lowQualScore : 111111111 1111111 1111111
lowQualScore : 8 666666 55 888888888 1 22 1 22 44 33333 1 8888888 222 22 3333333 7 33333 222 1 22
lowQualScore : . ...... .. ......... . .. . .. .. ..... . ....... ... .. ....... . ..... ... . ..
lowQualScore : 1 444444 88 666666666 9 66 8 66 44 66666 5 2222222 222 00 5555555 3 88888 777 5 44
consensus : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACA--ATNT--T----C-TGAAA--TGTT-TGATCA--CGGGT-----CATA-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATCACG--AAATAAAA
Reference ( gi|118285 ) : TAATTATATCCATCATTGAATGTATAT------TTGTAATAACA--ATTT--G----C-TGAAA--TGTT-TGATCA--CAGGT-----CATA-ATGACCT--T----TTTCAAA--GT--AC------GTTGCA-----CAAT---GTA-TTATATCACG--AAATAAAA
gi|118286 : TAATTATATCCATCTTTGAATGTATAT------TTGTAATAACA--ATTT--G----C-TGAAA--TGTT-GAATCA--TGGGT-----CATA-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATCAC---AAATAAAA
gi|118287 : TAATTATATCCATCAT-----GTATAT------TTGTAATAACA--ATTA--G----C-TGAAA--TGTT-TGATCA--CGGGT-----CATA-ATGACCT--G----TTTCAAA--GT--AT------GTTGTA-----CAAT---ATA-ATTTATAACG--AAATAAAA
gi|118290 : TGATTATATATGTCATTTAATGTGTAG------TTGTAATAACG--ATAT--T----C-TGAAA--TGTT-TGATCACGCGGGT-----CATG-ACGACCT--T----CTTCAAA--TT--AT------GTTGTA-----CAGT---GTG-CTATATTACG--AAATACAA
gi|118288 : TAATTATATCCGCCATTTAATGTATAT------TTGTAATAACATCATT--------C-TGAAA--TG-T-TGATCT--CGGGT-----CATA-ATGGCCT--A----TTACAAA--TT--AT------ATTGTG-----CAAT---GCA-CAATATTGCG--AAATAAAA
gi|118294 : TAATTAAATCAATCATTTAGTGTATAT------TTGTAATAATA--ATTTTAGTATTC-TGAAA--TGTT-GGATGA--CGAGT-----CTTA-ATAACCT--A----TATCAAA---T--ACT-----GTTGTA-----CAAT---GTA-TCATATTACG--AACTAAA
gi|118291 : TAGCTATAATCGTCATTTAATGTATAT------TTGTAATAATA--ATAT--T----A-TGAAA--TGTT-TGATCA--CGAGT-----CATA-ATGACTT--A----TTTCAAA--TT--AT------GTTGTA-----CAATCAAGGACTTATATC
gi|118298 : TAATTATATCCATCATTGAATGT----------------------------------------A--TATT-TGATCA--TGGGT-----CATA-ATAACCT--A----TTTCAAA--GT--ACATGTATGTTGTA-----CAAT---GTA-TTATATCATG--AAATAAAAtatataa
gi|118297 : TAATTATATCCATCATTGAATTTATAT------TTGTAATAACA--ATTT--G----C-TGTAA--TGTT-TGATCA--CGGGT-----C
gi|118292 : TACTTAAATC-GTCATCTAATGTGTAT------TTGTAATAATA--TTTT--T----C-TGAAG--TGTT-TGATCA--CGGGT-----CATA-ATGACAT--A----TTTCAAA--TT--AT------GTTGTA-----CATT---GTA-ATATAT
gi|118293 : TAAATATATCCGTCATTTAATGTATATAACATTTTGTTATAATAGAATT--------C-TGAAA--TGTC-T-------CAGGTGTCATTATA-ATGACCT--A----TTTCAAA--TT--AT------GTTGTA-----CAAT---GAA-CTATATTACA--AAATAAAA
gi|118289 : TAATCATATCCGTCATTTAATGTATAA------TTATAATAACA--ATAT--T----T-TGAAA--TGTT-TGGTCA--CGGGT-----CATA-ATGACAT--A----TTTCTAA--TT--A
gi|118296 : TAATTATATCCATCATTAAATGTATAT------TTGTAATAGAA--ATAT--T----C-TGAAA--TGTT-TGATCA--CTGGT-----t
gi|118295 : TAATTATATCTACCATTTAGTGATTAT------TTGAAATAACA--CTAT--T----C-TAAAA--TGTG-TGATCA--CGGGT-----C------GACCT--A----TTTCAAATTGT--AT------GGTG-------CAAT---GT---------ACG--AAATAGAA
gi|118299 : TTTTATCCTTCATTTAATATATAT------CTGCATTAATA--ATAT--T----C-TGAAA--TGTT-TGATCA------------CATA-AT---CT--G----TTTCA-----T--AC------TTTGTAGAAATTAAT---AAA-TTACATAACGTTATATAAAAta
gi|118300 : TTATTTTTCTCATTGACTGTATAT------T---AATTATT--ACTA--G----TATGAAA--TGTT-TGGTCA--GA-GT-----CATT-ATGATAT--T----TTTCCAA--TT--AT------GCTGTA-----CAAC---ATA-
gi|118301 : ATCATTTAATGTATAT------TTGTAATAATA--ATAT--T----C-CGAAA--TATT-TGATCA--TGTGT-----CATA-ACGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-CTATATTAAA--AAATAAAAcagtatgta
gi|118302 : ATTAAATGTTTAT------TTGTAATAACA--ATAT--T----C-TGAAA--TGTT-TGATC
gi|118303 : AATGTATAT------TTGTAATAACA--ATAT--T----C-TGAAA--TGTT-TGATCA--CGGGttggg
gi|118304 : ttA--ATTT--T----A-TGAAACTTGCTATGAT-G--CA--T-----CATA-ATGACCT--A----TTTCAAA--GTTTA-------ATTGTA-----CAAT---GTA-TTATATCATG--AAATAAAAatattctgttctgttctgaatttaatgtatagatgtaataacaataat
gi|118305 : T--G----C-TAAAA--TG-----------CA--T-----CATA-ATGATCT--A----TTTCAAA--GT--ACTAT---GTTGTA-----CAAT---GTA-TTATATCACA--AAATGAAA
gi|118306 : aattttatgaaac----C-TGAAA--TGTT-TGATTA--CGGGT-----CATA-ATGACCTACTAGTATTTTAAA--TT--AT------GTTGTA-----CAAT---GTA-CTGTATTACG--AAATTAAA
gi|118308 : atattT-TGATCA--CAGGT-----CAAT-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATCACG--AAATAAAA
gi|118310 : T-----CATA-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATCACG--AAATAAAA
gi|118311 : T-----CATA-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATTACG--AAATAAAA
gi|118309 : T-----CATA-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATCACA--AAATAAAA
gi|118307 : T-----CGTA-ATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TTATATCACA--AAATAAAA
gi|118312 : tgaaacttgttaggatgcaT-----CATA-ATGACCA--A----TTTCAAA--GT--AT------GCTGTA-----CAAT---GTA-TTATATCACG--AAATAAAA
gi|118313 : T-----CATA-ATGACCT--A----TTTCAAA--GT--AT------ATTGTA-----CAAT---GAA-TTATATCACG--AAATAAAA
gi|118314 : T-----TATA-ATGACCT--A----TTTTAAA--GT--AT------GTTGTA-----CAGT---GTA-TTATATCACG--AAATAAAA
gi|118315 : T-----CATA-ATGACCT--T----TTG-AAA--GT--AT------GTTGTA-----CAAT---GTT-TTATATCACA--AAATAAA
gi|118316 : ATATATGACCT--A----TTTCAAA--GT--AT------GTTGTA-----CAAT---GTA-TAATATCACG--AAATAAAA
Alignments
lowQualScore : 1 1 666666 1 555555 66 1 1 333 222 1 444444 6666666 333 1 33333 1 222 1 22
lowQualScore : . . ...... . ...... .. . . ... ... . ...... ....... ... . ..... . ... . ..
lowQualScore : 1 3 111111 6 222222 55 7 7 666 333 4 000000 2222222 888 4 66666 4 555 4 33
consensus : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAATATT------CTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
Reference ( family-627 ) : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAATNTT------CTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118285 : TAATTATATCCATCATTGAATGTATAT------TTGTAATAACAATTTG------CTGAAA--TGTT-TGAT-CA--CAGGTC---ATA-ATGACC------TTTTTCAAA------GTA---CG-TTGCA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118286 : TAATTATATCCATCTTTGAATGTATAT------TTGTAATAACAATTTG------CTGAAA--TGTT-GAAT-CA--TGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCAC---AAATAAAA
gi|118287 : TAATTATATCCATCAT-----GTATAT------TTGTAATAACAATTAG------CTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TGTTTCAAA------GTA---TG-TTGTA-----CA-AT---ATA-ATTTATAACG--AAATAAAA
gi|118288 : TAATTATATCCGCCATTTAATGTATAT------TTGTAATAACATCATT------CTGAAA--TG-T-TGAT-CT--CGGGTC---ATA-ATGGCC------TATTACAAA------TTA---TA-TTGTG-----CA-AT---GCA-CAATATTGCG--AAATAAAA
gi|118289 : TAATCATATCCGTCATTTAATGTATAA------TTATAATAACAATATT------TTGAAA--TGTT-TGGT-CA--CGGGTC---ATA-ATGACA------TATTTCTAA------TTA---T
gi|118290 : TGATTATATATGTCATTTAATGTGTAG------TTGTAATAACGATATT------CTGAAA--TGTT-TGAT-CACGCGGGTC---ATG-ACGACC------TTCTTCAAA------TTA---TG-TTGTA-----CA-GT---GTG-CTATATTACG--AAATACAA
gi|118291 : TAGCTATAATCGTCATTTAATGTATAT------TTGTAATAATAATATT------ATGAAA--TGTT-TGAT-CA--CGAGTC---ATA-ATGACT------TATTTCAAA------TTA---TG-TTGTA-----CA-ATCAAGGACTTATATC
gi|118292 : TACTTAAATC-GTCATCTAATGTGTAT------TTGTAATAATATTTTT------CTGAAG--TGTT-TGAT-CA--CGGGTC---ATA-ATGACA------TATTTCAAA------TTA---TG-TTGTA-----CA-TT---GTA-ATATATtatataa
gi|118293 : TAAATATATCCGTCATTTAATGTATATAACATTTTGTTATAATAGAATT------CTGAAA--TGTC----T-CA--GGTGTCATTATA-ATGACC------TATTTCAAA------TTA---TG-TTGTA-----CA-AT---GAA-CTATATTACA--AAATAAAA
gi|118294 : TAATTAAATCAATCATTTAGTGTATAT------TTGTAATAATAATTTTAGTATTCTGAAA--TGTT-GGAT-GA--CGAGTC---TTA-ATAACC------TATATCAAA-------TAC--TG-TTGTA-----CA-AT---GTA-TCATATTACG--AACTAAA
gi|118295 : TAATTATATCTACCATTTAGTGATTAT------TTGAAATAACACTATT------CTAAAA--TGTG-TGAT-CA--CGGGTC---------GACC------TATTTCAAATT----GTA---TG---GTG-----CA-AT---GT---------ACG--AAATAGAA
gi|118296 : TAATTATATCCATCATTAAATGTATAT------TTGTAATAGAAATATT------CTGAAA--TGTT-TGAT-CA--CTGGTta
gi|118297 : TAATTATATCCATCATTGAATTTATAT------TTGTAATAACAATTTG------CTGTAA--TGTT-TGAT-CA--CGGGTC---
gi|118298 : TAATTATATCCATCATTGAATGTATAT------TTG----------------------------------AT-CA--TGGGTC---ATA-ATAACC------TATTTCAAAGTACATGTA---TG-TTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAA
gi|118299 : TTTTATCCTTCATTTAATATATAT------CTGCATTAATAATATT------CTGAAA--TGTT-TGAT-CA-------C---ATA-AT---C------TGTTTCA---------TA---CT-TTGTAGAAATTA-AT---AAA-TTACATAACGTTATATAAAA
gi|118300 : TTATTTTTCTCATTGACTGTATAT------TAATTATTAC--TAGT------ATGAAA--TGTT-TGGT-CA---GAGTC---ATT-ATGATA------TTTTTCCAA------TTA---TG-CTGTA-----CA-AC---ATA-
gi|118301 : TCATTTAATGTATAT------TTGTAATAATAATATT------CCGAAA--TATT-TGAT-CA--TGTGTC---ATA-ACGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-CTATATTAAA--AAATAAAAcagtatgta
gi|118302 : aATTAAATGTTTAT------TTGTAATAACAATATT------CTGAAA--TGTT-TGAT-CT--TGGG
gi|118303 : TTAATGTATAT------TTGTAATAACAATATT------CTGAAA--TGTT-TGAT-CA--CGGGAT---ATT-CTGTTC------TGTTCTGAA------TT----TA-ATGTA-----TAGAT---GTA-ATA
gi|118304 : AATTTT------ATGAAACTTGCTATGATGCA------TC---ATA-ATGACC------TATTTCAAA------GTT---TAATTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAAacaataat
gi|118305 : AATTTT------ATGAAAC-TGCT-AAA---A--TGCATC---ATA-ATGATC------TATTTCAAA------GTACTATG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATGAAA
gi|118306 : ATATT------CTGAAA--TGTT-TGAT-TA--CGGGTC---ATA-ATGACCTACTAGTATTTTAAA------TTA---TG-TTGTA-----CA-AT---GTA-CTGTATTACG--AAATTAAA
gi|118307 : TGAAACTTGTT-AGG---A--TGCATC---GTA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118308 : T-TGAT-CA--CAGGTC---AAT-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118309 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118310 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118311 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATTACG--AAATAAAA
gi|118312 : TC---ATA-ATGACC------AATTTCAAA------GTA---TG-CTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118313 : TC---ATA-ATGACC------TATTTCAAA------GTA---TA-TTGTA-----CA-AT---GAA-TTATATCACG--AAATAAAA
gi|118314 : TT---ATA-ATGACC------TATTTTAAA------GTA---TG-TTGTA-----CA-GT---GTA-TTATATCACG--AAATAAAA
gi|118315 : TC---ATA-ATGACC------T-TTTGAAA------GTA---TG-TTGTA-----CA-AT---GTT-TTATATCACA--AAATAAA
gi|118316 : ---ATATATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TAATATCACG--AAATAAAA
Alignments
lowQualScore : 1 1 666666 5555555 66 1 1 333 222 1 444444 6666666 333 1 33333 1 222 1 22
lowQualScore : . . ...... ....... .. . . ... ... . ...... ....... ... . ..... . ... . ..
lowQualScore : 1 3 111111 6666666 55 7 7 666 333 4 000000 2222222 888 4 66666 4 555 4 33
consensus : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
Reference ( family-627 ) : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118285 : TAATTATATCCATCATTGAATGTATAT------TTGTAATAACAAT------TTGCTGAAA--TGTT-TGAT-CA--CAGGTC---ATA-ATGACC------TTTTTCAAA------GTA---CG-TTGCA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118286 : TAATTATATCCATCTTTGAATGTATAT------TTGTAATAACAAT------TTGCTGAAA--TGTT-GAAT-CA--TGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCAC---AAATAAAA
gi|118287 : TAATTATATCCATCAT-----GTATAT------TTGTAATAACAAT------TAGCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TGTTTCAAA------GTA---TG-TTGTA-----CA-AT---ATA-ATTTATAACG--AAATAAAA
gi|118288 : TAATTATATCCGCCATTTAATGTATAT------TTGTAATAACATC------ATTCTGAAA--TG-T-TGAT-CT--CGGGTC---ATA-ATGGCC------TATTACAAA------TTA---TA-TTGTG-----CA-AT---GCA-CAATATTGCG--AAATAAAA
gi|118289 : TAATCATATCCGTCATTTAATGTATAA------TTATAATAACAAT------ATTTTGAAA--TGTT-TGGT-CA--CGGGTC---ATA-ATGACA------TATTTCTAA------TTA---T
gi|118290 : TGATTATATATGTCATTTAATGTGTAG------TTGTAATAACGAT------ATTCTGAAA--TGTT-TGAT-CACGCGGGTC---ATG-ACGACC------TTCTTCAAA------TTA---TG-TTGTA-----CA-GT---GTG-CTATATTACG--AAATACAA
gi|118291 : TAGCTATAATCGTCATTTAATGTATAT------TTGTAATAATAAT------ATTATGAAA--TGTT-TGAT-CA--CGAGTC---ATA-ATGACT------TATTTCAAA------TTA---TG-TTGTA-----CA-ATCAAGGACTTATATC
gi|118292 : TACTTAAATC-GTCATCTAATGTGTAT------TTGTAATAATATT------TTTCTGAAG--TGTT-TGAT-CA--CGGGTC---ATA-ATGACA------TATTTCAAA------TTA---TG-TTGTA-----CA-TT---GTA-ATATATtatataa
gi|118293 : TAAATATATCCGTCATTTAATGTATATAACATTTTGTTATAATAGA------ATTCTGAAA--TGTC----T-CA--GGTGTCATTATA-ATGACC------TATTTCAAA------TTA---TG-TTGTA-----CA-AT---GAA-CTATATTACA--AAATAAAA
gi|118294 : TAATTAAATCAATCATTTAGTGTATAT------TTGTAATAATAATTTTAGTATTCTGAAA--TGTT-GGAT-GA--CGAGTC---TTA-ATAACC------TATATCAAA-------TAC--TG-TTGTA-----CA-AT---GTA-TCATATTACG--AACTAAA
gi|118295 : TAATTATATCTACCATTTAGTGATTAT------TTGAAATAACACT------ATTCTAAAA--TGTG-TGAT-CA--CGGGTC---------GACC------TATTTCAAATT----GTA---TG---GTG-----CA-AT---GT---------ACG--AAATAGAA
gi|118296 : TAATTATATCCATCATTAAATGTATAT------TTGTAATAGAAAT------ATTCTGAAA--TGTT-TGAT-CA--CTGGTta
gi|118297 : TAATTATATCCATCATTGAATTTATAT------TTGTAATAACAAT------TTGCTGTAA--TGTT-TGAT-CA--CGGGTC---
gi|118298 : TAATTATATCCATCATTGAATGTATAT------TTG----------------------------------AT-CA--TGGGTC---ATA-ATAACC------TATTTCAAAGTACATGTA---TG-TTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAA
gi|118299 : TTTTATCCTTCATTTAATATATAT------CTGCATTAATAAT------ATTCTGAAA--TGTT-TGAT-CA-------C---ATA-AT---C------TGTTTCA---------TA---CT-TTGTAGAAATTA-AT---AAA-TTACATAACGTTATATAAAA
gi|118300 : TTATTTTTCTCATTGACTGTATAT------TAATTATTAC--T------AGTATGAAA--TGTT-TGGT-CA---GAGTC---ATT-ATGATA------TTTTTCCAA------TTA---TG-CTGTA-----CA-AC---ATA-
gi|118301 : TCATTTAATGTATAT------TTGTAATAATAAT------ATTCCGAAA--TATT-TGAT-CA--TGTGTC---ATA-ACGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-CTATATTAAA--AAATAAAAcagtatgta
gi|118302 : aATTAAATGTTTAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CT--TGGG
gi|118303 : TTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGAT---ATT-CTGTTC------TGTTCTGAA------TT----TA-ATGTA-----TAGAT---GTA-ATA
gi|118304 : AAT------TTTATGAAACTTGCTATGATGCA------TC---ATA-ATGACC------TATTTCAAA------GTT---TAATTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAAacaataat
gi|118305 : AAT------TTTATGAAAC-TGCT-AAA---A--TGCATC---ATA-ATGATC------TATTTCAAA------GTACTATG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATGAAA
gi|118306 : AT------ATTCTGAAA--TGTT-TGAT-TA--CGGGTC---ATA-ATGACCTACTAGTATTTTAAA------TTA---TG-TTGTA-----CA-AT---GTA-CTGTATTACG--AAATTAAA
gi|118307 : TGAAACTTGTT-AGG---A--TGCATC---GTA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118308 : T-TGAT-CA--CAGGTC---AAT-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118309 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118310 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118311 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATTACG--AAATAAAA
gi|118312 : TC---ATA-ATGACC------AATTTCAAA------GTA---TG-CTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118313 : TC---ATA-ATGACC------TATTTCAAA------GTA---TA-TTGTA-----CA-AT---GAA-TTATATCACG--AAATAAAA
gi|118314 : TT---ATA-ATGACC------TATTTTAAA------GTA---TG-TTGTA-----CA-GT---GTA-TTATATCACG--AAATAAAA
gi|118315 : TC---ATA-ATGACC------T-TTTGAAA------GTA---TG-TTGTA-----CA-AT---GTT-TTATATCACA--AAATAAA
gi|118316 : ---ATATATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TAATATCACG--AAATAAAA
Alignments
lowQualScore : 1 1 666666 5555555 66 1 1 333 222 1 444444 6666666 333 1 33333 1 222 1 22
lowQualScore : . . ...... ....... .. . . ... ... . ...... ....... ... . ..... . ... . ..
lowQualScore : 1 3 111111 6666666 55 7 7 666 333 4 000000 2222222 888 4 66666 4 555 4 33
consensus : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
Reference ( family-627 ) : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118285 : TAATTATATCCATCATTGAATGTATAT------TTGTAATAACAAT------TTGCTGAAA--TGTT-TGAT-CA--CAGGTC---ATA-ATGACC------TTTTTCAAA------GTA---CG-TTGCA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118286 : TAATTATATCCATCTTTGAATGTATAT------TTGTAATAACAAT------TTGCTGAAA--TGTT-GAAT-CA--TGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCAC---AAATAAAA
gi|118287 : TAATTATATCCATCAT-----GTATAT------TTGTAATAACAAT------TAGCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TGTTTCAAA------GTA---TG-TTGTA-----CA-AT---ATA-ATTTATAACG--AAATAAAA
gi|118288 : TAATTATATCCGCCATTTAATGTATAT------TTGTAATAACATC------ATTCTGAAA--TG-T-TGAT-CT--CGGGTC---ATA-ATGGCC------TATTACAAA------TTA---TA-TTGTG-----CA-AT---GCA-CAATATTGCG--AAATAAAA
gi|118289 : TAATCATATCCGTCATTTAATGTATAA------TTATAATAACAAT------ATTTTGAAA--TGTT-TGGT-CA--CGGGTC---ATA-ATGACA------TATTTCTAA------TTA---T
gi|118290 : TGATTATATATGTCATTTAATGTGTAG------TTGTAATAACGAT------ATTCTGAAA--TGTT-TGAT-CACGCGGGTC---ATG-ACGACC------TTCTTCAAA------TTA---TG-TTGTA-----CA-GT---GTG-CTATATTACG--AAATACAA
gi|118291 : TAGCTATAATCGTCATTTAATGTATAT------TTGTAATAATAAT------ATTATGAAA--TGTT-TGAT-CA--CGAGTC---ATA-ATGACT------TATTTCAAA------TTA---TG-TTGTA-----CA-ATCAAGGACTTATATC
gi|118292 : TACTTAAATC-GTCATCTAATGTGTAT------TTGTAATAATATT------TTTCTGAAG--TGTT-TGAT-CA--CGGGTC---ATA-ATGACA------TATTTCAAA------TTA---TG-TTGTA-----CA-TT---GTA-ATATATtatataa
gi|118293 : TAAATATATCCGTCATTTAATGTATATAACATTTTGTTATAATAGA------ATTCTGAAA--TGTC----T-CA--GGTGTCATTATA-ATGACC------TATTTCAAA------TTA---TG-TTGTA-----CA-AT---GAA-CTATATTACA--AAATAAAA
gi|118294 : TAATTAAATCAATCATTTAGTGTATAT------TTGTAATAATAATTTTAGTATTCTGAAA--TGTT-GGAT-GA--CGAGTC---TTA-ATAACC------TATATCAAA-------TAC--TG-TTGTA-----CA-AT---GTA-TCATATTACG--AACTAAA
gi|118295 : TAATTATATCTACCATTTAGTGATTAT------TTGAAATAACACT------ATTCTAAAA--TGTG-TGAT-CA--CGGGTC---------GACC------TATTTCAAATT----GTA---TG---GTG-----CA-AT---GT---------ACG--AAATAGAA
gi|118296 : TAATTATATCCATCATTAAATGTATAT------TTGTAATAGAAAT------ATTCTGAAA--TGTT-TGAT-CA--CTGGTta
gi|118297 : TAATTATATCCATCATTGAATTTATAT------TTGTAATAACAAT------TTGCTGTAA--TGTT-TGAT-CA--CGGGTC---
gi|118298 : TAATTATATCCATCATTGAATGTATAT------TTG----------------------------------AT-CA--TGGGTC---ATA-ATAACC------TATTTCAAAGTACATGTA---TG-TTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAA
gi|118299 : TTTTATCCTTCATTTAATATATAT------CTGCATTAATAAT------ATTCTGAAA--TGTT-TGAT-CA-------C---ATA-AT---C------TGTTTCA---------TA---CT-TTGTAGAAATTA-AT---AAA-TTACATAACGTTATATAAAA
gi|118300 : TTATTTTTCTCATTGACTGTATAT------TAATTATTAC--T------AGTATGAAA--TGTT-TGGT-CA---GAGTC---ATT-ATGATA------TTTTTCCAA------TTA---TG-CTGTA-----CA-AC---ATA-
gi|118301 : TCATTTAATGTATAT------TTGTAATAATAAT------ATTCCGAAA--TATT-TGAT-CA--TGTGTC---ATA-ACGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-CTATATTAAA--AAATAAAAcagtatgta
gi|118302 : aATTAAATGTTTAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CT--TGGG
gi|118303 : TTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGAT---ATT-CTGTTC------TGTTCTGAA------TT----TA-ATGTA-----TAGAT---GTA-ATA
gi|118304 : AAT------TTTATGAAACTTGCTATGATGCA------TC---ATA-ATGACC------TATTTCAAA------GTT---TAATTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAAacaataat
gi|118305 : AAT------TTTATGAAAC-TGCT-AAA---A--TGCATC---ATA-ATGATC------TATTTCAAA------GTACTATG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATGAAA
gi|118306 : AT------ATTCTGAAA--TGTT-TGAT-TA--CGGGTC---ATA-ATGACCTACTAGTATTTTAAA------TTA---TG-TTGTA-----CA-AT---GTA-CTGTATTACG--AAATTAAA
gi|118307 : TGAAACTTGTT-AGG---A--TGCATC---GTA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118308 : T-TGAT-CA--CAGGTC---AAT-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118309 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118310 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118311 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATTACG--AAATAAAA
gi|118312 : TC---ATA-ATGACC------AATTTCAAA------GTA---TG-CTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118313 : TC---ATA-ATGACC------TATTTCAAA------GTA---TA-TTGTA-----CA-AT---GAA-TTATATCACG--AAATAAAA
gi|118314 : TT---ATA-ATGACC------TATTTTAAA------GTA---TG-TTGTA-----CA-GT---GTA-TTATATCACG--AAATAAAA
gi|118315 : TC---ATA-ATGACC------T-TTTGAAA------GTA---TG-TTGTA-----CA-AT---GTT-TTATATCACA--AAATAAA
gi|118316 : ---ATATATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TAATATCACG--AAATAAAA
blockSeqs : A G AACATT TTTAGTA CT A G CGC ATT T TACTAG GTACATG CTA A GAAAT G CAA C TT
blockSeqs : A T . T CT . . T . . . TTG C . . . . . .
blockSeqs : G T . T C . . C . . . G . . . . . . .
blockSeqs : G T . A . . . C . . . G . . . . . . .
blockSeqs : G T . A . . . C . . . T . . . . . . .
blockSeqs : G T . A . . . C . . . T . . . . . . .
blockSeqs : G T . A . . . C . . . T . . . . . . .
blockSeqs : G T . T . . . G . . . T . . . . . . .
blockSeqs : A T . A . . . C . . . T . . . . . . .
blockSeqs : A A . A . . . C . . . T . . . . . . .
blockSeqs : A G . A . . . C . . . T . . . . . . .
blockSeqs : A G . T . . . C . . . G . . . . . . .
blockSeqs : A T . A . . . T . . . T . . . . . . .
blockSeqs : T G . A . . . T . . . G . . . . . . .
blockSeqs : C T . A . . . T . . . G . . . . . . .
blockSeqs : A . A . . . C . . . T . . . . . . .
blockSeqs : T . A . . . T . . . G . . . . . . .
blockSeqs : . . T . . . C . . . G . . . . . . .
blockSeqs : T . . . T . . . G . . . . . . .
blockSeqs : A . . . C . . . G . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . G . . . . . . .
blockSeqs : . . . . . . G . . . . . . .
blockSeqs : . . . G . . . . . .
blockSeqs : . . . G . . . . . .
blockSeqs : . . . G . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons :
originalCons : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
finalCons : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
Alignments
lowQualScore : 1 1 666666 5555555 66 1 1 333 222 1 444444 6666666 333 1 33333 1 222 1 22
lowQualScore : . . ...... ....... .. . . ... ... . ...... ....... ... . ..... . ... . ..
lowQualScore : 1 3 111111 6666666 55 7 7 666 333 4 000000 2222222 888 4 66666 4 555 4 33
consensus : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
Reference ( family-627 ) : TAATTATATCCGTCATTTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118285 : TAATTATATCCATCATTGAATGTATAT------TTGTAATAACAAT------TTGCTGAAA--TGTT-TGAT-CA--CAGGTC---ATA-ATGACC------TTTTTCAAA------GTA---CG-TTGCA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118286 : TAATTATATCCATCTTTGAATGTATAT------TTGTAATAACAAT------TTGCTGAAA--TGTT-GAAT-CA--TGGGTC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCAC---AAATAAAA
gi|118287 : TAATTATATCCATCAT-----GTATAT------TTGTAATAACAAT------TAGCTGAAA--TGTT-TGAT-CA--CGGGTC---ATA-ATGACC------TGTTTCAAA------GTA---TG-TTGTA-----CA-AT---ATA-ATTTATAACG--AAATAAAA
gi|118288 : TAATTATATCCGCCATTTAATGTATAT------TTGTAATAACATC------ATTCTGAAA--TG-T-TGAT-CT--CGGGTC---ATA-ATGGCC------TATTACAAA------TTA---TA-TTGTG-----CA-AT---GCA-CAATATTGCG--AAATAAAA
gi|118289 : TAATCATATCCGTCATTTAATGTATAA------TTATAATAACAAT------ATTTTGAAA--TGTT-TGGT-CA--CGGGTC---ATA-ATGACA------TATTTCTAA------TTA---T
gi|118290 : TGATTATATATGTCATTTAATGTGTAG------TTGTAATAACGAT------ATTCTGAAA--TGTT-TGAT-CACGCGGGTC---ATG-ACGACC------TTCTTCAAA------TTA---TG-TTGTA-----CA-GT---GTG-CTATATTACG--AAATACAA
gi|118291 : TAGCTATAATCGTCATTTAATGTATAT------TTGTAATAATAAT------ATTATGAAA--TGTT-TGAT-CA--CGAGTC---ATA-ATGACT------TATTTCAAA------TTA---TG-TTGTA-----CA-ATCAAGGACTTATATC
gi|118292 : TACTTAAATC-GTCATCTAATGTGTAT------TTGTAATAATATT------TTTCTGAAG--TGTT-TGAT-CA--CGGGTC---ATA-ATGACA------TATTTCAAA------TTA---TG-TTGTA-----CA-TT---GTA-ATATATtatataa
gi|118293 : TAAATATATCCGTCATTTAATGTATATAACATTTTGTTATAATAGA------ATTCTGAAA--TGTC----T-CA--GGTGTCATTATA-ATGACC------TATTTCAAA------TTA---TG-TTGTA-----CA-AT---GAA-CTATATTACA--AAATAAAA
gi|118294 : TAATTAAATCAATCATTTAGTGTATAT------TTGTAATAATAATTTTAGTATTCTGAAA--TGTT-GGAT-GA--CGAGTC---TTA-ATAACC------TATATCAAA-------TAC--TG-TTGTA-----CA-AT---GTA-TCATATTACG--AACTAAA
gi|118295 : TAATTATATCTACCATTTAGTGATTAT------TTGAAATAACACT------ATTCTAAAA--TGTG-TGAT-CA--CGGGTC---------GACC------TATTTCAAATT----GTA---TG---GTG-----CA-AT---GT---------ACG--AAATAGAA
gi|118296 : TAATTATATCCATCATTAAATGTATAT------TTGTAATAGAAAT------ATTCTGAAA--TGTT-TGAT-CA--CTGGTta
gi|118297 : TAATTATATCCATCATTGAATTTATAT------TTGTAATAACAAT------TTGCTGTAA--TGTT-TGAT-CA--CGGGTC---
gi|118298 : TAATTATATCCATCATTGAATGTATAT------TTG----------------------------------AT-CA--TGGGTC---ATA-ATAACC------TATTTCAAAGTACATGTA---TG-TTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAA
gi|118299 : TTTTATCCTTCATTTAATATATAT------CTGCATTAATAAT------ATTCTGAAA--TGTT-TGAT-CA-------C---ATA-AT---C------TGTTTCA---------TA---CT-TTGTAGAAATTA-AT---AAA-TTACATAACGTTATATAAAA
gi|118300 : TTATTTTTCTCATTGACTGTATAT------TAATTATTAC--T------AGTATGAAA--TGTT-TGGT-CA---GAGTC---ATT-ATGATA------TTTTTCCAA------TTA---TG-CTGTA-----CA-AC---ATA-
gi|118301 : TCATTTAATGTATAT------TTGTAATAATAAT------ATTCCGAAA--TATT-TGAT-CA--TGTGTC---ATA-ACGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-CTATATTAAA--AAATAAAAcagtatgta
gi|118302 : aATTAAATGTTTAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CT--TGGG
gi|118303 : TTAATGTATAT------TTGTAATAACAAT------ATTCTGAAA--TGTT-TGAT-CA--CGGGAT---ATT-CTGTTC------TGTTCTGAA------TT----TA-ATGTA-----TAGAT---GTA-ATA
gi|118304 : AAT------TTTATGAAACTTGCTATGATGCA------TC---ATA-ATGACC------TATTTCAAA------GTT---TAATTGTA-----CA-AT---GTA-TTATATCATG--AAATAAAAacaataat
gi|118305 : AAT------TTTATGAAAC-TGCT-AAA---A--TGCATC---ATA-ATGATC------TATTTCAAA------GTACTATG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATGAAA
gi|118306 : AT------ATTCTGAAA--TGTT-TGAT-TA--CGGGTC---ATA-ATGACCTACTAGTATTTTAAA------TTA---TG-TTGTA-----CA-AT---GTA-CTGTATTACG--AAATTAAA
gi|118307 : TGAAACTTGTT-AGG---A--TGCATC---GTA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118308 : T-TGAT-CA--CAGGTC---AAT-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118309 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACA--AAATAAAA
gi|118310 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118311 : TC---ATA-ATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TTATATTACG--AAATAAAA
gi|118312 : TC---ATA-ATGACC------AATTTCAAA------GTA---TG-CTGTA-----CA-AT---GTA-TTATATCACG--AAATAAAA
gi|118313 : TC---ATA-ATGACC------TATTTCAAA------GTA---TA-TTGTA-----CA-AT---GAA-TTATATCACG--AAATAAAA
gi|118314 : TT---ATA-ATGACC------TATTTTAAA------GTA---TG-TTGTA-----CA-GT---GTA-TTATATCACG--AAATAAAA
gi|118315 : TC---ATA-ATGACC------T-TTTGAAA------GTA---TG-TTGTA-----CA-AT---GTT-TTATATCACA--AAATAAA
gi|118316 : ---ATATATGACC------TATTTCAAA------GTA---TG-TTGTA-----CA-AT---GTA-TAATATCACG--AAATAAAA