATG---TAAC
gi|41235 : AGGTTACCAA---ACATATATAACAA---------ATAAC----------C-----A-----CAGTTACCTAAGA--CATA---TAGTGGGTTACAAA-TGGACTG-----AATTGTACAGAGATGC--ACATTTTGGGC-CATAT
gi|41236 : GGTACCAA---AGACATATAACAAATTTCTTAAGTAAC----------C-----T-----CAGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGGACTC-----ACTTGTGCAGAGGTGC--ACATTTTGTGC-CATATCTAT
gi|41237 : TACCAA---AGACACATAACAA---------GTAGC----------C-----T-----CGGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGGACTT-----ACTTGTGTAGAGGTGC--ACATTTTGatcaatctattgaactaatatttttaa
gi|41238 : TACAAT---AGAAATATAACAA---------GTAAC----------C-----A-----CAGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGGACTT-----ACTTGTGCAGAGGTGC--ACATTTTGGGC-C--ATATATGTTCAGTTTAAACCACCATTTGTCCCAAAATA-TTATTTAAGTGGTGTAAGAATTTCATCA---ATATACCA
gi|41239 : TACCAA---AGATATACAGCAA---------GTAACAACAATTAACC-----A-----CAGTTACCAAAGA--CATA---TAGTGGGTTACAAA-TGGACAT-----ACTTTTGCAGATGTG--TACATTTTGGGT-CATAT
gi|41241 : TACCAA---AAATATGTAGCAA---------GTAAC----------CACAGTTAGCCACAGTTACCAAAGACATATA---TAGCAGGTTACAAA-CGGACAT-----ACTTGTGCAGAGGTGCACAT-TTTTG
gi|41242 : TACCAA---AAACATATATTAA---------GCAAC----------C-----C-----TAGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGGAC
gi|41240 : TACCAA---AAACATATATCAA---------GTAAA----------C-----A-----TAGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGGAC
gi|41243 : TACCAA---AGGCATGTAACAA---------ATAAC----------C-----A-----CAGTTACCAAAGG--CATG---TAAC
gi|41244 : TACCAA---ACACATGTAACAA---------GTAAC----------C-----A-----CAGTTACAAAAGG--CATG---TAAC
gi|41245 : TACCAA---AAACATGTAACAA---------GTAAC----------C-----A-----CAGTTACAAAAGG--CATG---TGAC
gi|41246 : TACAAA---AGGCATGTAACAA---------GTAAC----------C-----A-----CAGTTACCAAAGG--CAT----------GATACAAG-T
gi|41247 : TACAAA---AGGCATGTGACAA---------GTAAC----------C-----A-----CAGTTACCAAAGG--CATG---TA
gi|41248 : TACTAA---AGTCATGTAACAA---------ATAAC----------C-----A-----CAGTCACCAAAGG--CATG---TAAC
gi|41249 : ACCAACTGAGACATATAACAA---------GTAAC----------C-----A-----CAGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGTACTT-----ACTTCTACAGAGGTGC--ACATTTTTTGTACAAA---ATTTTA-GT
gi|41250 : ATCAA---AACCATATAACCA---------GTAAC----------A-----C-----TAGTTACCAAAGG--CATA---TAGTGGGTTACAAA-TGGAC
gi|41251 : ACCAA---AGGCATGTAACAA---------GTAAC----------C-----A-----CAGTTACCAAAGG--CATG---TA
gi|41252 : CCAA---AGACATGTAACAA---------GTAAC----------C-----A-----CAGTTACCAAAGG--CATG---TAAC
gi|41253 : ATATAACAA---------GTAAC----------C-----T-----TAGTTACCAAAGG--TATA---TAATGGGATACAAA-TGGACTT-----ACTTGTGCAGAGGTGC-TAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCATCAAATA-TTTTTAATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41254 : A---------GTAAC----------C-----A-----CAATTACCTAAGG--CATA---CAGTAGGTTACAAA-TGAACTT-----ACTTGTCCAGAAGTGC--ACATTTTTTGC-CATATCTAT
gi|41255 : TACCAAAGG--CATA---TAGTGGGTAACAAA-TGGACTC-----ACTTGTGCAGAGGTGC--ACATTTTGTGC-CATAT
gi|41256 : TACAAA-TGGACTT-----ACTTGTGCAGAGGTGC-TAC-TTTTGTGT-AAAATCTATTTTT-GTTTAGGGAATAAATTGCCACTGAATA-TTTTTAATGTG---------GTTCATAAATTATATATCAGTGTAACAGTCTTT
Alignments
lowQualScore : 1 1 111111111
lowQualScore : 222 555555555 6666666666 1 5555555555 1 222 11 3 1 55555 4 5 2 1 3 8 1 666666666 1
lowQualScore : ... ......... .......... . .......... . ... .. . . ..... . . . . . . . ......... .
lowQualScore : 666 555555555 0000000000 0 8888888888 3 333 99 2 8 33333 2 6 4 0 6 0 0 000000000 0
consensus : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CACAGTTA----------CCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
Reference ( family-629 ) : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CNCAGTTA----------CCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
gi|41226 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTCAGTTA----------CCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATACTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41227 : TTTTTCTAGGATACCAA---ATACATATAACAA---------GTAAC----------CTCAGTTA----------CCAAAGGTAT-A---TA--GCAGGATAC-AAATGGACTT-----ACTTGTGCAGAAGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTAATGTG---------TTTCA-AAATTATGTATCAGTGCAACAGTCT
gi|41228 : TTTTTCTAGGATACCTA---AGACATATAACAA---------GTAAC----------CTCAGTTA----------CAAAAGGTAT-A---TA--ACGGGATACAAAATGGACTT-----ACTTGTGCAGAGCTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATATTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41229 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTCAGTTA----------CCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTTTGCAGAG-TGCTAC-TTTTGTGT-CATATCTATTTTT-GTTTAGGGAATAAATTGCCCCCAAATA-TTTTTTATGTG---------TTTCATTAATTAAATATCAGTGTAACAGTCTTT
gi|41230 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTTAC----------CTCAGTTA----------CCAAAGGTAT-A---AA--GCGGTATAC-TAATAGACTT-----ACTTATGAAGAGGTGCTGC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAATTACCATCAAATA-TTTTTAATGTG---------TTTCACAAATTATATATCAGTGTAACAGTCTTT
gi|41231 : TTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTCAGTTA----------CCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAGTTGCAACCAAATA-TTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41232 : TTTCTAGGATAGCAA---AGACATATAACAA---------GTAAC----------CTCAGTTA-------------------------TA--GCAGGATAC-AAATGGACTTTATATACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTATGGAATAAATTGTCACCAAATA-TTTTAAATGTG---------TTTCATAAATTATATATCAGCGTAATAGTCTTT
gi|41233 : TAAGGTACCAA---AGACATGTAACAA---------GTAAC----------AACAGTTA----------CTAAAGACAT-AATTTA--GCGGG-------------TT-----ACTTGTGCAGAGGTGC-ATTTTTTGGGC-CATAT
gi|41234 : TAAGTTACCAA---AAACATGTAACTA---------GTAAC----------CACAGTTA----------CTAAAGTCAT-G---TA--AC
gi|41235 : AGGTTACCAA---ACATATATAACAA---------ATAAC----------CACAGTTA----------CCTAAGACAT-A---TA--GTGGGTTAC-AAATGGACTG-----AATTGTACAGAGATGC-ACATTTTGGGC-CATAT
gi|41236 : GGTACCAA---AGACATATAACAAATTTCTTAAGTAAC----------CTCAGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATATCTAT
gi|41237 : TACCAA---AGACACATAACAA---------GTAGC----------CTCGGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGTAGAGGTGC-ACATTTTGatcaatctattgaactaatatttttaa
gi|41238 : TACAAT---AGAAATATAACAA---------GTAAC----------CACAGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGC-ACATTTTGGGC-CATA--TATGTTCAGTTTAAACCACCATTTGTCCCAAAATA-TTATTTAAGTGGTGTAAGAATTTCATCA---ATATACCA
gi|41239 : TACCAA---AGATATACAGCAA---------GTAACAACAATTAACCACAGTTA----------CCAAAGACAT-A---TA--GTGGGTTAC-AAATGGACAT-----ACTTTTGCAGATGTG-TACATTTTGGGT-CATAT
gi|41240 : TACCAA---AAACATATATCAA---------GTAAA----------CATAGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41241 : TACCAA---AAATATGTAGCAA---------GTAAC----------CACAGTTAGCCACAGTTACCAAAGACAT-A---TATAGCAGGTTAC-AAACGGACAT-----ACTTGTGCAGAGGTGC-ACATTTT
gi|41242 : TACCAA---AAACATATATTAA---------GCAAC----------CCTAGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACtg
gi|41243 : TACCAA---AGGCATGTAACAA---------ATAAC----------CACAGTTA----------CCAAAGGCAT-G---TA--AC
gi|41244 : TACCAA---ACACATGTAACAA---------GTAAC----------CACAGTTA----------CAAAAGGCAT-G---TA--AC
gi|41245 : TACCAA---AAACATGTAACAA---------GTAAC----------CACAGTTA----------CAAAAGGCAT-G---T
gi|41246 : TACAAA---AGGCATGTAACAA---------GTAAC----------CACAGTTA----------CCAAAGGCATGA---TA--gac
gi|41247 : TACAAA---AGGCATGTGACAA---------GTAAC----------CACAGTTA----------CCAAAGGCAT-G---TA--caagt
gi|41248 : TACTAA---AGTCATGTAACAA---------ATAAC----------CACAGTCA----------CCAAAGGCAT-G---TA--AC
gi|41249 : ACCAACTGAGACATATAACAA---------GTAAC----------CACAGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGTACTT-----ACTTCTACAGAGGTGC-ACATTTTTTGTACAAA---ATTTTA-GT
gi|41250 : ATCAA---AACCATATAACCA---------GTAAC----------ACTAGTTA----------CCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41251 : ACCAA---AGGCATGTAACAA---------GTAAC----------CACAGTTA----------CCAAAGGCAT-G---TA--
gi|41252 : CCAA---AGACATGTAACAA---------GTAAC----------CACAGTTA----------CCAAAGGCAT-G---TA--AC
gi|41253 : ATATAACAA---------GTAAC----------CTTAGTTA----------CCAAAGGTAT-A---TA--ATGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCATCAAATA-TTTTTAATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41254 : A---------GTAAC----------CACAATTA----------CCTAAGGCAT-A---CA--GTAGGTTAC-AAATGAACTT-----ACTTGTCCAGAAGTGC-ACATTTTTTGC-CATATCTAT
gi|41255 : TA----------CCAAAGGCAT-A---TA--GTGGGTAAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATAT
gi|41256 : TAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-AAAATCTATTTTT-GTTTAGGGAATAAATTGCCACTGAATA-TTTTTAATGTG---------GTTCATAAATTATATATCAGTGTAACAGTCTTT
Alignments
lowQualScore : 1 1 111111111
lowQualScore : 222 555555555 6666666666 0 1 5555555555 1 222 11 3 1 55555 4 5 2 1 3 8 1 666666666 1
lowQualScore : ... ......... .......... . . .......... . ... .. . . ..... . . . . . . . ......... .
lowQualScore : 666 555555555 0000000000 8 4 8888888888 3 333 99 2 8 33333 2 6 4 0 6 0 0 000000000 0
consensus : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
Reference ( family-629 ) : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
gi|41226 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATACTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41227 : TTTTTCTAGGATACCAA---ATACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--GCAGGATAC-AAATGGACTT-----ACTTGTGCAGAAGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTAATGTG---------TTTCA-AAATTATGTATCAGTGCAACAGTCT
gi|41228 : TTTTTCTAGGATACCTA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACAAAAGGTAT-A---TA--ACGGGATACAAAATGGACTT-----ACTTGTGCAGAGCTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATATTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41229 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTTTGCAGAG-TGCTAC-TTTTGTGT-CATATCTATTTTT-GTTTAGGGAATAAATTGCCCCCAAATA-TTTTTTATGTG---------TTTCATTAATTAAATATCAGTGTAACAGTCTTT
gi|41230 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTTAC----------CTC-AGTT----------ACCAAAGGTAT-A---AA--GCGGTATAC-TAATAGACTT-----ACTTATGAAGAGGTGCTGC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAATTACCATCAAATA-TTTTTAATGTG---------TTTCACAAATTATATATCAGTGTAACAGTCTTT
gi|41231 : TTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAGTTGCAACCAAATA-TTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41232 : TTTCTAGGATAGCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------A---------------TA--GCAGGATAC-AAATGGACTTTATATACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTATGGAATAAATTGTCACCAAATA-TTTTAAATGTG---------TTTCATAAATTATATATCAGCGTAATAGTCTTT
gi|41233 : TAAGGTACCAA---AGACATGTAACAA---------GTAAC----------AAC-AGTT----------ACTAAAGACAT-AATTTA--GCGGG-------------TT-----ACTTGTGCAGAGGTGC-ATTTTTTGGGC-CATAT
gi|41234 : TAAGTTACCAA---AAACATGTAACTA---------GTAAC----------CAC-AGTT----------ACTAAAGTCAT-G---TA--AC
gi|41235 : AGGTTACCAA---ACATATATAACAA---------ATAAC----------CAC-AGTT----------ACCTAAGACAT-A---TA--GTGGGTTAC-AAATGGACTG-----AATTGTACAGAGATGC-ACATTTTGGGC-CATAT
gi|41236 : GGTACCAA---AGACATATAACAAATTTCTTAAGTAAC----------CTC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATATCTAT
gi|41237 : TACCAA---AGACACATAACAA---------GTAGC----------CTC-GGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGTAGAGGTGC-ACATTTTGatcaatctattgaactaatatttttaa
gi|41238 : TACAAT---AGAAATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGC-ACATTTTGGGC-CATA--TATGTTCAGTTTAAACCACCATTTGTCCCAAAATA-TTATTTAAGTGGTGTAAGAATTTCATCA---ATATACCA
gi|41239 : TACCAA---AGATATACAGCAA---------GTAACAACAATTAACCAC-AGTT----------ACCAAAGACAT-A---TA--GTGGGTTAC-AAATGGACAT-----ACTTTTGCAGATGTG-TACATTTTGGGT-CATAT
gi|41240 : TACCAA---AAACATATATCAA---------GTAAA----------CAT-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41241 : TACCAA---AAATATGTAGCAA---------GTAAC----------CAC-AGTTAGCCACAGTTACCAAAGACAT-A---TATAGCAGGTTAC-AAACGGACAT-----ACTTGTGCAGAGGTGC-ACATTTT
gi|41242 : TACCAA---AAACATATATTAA---------GCAAC----------CCT-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACtg
gi|41243 : TACCAA---AGGCATGTAACAA---------ATAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--AC
gi|41244 : TACCAA---ACACATGTAACAA---------GTAAC----------CAC-AGTT----------ACAAAAGGCAT-G---TA--AC
gi|41245 : TACCAA---AAACATGTAACAA---------GTAAC----------CAC-AGTT----------ACAAAAGGCAT-G---T
gi|41246 : TACAAA---AGGCATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCATGA---TA--gac
gi|41247 : TACAAA---AGGCATGTGACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--caagt
gi|41248 : TACTAA---AGTCATGTAACAA---------ATAAC----------CAC-AGTC----------ACCAAAGGCAT-G---TA--AC
gi|41249 : ACCAACTGAGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGTACTT-----ACTTCTACAGAGGTGC-ACATTTTTTGTACAAA---ATTTTA-GT
gi|41250 : ATCAA---AACCATATAACCA---------GTAAC-----------ACTAGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41251 : ACCAA---AGGCATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--
gi|41252 : CCAA---AGACATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--AC
gi|41253 : ATATAACAA---------GTAAC----------CTT-AGTT----------ACCAAAGGTAT-A---TA--ATGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCATCAAATA-TTTTTAATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41254 : A---------GTAAC----------CAC-AATT----------ACCTAAGGCAT-A---CA--GTAGGTTAC-AAATGAACTT-----ACTTGTCCAGAAGTGC-ACATTTTTTGC-CATATCTAT
gi|41255 : T----------ACCAAAGGCAT-A---TA--GTGGGTAAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATAT
gi|41256 : TAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-AAAATCTATTTTT-GTTTAGGGAATAAATTGCCACTGAATA-TTTTTAATGTG---------GTTCATAAATTATATATCAGTGTAACAGTCTTT
Alignments
lowQualScore : 1 1 111111111
lowQualScore : 222 555555555 6666666666 0 1 5555555555 1 222 11 3 1 55555 4 5 2 1 3 8 1 666666666 1
lowQualScore : ... ......... .......... . . .......... . ... .. . . ..... . . . . . . . ......... .
lowQualScore : 666 555555555 0000000000 8 4 8888888888 3 333 99 2 8 33333 2 6 4 0 6 0 0 000000000 0
consensus : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
Reference ( family-629 ) : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
gi|41226 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATACTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41227 : TTTTTCTAGGATACCAA---ATACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--GCAGGATAC-AAATGGACTT-----ACTTGTGCAGAAGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTAATGTG---------TTTCA-AAATTATGTATCAGTGCAACAGTCT
gi|41228 : TTTTTCTAGGATACCTA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACAAAAGGTAT-A---TA--ACGGGATACAAAATGGACTT-----ACTTGTGCAGAGCTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATATTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41229 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTTTGCAGAG-TGCTAC-TTTTGTGT-CATATCTATTTTT-GTTTAGGGAATAAATTGCCCCCAAATA-TTTTTTATGTG---------TTTCATTAATTAAATATCAGTGTAACAGTCTTT
gi|41230 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTTAC----------CTC-AGTT----------ACCAAAGGTAT-A---AA--GCGGTATAC-TAATAGACTT-----ACTTATGAAGAGGTGCTGC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAATTACCATCAAATA-TTTTTAATGTG---------TTTCACAAATTATATATCAGTGTAACAGTCTTT
gi|41231 : TTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAGTTGCAACCAAATA-TTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41232 : TTTCTAGGATAGCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------A---------------TA--GCAGGATAC-AAATGGACTTTATATACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTATGGAATAAATTGTCACCAAATA-TTTTAAATGTG---------TTTCATAAATTATATATCAGCGTAATAGTCTTT
gi|41233 : TAAGGTACCAA---AGACATGTAACAA---------GTAAC----------AAC-AGTT----------ACTAAAGACAT-AATTTA--GCGGG-------------TT-----ACTTGTGCAGAGGTGC-ATTTTTTGGGC-CATAT
gi|41234 : TAAGTTACCAA---AAACATGTAACTA---------GTAAC----------CAC-AGTT----------ACTAAAGTCAT-G---TA--AC
gi|41235 : AGGTTACCAA---ACATATATAACAA---------ATAAC----------CAC-AGTT----------ACCTAAGACAT-A---TA--GTGGGTTAC-AAATGGACTG-----AATTGTACAGAGATGC-ACATTTTGGGC-CATAT
gi|41236 : GGTACCAA---AGACATATAACAAATTTCTTAAGTAAC----------CTC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATATCTAT
gi|41237 : TACCAA---AGACACATAACAA---------GTAGC----------CTC-GGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGTAGAGGTGC-ACATTTTGatcaatctattgaactaatatttttaa
gi|41238 : TACAAT---AGAAATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGC-ACATTTTGGGC-CATA--TATGTTCAGTTTAAACCACCATTTGTCCCAAAATA-TTATTTAAGTGGTGTAAGAATTTCATCA---ATATACCA
gi|41239 : TACCAA---AGATATACAGCAA---------GTAACAACAATTAACCAC-AGTT----------ACCAAAGACAT-A---TA--GTGGGTTAC-AAATGGACAT-----ACTTTTGCAGATGTG-TACATTTTGGGT-CATAT
gi|41240 : TACCAA---AAACATATATCAA---------GTAAA----------CAT-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41241 : TACCAA---AAATATGTAGCAA---------GTAAC----------CAC-AGTTAGCCACAGTTACCAAAGACAT-A---TATAGCAGGTTAC-AAACGGACAT-----ACTTGTGCAGAGGTGC-ACATTTT
gi|41242 : TACCAA---AAACATATATTAA---------GCAAC----------CCT-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACtg
gi|41243 : TACCAA---AGGCATGTAACAA---------ATAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--AC
gi|41244 : TACCAA---ACACATGTAACAA---------GTAAC----------CAC-AGTT----------ACAAAAGGCAT-G---TA--AC
gi|41245 : TACCAA---AAACATGTAACAA---------GTAAC----------CAC-AGTT----------ACAAAAGGCAT-G---T
gi|41246 : TACAAA---AGGCATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCATGA---TA--gac
gi|41247 : TACAAA---AGGCATGTGACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--caagt
gi|41248 : TACTAA---AGTCATGTAACAA---------ATAAC----------CAC-AGTC----------ACCAAAGGCAT-G---TA--AC
gi|41249 : ACCAACTGAGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGTACTT-----ACTTCTACAGAGGTGC-ACATTTTTTGTACAAA---ATTTTA-GT
gi|41250 : ATCAA---AACCATATAACCA---------GTAAC-----------ACTAGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41251 : ACCAA---AGGCATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--
gi|41252 : CCAA---AGACATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--AC
gi|41253 : ATATAACAA---------GTAAC----------CTT-AGTT----------ACCAAAGGTAT-A---TA--ATGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCATCAAATA-TTTTTAATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41254 : A---------GTAAC----------CAC-AATT----------ACCTAAGGCAT-A---CA--GTAGGTTAC-AAATGAACTT-----ACTTGTCCAGAAGTGC-ACATTTTTTGC-CATATCTAT
gi|41255 : T----------ACCAAAGGCAT-A---TA--GTGGGTAAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATAT
gi|41256 : TAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-AAAATCTATTTTT-GTTTAGGGAATAAATTGCCACTGAATA-TTTTTAATGTG---------GTTCATAAATTATATATCAGTGTAACAGTCTTT
blockSeqs : CTG ATTTCTTAA AACAATTAAC T AGCCACAGTT G ATT TA A A TATAT T T A A A T A GTGTAAGAA A
blockSeqs : . . . . . . . . A . . T A . A . . T . T
blockSeqs : . . . . . . . . A . . T A . T . . T . T
blockSeqs : . . . . . . . . A . . T A . A . . A . A
blockSeqs : . . . . . . . . A . . T A . A . . T . T
blockSeqs : . . . . . . . . A . . T A . A . . A . A
blockSeqs : . . . . . . . . T . . T A . T . . T . C
blockSeqs : . . . . . . . . T . . T A . T . . A . T
blockSeqs : . . . . . . . . T . . T A . T . . A . A
blockSeqs : . . . . . . . . T . . . A . T .
blockSeqs : . . . . . . . . T . . . . . T
blockSeqs : . . . . . . . . T . . . . . A
blockSeqs : . . . . . . . . T . . . . . A
blockSeqs : . . . . . . . . T . . . . . T
blockSeqs : . . . . . . . . T . . . . . T
blockSeqs : . . . . . . . . T . . . . . A
blockSeqs : . . . . . . . . A . . . .
blockSeqs : . . . . . . . . T . . . .
blockSeqs : . . . . . . . . T .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
finalCons : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
Alignments
lowQualScore : 1 1 111111111
lowQualScore : 222 555555555 6666666666 0 1 5555555555 1 222 11 3 1 55555 4 5 2 1 3 8 1 666666666 1
lowQualScore : ... ......... .......... . . .......... . ... .. . . ..... . . . . . . . ......... .
lowQualScore : 666 555555555 0000000000 8 4 8888888888 3 333 99 2 8 33333 2 6 4 0 6 0 0 000000000 0
consensus : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
Reference ( family-629 ) : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GCGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTACATTTTGTGT-CANATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTNATGTG---------TTTCATNAATTATATATCAGTGTAACAGTCTTT
gi|41226 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATACTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41227 : TTTTTCTAGGATACCAA---ATACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--GCAGGATAC-AAATGGACTT-----ACTTGTGCAGAAGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATA-TTTTTAATGTG---------TTTCA-AAATTATGTATCAGTGCAACAGTCT
gi|41228 : TTTTTCTAGGATACCTA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACAAAAGGTAT-A---TA--ACGGGATACAAAATGGACTT-----ACTTGTGCAGAGCTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCACCAAATATTTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41229 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTTTGCAGAG-TGCTAC-TTTTGTGT-CATATCTATTTTT-GTTTAGGGAATAAATTGCCCCCAAATA-TTTTTTATGTG---------TTTCATTAATTAAATATCAGTGTAACAGTCTTT
gi|41230 : TTTTTCTAGGATACCAA---AGACATATAACAA---------GTTAC----------CTC-AGTT----------ACCAAAGGTAT-A---AA--GCGGTATAC-TAATAGACTT-----ACTTATGAAGAGGTGCTGC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAATTACCATCAAATA-TTTTTAATGTG---------TTTCACAAATTATATATCAGTGTAACAGTCTTT
gi|41231 : TTTCTAGGATACCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------ACCAAAGGTAT-A---TA--ACGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTTTTTTT-GTTTAGGGAATAAGTTGCAACCAAATA-TTTTTTATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41232 : TTTCTAGGATAGCAA---AGACATATAACAA---------GTAAC----------CTC-AGTT----------A---------------TA--GCAGGATAC-AAATGGACTTTATATACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTATGGAATAAATTGTCACCAAATA-TTTTAAATGTG---------TTTCATAAATTATATATCAGCGTAATAGTCTTT
gi|41233 : TAAGGTACCAA---AGACATGTAACAA---------GTAAC----------AAC-AGTT----------ACTAAAGACAT-AATTTA--GCGGG-------------TT-----ACTTGTGCAGAGGTGC-ATTTTTTGGGC-CATAT
gi|41234 : TAAGTTACCAA---AAACATGTAACTA---------GTAAC----------CAC-AGTT----------ACTAAAGTCAT-G---TA--AC
gi|41235 : AGGTTACCAA---ACATATATAACAA---------ATAAC----------CAC-AGTT----------ACCTAAGACAT-A---TA--GTGGGTTAC-AAATGGACTG-----AATTGTACAGAGATGC-ACATTTTGGGC-CATAT
gi|41236 : GGTACCAA---AGACATATAACAAATTTCTTAAGTAAC----------CTC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATATCTAT
gi|41237 : TACCAA---AGACACATAACAA---------GTAGC----------CTC-GGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGTAGAGGTGC-ACATTTTGatcaatctattgaactaatatttttaa
gi|41238 : TACAAT---AGAAATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACTT-----ACTTGTGCAGAGGTGC-ACATTTTGGGC-CATA--TATGTTCAGTTTAAACCACCATTTGTCCCAAAATA-TTATTTAAGTGGTGTAAGAATTTCATCA---ATATACCA
gi|41239 : TACCAA---AGATATACAGCAA---------GTAACAACAATTAACCAC-AGTT----------ACCAAAGACAT-A---TA--GTGGGTTAC-AAATGGACAT-----ACTTTTGCAGATGTG-TACATTTTGGGT-CATAT
gi|41240 : TACCAA---AAACATATATCAA---------GTAAA----------CAT-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41241 : TACCAA---AAATATGTAGCAA---------GTAAC----------CAC-AGTTAGCCACAGTTACCAAAGACAT-A---TATAGCAGGTTAC-AAACGGACAT-----ACTTGTGCAGAGGTGC-ACATTTT
gi|41242 : TACCAA---AAACATATATTAA---------GCAAC----------CCT-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGACtg
gi|41243 : TACCAA---AGGCATGTAACAA---------ATAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--AC
gi|41244 : TACCAA---ACACATGTAACAA---------GTAAC----------CAC-AGTT----------ACAAAAGGCAT-G---TA--AC
gi|41245 : TACCAA---AAACATGTAACAA---------GTAAC----------CAC-AGTT----------ACAAAAGGCAT-G---T
gi|41246 : TACAAA---AGGCATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCATGA---TA--gac
gi|41247 : TACAAA---AGGCATGTGACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--caagt
gi|41248 : TACTAA---AGTCATGTAACAA---------ATAAC----------CAC-AGTC----------ACCAAAGGCAT-G---TA--AC
gi|41249 : ACCAACTGAGACATATAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGTACTT-----ACTTCTACAGAGGTGC-ACATTTTTTGTACAAA---ATTTTA-GT
gi|41250 : ATCAA---AACCATATAACCA---------GTAAC-----------ACTAGTT----------ACCAAAGGCAT-A---TA--GTGGGTTAC-AAATGGAC
gi|41251 : ACCAA---AGGCATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--
gi|41252 : CCAA---AGACATGTAACAA---------GTAAC----------CAC-AGTT----------ACCAAAGGCAT-G---TA--AC
gi|41253 : ATATAACAA---------GTAAC----------CTT-AGTT----------ACCAAAGGTAT-A---TA--ATGGGATAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-CAAATCTATTTTT-GTTTAGGGAATAAATTGCCATCAAATA-TTTTTAATGTG---------TTTCATTAATTATATATCAGTGTAACAGTCTTT
gi|41254 : A---------GTAAC----------CAC-AATT----------ACCTAAGGCAT-A---CA--GTAGGTTAC-AAATGAACTT-----ACTTGTCCAGAAGTGC-ACATTTTTTGC-CATATCTAT
gi|41255 : T----------ACCAAAGGCAT-A---TA--GTGGGTAAC-AAATGGACTC-----ACTTGTGCAGAGGTGC-ACATTTTGTGC-CATAT
gi|41256 : TAC-AAATGGACTT-----ACTTGTGCAGAGGTGCTAC-TTTTGTGT-AAAATCTATTTTT-GTTTAGGGAATAAATTGCCACTGAATA-TTTTTAATGTG---------GTTCATAAATTATATATCAGTGTAACAGTCTTT