lowQualScore : 666 11 1 11 22 1 1 2222 1 1 222 22 2 7777 1 2 2 333 4 22 4
lowQualScore : ... .. . .. .. . . .... . . ... .. . .... . . . ... . .. .
lowQualScore : 555 88 3 88 44 3 8 7777 3 3 444 00 9 9999 4 9 9 999 0 11 8
consensus : AGAATATTTTTGTGATGA-N-GGC--CA-T--TATCGA-GGA-TCTATCATTT----GA-C-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAGTTCATC--CATGTG
Reference ( gi|161861 ) : AGAATATTTTTGTGATGA-A-GGC--CA-T--TATCGA-AGA-TCTATCATTT----GA-C-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATAAGTTCATC--CGTGTG
gi|161862 : AGTATATTTTTCTGATGA-A-GGC--CA-T--TATCGA-AGA-TCTATCATTT----GA-C-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAGTTCATC--CATGTG
gi|161863 : AGAATATTTATGCGATGA-A-GGC--CA-T--TATTGA-AGA-TCTATTATTT----GA-C-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---TTCCATCATGAGTTCATC--CATGTG
gi|161865 : AGAATATTTTTGTGATGA-A-GGT--CA-T--TATTGA-AAA-TCTGTCATTT----GA-CTTGAGATAAAT---GG--GA-GGAA-AA-A-A-A---ATCCATCATGAGTTCATC--CATGTGt
gi|161864 : AGAATATTTTTGTGATGA-A-GGC--CA-T--TATCGA-AGA-TTTATCATTT----GA-C-TGAGATGAAT---GA--GT-GA-A-AA-A-A-A---ATCAATCATGAATTCATC--TATGTG
gi|161866 : AGAATATTTTTGTGACGA-A-GGC--CA-T--TACCGA-ACA-TTTATCATTC----GT-C-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATACATCATGAGTTTATC--CATGTG
gi|161867 : AAAATATTTTTGTGATTG-G-GGC--CG-T--TATCGA-AGA-TCTTTCATTT----GA-C-TGAGATAAAT---GG--GA-T--A-AA-A-A-A---A--CATCATCAGTTCATC--CGTGTG
gi|161868 : AGGACATTTTTGTGATGA-C-GGC--CA-T--TATCGA-GGG-TCTATCATTT----GT-A-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAGTTTATC--CATGT
gi|161869 : AGAATATTTTTGTGATTA-A-CAC--CA-T--TATCGA-GGA-TTTATCATTTTCAAGA-C---AGATGAAT---GG--GA-G--AGAA-A-A-A---ATCCATCATGAGTTGATC--CG
gi|161870 : AGAATATTTTCGTGATGA-A-GGG--TA-T--CATTGT-GGA-ATTGTCATTT----GA-C-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAGT
gi|161871 : AGGATATTTTTGTGAAGA-C-GGC--TA-T--TATGGA-GGT-TCAAGTGTTA----GAAC-TGAGATGAAT---GG--GA-G--A-AA-A-A-AG--ATCCATCAGGAGTTTATC--CATGTG
gi|161873 : AGAATGTTTTTGTGATAA-----C--CG-T--TATCGA-GGA-TATATCATTT----GA-C-TAAGAT--------------G--G-AA-A-A-A---ATCCATCATGAGTACATC--CATG
gi|161872 : AGAATAATTTTGTGGTGA-A-G-------T--CATTGA-AAA-------ATT-----GA-C-TGAGGTGAAT---GG--GA-G--A-AACA-A-A---ATCCATCATGAGTTCATC--CATGTG
gi|161874 : AGAATATTTTAGCGAAGA-C-GGC--AA-T--TATCGA-GGG-T--ATCGTTT----GA-C-TGAGATGAAT---GA--GA-G----AA-A-A-A---GTCCATCAGAGCCTCATT--CATG
gi|161875 : AGTACATTTTTGTGGTGA-C-TAC--CA-T--AATCAA-GGG-TCTGT-ATTT----G----TGA--TGAATCTGGG--GA-G--AGAA-A-A-A---ATCCATCACAAGTTCATT--CATGT
gi|161876 : AGAA-GTTTTTATGATGG-T-GGC--CA-T--TCTCGAGAGG-T-TACCATTT----GA-A-TGAGATGAAT---GGTAGA-G--A-AA-A-A-AAACATCCAT
gi|161877 : AGGATATTTTTGTAATGC-T-GGC---------------------TATCATTT----GT-C-TGAGATGAAT---TA--GA-G--A-AT-A-A-T---ATTAATCATAAGTTCATC--CAAGTGg
gi|161878 : AGAATATTTTT-TGATGACA-TGC--CA-T--CATTGA-A-A-TATATCATT-----------------------------------AA-A-A-A---ATCCATCATGAGTTGATC--CATGTG
gi|161880 : AAAATATTTTTGTGATGA-C-GGC--CA-T--CATCGA-GTG-TC---CCTTT----GA-C-TGAGAT
gi|161881 : AGGATATTTTTGTGATGA-C-GGC--CA-T--CATCGA-GAG-TC---CCTTT----GA-C-TGAAAT
gi|161879 : AGGGTATTTTCCCGATGG-C-GAC--CA-T--TATTTT-GG--TATATAATTT----GA-C-CGAGGTGAAT---TG--GA-T----AT-T-A-A---ATATATCACGAGTTTATC--CATGTG
gi|161882 : GAATATTTATGTGATGA-A-GGT--CA-T--AATCGA-GGA-TTTATAATTT----GA-C-TGAGATGAAT---GG--GAGG--A-AA-A-A-A---ATCCAGCACAAATTCATC--CATGTG
gi|161883 : GAATATTTTTGTGATGA-A-GGT--TA-T--TATCAA-GGA-TCTATCATTT----CA-C-TGAGATGCAT---Gt
gi|161884 : AATATATTTGTGATGA-A-GGC--CA-T--TATCAA-AGA-TCTATCATTT----AA-A-AAAGATGAAT---GG--GA-GA-A-AA-A-A-A---AAACATCACGAGTTCATC--CATGTG
gi|161886 : AATATTTTTATGATGA-C-GGC--CA-TGGTAT----AGATTCTATTATTT----GG-C-TAAGATCAAT---AG--GA-C--A-AA-T-A-A---ATCCATTATAAGTTTACC--TATGT
gi|161885 : AATATTTTTGCGATGA-T-GGC--AA-T--TATCAA-CG--TATATTAAAT----GA-C-TAAGATGAAT---GG--GA-G--A-AA-A-A-A---ATAAATCACGAGTTATTT--CATGTG
gi|161887 : ATGTTTTTCT-ATGA-ATAAT--CA-T--TATCTT-GGA-TCTATCATTT----GA-C-TGAGATAAAT---GG--GA-G--A-AA-G-ATA---ATCCATCACAGGGTCATC--AATGTG
gi|161888 : ATTTTTGTGATGA-T-GGC--CA-T--TATCGA-GGG-TCTATCATTT----GT-A-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAGTTCATC--CATGT
gi|161889 : ATTTTTGAGATGA-A-GGC--CA-T--TATCAA-GGA-TACAAATTTT----GA-C-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCTGTTATGAGTTCATCTACATGT
gi|161890 : TTTTTGTGATGA-C-GGC--CA-T--TATCGA-GGG-TCTTTCATTT----GT-A-TGAGATG-----------------------------ATCCATCATCAGTTCAGC--CATGTGat
gi|161891 : GA-A-GGCGGCACT--TATCGT-GGA-TCTATTATTT----GA-C-TGGGATGAAT---AG--GAGG--A-AA-A-A-A---AAACATTATGAATTCATC--CATGTG
gi|161892 : TATCATTT----GA-C-TGAGGTGAAT---GG--GA-G--A-AA-A-ATA---ATCCATTATGAGTTCATC--CATGT
Alignments
lowQualScore : 33 1 11 1 11 0 0 2222 1 1 222 11 2 5555 1 2 2 555 1 22
lowQualScore : .. . .. . .. . . .... . . ... .. . .... . . . ... . ..
lowQualScore : 55 3 88 3 88 5 4 7777 2 2 333 99 8 7777 4 8 8 222 4 00
consensus : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
Reference ( family-624 ) : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161861 : AGAATATTTTTGTGATGAA-G-GC--CA-T--TATCGAAGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATAAG-TTCATC--CGTGTG
gi|161862 : AGTATATTTTTCTGATGAA-G-GC--CA-T--TATCGAAGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161863 : AGAATATTTATGCGATGAA-G-GC--CA-T--TATTGAAGATCTATTATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---TTCCATCATGAG-TTCATC--CATGTG
gi|161864 : AGAATATTTTTGTGATGAA-G-GC--CA-T--TATCGAAGATTTATCATTT----G-AC-TGAGATGAAT---GA--GT-GA-A-AA-A-A-A---ATCAATCATGAA-TTCATC--TATGTGt
gi|161865 : AGAATATTTTTGTGATGAA-G-GT--CA-T--TATTGAAAATCTGTCATTT----G-ACTTGAGATAAAT---GG--GA-GGAA-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161866 : AGAATATTTTTGTGACGAA-G-GC--CA-T--TACCGAACATTTATCATTC----G-TC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATACATCATGAG-TTTATC--CATGTG
gi|161867 : AAAATATTTTTGTGATTGG-G-GC--CG-T--TATCGAAGATCTTTCATTT----G-AC-TGAGATAAAT---GG--GA-T--A-AA-A-A-A---A--CATCATCAG-TTCATC--CGTGTG
gi|161868 : AGGACATTTTTGTGATGAC-G-GC--CA-T--TATCGAGGGTCTATCATTT----G-TA-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAG-TTTATC--CATGT
gi|161869 : AGAATATTTTTGTGATTAA-C-AC--CA-T--TATCGAGGATTTATCATTTTCAAG-AC---AGATGAAT---GG--GA-G--AGAA-A-A-A---ATCCATCATGAG-TTGATC--CGT
gi|161870 : AGAATATTTTCGTGATGAA-G-GG--TA-T--CATTGTGGAATTGTCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAG-T
gi|161871 : AGGATATTTTTGTGAAGAC-G-GC--TA-T--TATGGAGGTTCAAGTGTTA----GAAC-TGAGATGAAT---GG--GA-G--A-AA-A-A-AG--ATCCATCAGGAG-TTTATC--CATGTG
gi|161872 : AGAATAATTTTGTGGTGAA-G--------T--CATTGAAAA---A----TT----G-AC-TGAGGTGAAT---GG--GA-G--A-AACA-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161873 : AGAATGTTTTTGTGATAA-----C--CG-T--TATCGAGGATATATCATTT----G-AC-TAAGAT--------------G--G-AA-A-A-A---ATCCATCATGAG-TACATC--CATG
gi|161874 : AGAATATTTTAGCGAAGAC-G-GC--AA-T--TATCGAGGGT--ATCGTTT----G-AC-TGAGATGAAT---GA--GA-G----AA-A-A-A---GTCCATCA-GAGCCTCATT--CATG
gi|161875 : AGTACATTTTTGTGGTGAC-T-AC--CA-T--AATCAAGGGTCTGT-ATTT----G----TGA--TGAATCTGGG--GA-G--AGAA-A-A-A---ATCCATCACAAG-TTCATT--CATGT
gi|161876 : AGAA-GTTTTTATGATGGT-G-GC--CA-T--TCTCGAGAGGTTACCATTT----G-AA-TGAGATGAAT---GGTAGA-G--A-AA-A-A-AAACATCCAT
gi|161877 : AGGATATTTTTGTAATGCT-G-GC-------------------TATCATTT----G-TC-TGAGATGAAT---TA--GA-G--A-AT-A-A-T---ATTAATCATAAG-TTCATC--CAAGTGg
gi|161878 : AGAATATTTTT-TGATGAC-ATGC--CA-T--CATTGAA-ATATATCATT-----------------------------------AA-A-A-A---ATCCATCATGAG-TTGATC--CATGTG
gi|161879 : AGGGTATTTTCCCGATGGC-G-AC--CA-T--TATTTTGG-TATATAATTT----G-AC-CGAGGTGAAT---TG--GA-T--A-TT-A-A-AT--AT--ATCACGAG-TTTATC--CATGTG
gi|161880 : AAAATATTTTTGTGATGAC-G-GC--CA-T--CATCGAGTGTC---CCTTT----G-AC-TGAGAT
gi|161881 : AGGATATTTTTGTGATGAC-G-GC--CA-T--CATCGAGAGTC---CCTTT----G-AC-TGAAAT
gi|161882 : GAATATTTATGTGATGAA-G-GT--CA-T--AATCGAGGATTTATAATTT----G-AC-TGAGATGAAT---GG--GAGG--A-AA-A-A-A---ATCCAGCACAAA-TTCATC--CATGTG
gi|161883 : GAATATTTTTGTGATGAA-G-GT--TA-T--TATCAAGGATCTATCATTT----C-AC-TGAGATGCAT---Gt
gi|161884 : AATATATTTGTGATGAA-G-GC--CA-T--TATCAAAGATCTATCATTT----A-AA-AAAGATGAAT---GG--GA-GA-A-AA-A-A-A---AAACATCACGAG-TTCATC--CATGTG
gi|161885 : AATATTTTTGCGATGAT-G-GC--AA-T--TATCAACG-TATATTAAAT----G-AC-TAAGATGAAT---GG--GA-G--A-AA-A-A-A---ATAAATCACGAG-TTATTT--CATGTG
gi|161886 : AATATTTTTATGATGAC-G-GC--CA-TGGTAT--AGATTCTATTATTT----G-GC-TAAGATCAAT---AG--GA-C--A-AA-T-A-A---ATCCATTATAAG-TTTACC--TATGT
gi|161887 : ATGTTTTTCT-ATGAATA-AT--CA-T--TATCTTGGATCTATCATTT----G-AC-TGAGATAAAT---GG--GA-G--A-AA-G-ATA---ATCCATCACAGG-GTCATC--AATGTG
gi|161888 : ATTTTTGTGATGAT-G-GC--CA-T--TATCGAGGGTCTATCATTT----G-TA-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAG-TTCATC--CATGT
gi|161889 : ATTTTTGAGATGAA-G-GC--CA-T--TATCAAGGATACAAATTTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCTGTTATGAG-TTCATCTACATGT
gi|161890 : TTTTTGTGATGAC-G-GC--CA-T--TATCGAGGGTCTTTCATTT----G-TA-TGAGATG-----------------------------ATCCATCATCAG-TTCAGC--CATGTGat
gi|161891 : GAA-G-GCGGCACT--TATCGTGGATCTATTATTT----G-AC-TGGGATGAAT---AG--GAGG--A-AA-A-A-A---AAACATTATGAA-TTCATC--CATGTG
gi|161892 : TATCATTT----G-AC-TGAGGTGAAT---GG--GA-G--A-AA-A-ATA---ATCCATTATGAG-TTCATC--CATGT
Alignments
lowQualScore : 33 1 11 1 11 0 0 2222 1 1 222 11 2 5555 1 2 2 555 1 22
lowQualScore : .. . .. . .. . . .... . . ... .. . .... . . . ... . ..
lowQualScore : 55 3 88 3 88 5 4 7777 2 2 333 99 8 7777 4 8 8 222 4 00
consensus : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
Reference ( family-624 ) : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161861 : AGAATATTTTTGTGATGAA-G-GC--CA-T--TATCGAAGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATAAG-TTCATC--CGTGTG
gi|161862 : AGTATATTTTTCTGATGAA-G-GC--CA-T--TATCGAAGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161863 : AGAATATTTATGCGATGAA-G-GC--CA-T--TATTGAAGATCTATTATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---TTCCATCATGAG-TTCATC--CATGTG
gi|161864 : AGAATATTTTTGTGATGAA-G-GC--CA-T--TATCGAAGATTTATCATTT----G-AC-TGAGATGAAT---GA--GT-GA-A-AA-A-A-A---ATCAATCATGAA-TTCATC--TATGTGt
gi|161865 : AGAATATTTTTGTGATGAA-G-GT--CA-T--TATTGAAAATCTGTCATTT----G-ACTTGAGATAAAT---GG--GA-GGAA-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161866 : AGAATATTTTTGTGACGAA-G-GC--CA-T--TACCGAACATTTATCATTC----G-TC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATACATCATGAG-TTTATC--CATGTG
gi|161867 : AAAATATTTTTGTGATTGG-G-GC--CG-T--TATCGAAGATCTTTCATTT----G-AC-TGAGATAAAT---GG--GA-T--A-AA-A-A-A---A--CATCATCAG-TTCATC--CGTGTG
gi|161868 : AGGACATTTTTGTGATGAC-G-GC--CA-T--TATCGAGGGTCTATCATTT----G-TA-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAG-TTTATC--CATGT
gi|161869 : AGAATATTTTTGTGATTAA-C-AC--CA-T--TATCGAGGATTTATCATTTTCAAG-AC---AGATGAAT---GG--GA-G--AGAA-A-A-A---ATCCATCATGAG-TTGATC--CGT
gi|161870 : AGAATATTTTCGTGATGAA-G-GG--TA-T--CATTGTGGAATTGTCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAG-T
gi|161871 : AGGATATTTTTGTGAAGAC-G-GC--TA-T--TATGGAGGTTCAAGTGTTA----GAAC-TGAGATGAAT---GG--GA-G--A-AA-A-A-AG--ATCCATCAGGAG-TTTATC--CATGTG
gi|161872 : AGAATAATTTTGTGGTGAA-G--------T--CATTGAAAA---A----TT----G-AC-TGAGGTGAAT---GG--GA-G--A-AACA-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161873 : AGAATGTTTTTGTGATAA-----C--CG-T--TATCGAGGATATATCATTT----G-AC-TAAGAT--------------G--G-AA-A-A-A---ATCCATCATGAG-TACATC--CATG
gi|161874 : AGAATATTTTAGCGAAGAC-G-GC--AA-T--TATCGAGGGT--ATCGTTT----G-AC-TGAGATGAAT---GA--GA-G----AA-A-A-A---GTCCATCA-GAGCCTCATT--CATG
gi|161875 : AGTACATTTTTGTGGTGAC-T-AC--CA-T--AATCAAGGGTCTGT-ATTT----G----TGA--TGAATCTGGG--GA-G--AGAA-A-A-A---ATCCATCACAAG-TTCATT--CATGT
gi|161876 : AGAA-GTTTTTATGATGGT-G-GC--CA-T--TCTCGAGAGGTTACCATTT----G-AA-TGAGATGAAT---GGTAGA-G--A-AA-A-A-AAACATCCAT
gi|161877 : AGGATATTTTTGTAATGCT-G-GC-------------------TATCATTT----G-TC-TGAGATGAAT---TA--GA-G--A-AT-A-A-T---ATTAATCATAAG-TTCATC--CAAGTGg
gi|161878 : AGAATATTTTT-TGATGAC-ATGC--CA-T--CATTGAA-ATATATCATT-----------------------------------AA-A-A-A---ATCCATCATGAG-TTGATC--CATGTG
gi|161879 : AGGGTATTTTCCCGATGGC-G-AC--CA-T--TATTTTGG-TATATAATTT----G-AC-CGAGGTGAAT---TG--GA-T--A-TT-A-A-AT--AT--ATCACGAG-TTTATC--CATGTG
gi|161880 : AAAATATTTTTGTGATGAC-G-GC--CA-T--CATCGAGTGTC---CCTTT----G-AC-TGAGAT
gi|161881 : AGGATATTTTTGTGATGAC-G-GC--CA-T--CATCGAGAGTC---CCTTT----G-AC-TGAAAT
gi|161882 : GAATATTTATGTGATGAA-G-GT--CA-T--AATCGAGGATTTATAATTT----G-AC-TGAGATGAAT---GG--GAGG--A-AA-A-A-A---ATCCAGCACAAA-TTCATC--CATGTG
gi|161883 : GAATATTTTTGTGATGAA-G-GT--TA-T--TATCAAGGATCTATCATTT----C-AC-TGAGATGCAT---Gt
gi|161884 : AATATATTTGTGATGAA-G-GC--CA-T--TATCAAAGATCTATCATTT----A-AA-AAAGATGAAT---GG--GA-GA-A-AA-A-A-A---AAACATCACGAG-TTCATC--CATGTG
gi|161885 : AATATTTTTGCGATGAT-G-GC--AA-T--TATCAACG-TATATTAAAT----G-AC-TAAGATGAAT---GG--GA-G--A-AA-A-A-A---ATAAATCACGAG-TTATTT--CATGTG
gi|161886 : AATATTTTTATGATGAC-G-GC--CA-TGGTAT--AGATTCTATTATTT----G-GC-TAAGATCAAT---AG--GA-C--A-AA-T-A-A---ATCCATTATAAG-TTTACC--TATGT
gi|161887 : ATGTTTTTCT-ATGAATA-AT--CA-T--TATCTTGGATCTATCATTT----G-AC-TGAGATAAAT---GG--GA-G--A-AA-G-ATA---ATCCATCACAGG-GTCATC--AATGTG
gi|161888 : ATTTTTGTGATGAT-G-GC--CA-T--TATCGAGGGTCTATCATTT----G-TA-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAG-TTCATC--CATGT
gi|161889 : ATTTTTGAGATGAA-G-GC--CA-T--TATCAAGGATACAAATTTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCTGTTATGAG-TTCATCTACATGT
gi|161890 : TTTTTGTGATGAC-G-GC--CA-T--TATCGAGGGTCTTTCATTT----G-TA-TGAGATG-----------------------------ATCCATCATCAG-TTCAGC--CATGTGat
gi|161891 : GAA-G-GCGGCACT--TATCGTGGATCTATTATTT----G-AC-TGGGATGAAT---AG--GAGG--A-AA-A-A-A---AAACATTATGAA-TTCATC--CATGTG
gi|161892 : TATCATTT----G-AC-TGAGGTGAAT---GG--GA-G--A-AA-A-ATA---ATCCATTATGAG-TTCATC--CATGT
blockSeqs : AT T GG C GG TCAA A T CTG TA G GAA C T T AAC C TA
blockSeqs : A . . . . . . . . . G AA . T T G . .
blockSeqs : A . . . . . . . . . . AG . . . T . .
blockSeqs : A . . . . . . . . . . AG . . . . . .
blockSeqs : A . . . . . . . . . . AA . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : G . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . G . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : T . . . . . . . . . . A . . . . . .
blockSeqs : T . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
finalCons : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
Alignments
lowQualScore : 33 1 11 1 11 0 0 2222 1 1 222 11 2 5555 1 2 2 555 1 22
lowQualScore : .. . .. . .. . . .... . . ... .. . .... . . . ... . ..
lowQualScore : 55 3 88 3 88 5 4 7777 2 2 333 99 8 7777 4 8 8 222 4 00
consensus : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
Reference ( family-624 ) : AGAATATTTTTGTGATGAN-G-GC--CA-T--TATCGAGGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161861 : AGAATATTTTTGTGATGAA-G-GC--CA-T--TATCGAAGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCCATCATAAG-TTCATC--CGTGTG
gi|161862 : AGTATATTTTTCTGATGAA-G-GC--CA-T--TATCGAAGATCTATCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161863 : AGAATATTTATGCGATGAA-G-GC--CA-T--TATTGAAGATCTATTATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---TTCCATCATGAG-TTCATC--CATGTG
gi|161864 : AGAATATTTTTGTGATGAA-G-GC--CA-T--TATCGAAGATTTATCATTT----G-AC-TGAGATGAAT---GA--GT-GA-A-AA-A-A-A---ATCAATCATGAA-TTCATC--TATGTGt
gi|161865 : AGAATATTTTTGTGATGAA-G-GT--CA-T--TATTGAAAATCTGTCATTT----G-ACTTGAGATAAAT---GG--GA-GGAA-AA-A-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161866 : AGAATATTTTTGTGACGAA-G-GC--CA-T--TACCGAACATTTATCATTC----G-TC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATACATCATGAG-TTTATC--CATGTG
gi|161867 : AAAATATTTTTGTGATTGG-G-GC--CG-T--TATCGAAGATCTTTCATTT----G-AC-TGAGATAAAT---GG--GA-T--A-AA-A-A-A---A--CATCATCAG-TTCATC--CGTGTG
gi|161868 : AGGACATTTTTGTGATGAC-G-GC--CA-T--TATCGAGGGTCTATCATTT----G-TA-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAG-TTTATC--CATGT
gi|161869 : AGAATATTTTTGTGATTAA-C-AC--CA-T--TATCGAGGATTTATCATTTTCAAG-AC---AGATGAAT---GG--GA-G--AGAA-A-A-A---ATCCATCATGAG-TTGATC--CGT
gi|161870 : AGAATATTTTCGTGATGAA-G-GG--TA-T--CATTGTGGAATTGTCATTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-ATA-A---ATCCATCATGAG-T
gi|161871 : AGGATATTTTTGTGAAGAC-G-GC--TA-T--TATGGAGGTTCAAGTGTTA----GAAC-TGAGATGAAT---GG--GA-G--A-AA-A-A-AG--ATCCATCAGGAG-TTTATC--CATGTG
gi|161872 : AGAATAATTTTGTGGTGAA-G--------T--CATTGAAAA---A----TT----G-AC-TGAGGTGAAT---GG--GA-G--A-AACA-A-A---ATCCATCATGAG-TTCATC--CATGTG
gi|161873 : AGAATGTTTTTGTGATAA-----C--CG-T--TATCGAGGATATATCATTT----G-AC-TAAGAT--------------G--G-AA-A-A-A---ATCCATCATGAG-TACATC--CATG
gi|161874 : AGAATATTTTAGCGAAGAC-G-GC--AA-T--TATCGAGGGT--ATCGTTT----G-AC-TGAGATGAAT---GA--GA-G----AA-A-A-A---GTCCATCA-GAGCCTCATT--CATG
gi|161875 : AGTACATTTTTGTGGTGAC-T-AC--CA-T--AATCAAGGGTCTGT-ATTT----G----TGA--TGAATCTGGG--GA-G--AGAA-A-A-A---ATCCATCACAAG-TTCATT--CATGT
gi|161876 : AGAA-GTTTTTATGATGGT-G-GC--CA-T--TCTCGAGAGGTTACCATTT----G-AA-TGAGATGAAT---GGTAGA-G--A-AA-A-A-AAACATCCAT
gi|161877 : AGGATATTTTTGTAATGCT-G-GC-------------------TATCATTT----G-TC-TGAGATGAAT---TA--GA-G--A-AT-A-A-T---ATTAATCATAAG-TTCATC--CAAGTGg
gi|161878 : AGAATATTTTT-TGATGAC-ATGC--CA-T--CATTGAA-ATATATCATT-----------------------------------AA-A-A-A---ATCCATCATGAG-TTGATC--CATGTG
gi|161879 : AGGGTATTTTCCCGATGGC-G-AC--CA-T--TATTTTGG-TATATAATTT----G-AC-CGAGGTGAAT---TG--GA-T--A-TT-A-A-AT--AT--ATCACGAG-TTTATC--CATGTG
gi|161880 : AAAATATTTTTGTGATGAC-G-GC--CA-T--CATCGAGTGTC---CCTTT----G-AC-TGAGAT
gi|161881 : AGGATATTTTTGTGATGAC-G-GC--CA-T--CATCGAGAGTC---CCTTT----G-AC-TGAAAT
gi|161882 : GAATATTTATGTGATGAA-G-GT--CA-T--AATCGAGGATTTATAATTT----G-AC-TGAGATGAAT---GG--GAGG--A-AA-A-A-A---ATCCAGCACAAA-TTCATC--CATGTG
gi|161883 : GAATATTTTTGTGATGAA-G-GT--TA-T--TATCAAGGATCTATCATTT----C-AC-TGAGATGCAT---Gt
gi|161884 : AATATATTTGTGATGAA-G-GC--CA-T--TATCAAAGATCTATCATTT----A-AA-AAAGATGAAT---GG--GA-GA-A-AA-A-A-A---AAACATCACGAG-TTCATC--CATGTG
gi|161885 : AATATTTTTGCGATGAT-G-GC--AA-T--TATCAACG-TATATTAAAT----G-AC-TAAGATGAAT---GG--GA-G--A-AA-A-A-A---ATAAATCACGAG-TTATTT--CATGTG
gi|161886 : AATATTTTTATGATGAC-G-GC--CA-TGGTAT--AGATTCTATTATTT----G-GC-TAAGATCAAT---AG--GA-C--A-AA-T-A-A---ATCCATTATAAG-TTTACC--TATGT
gi|161887 : ATGTTTTTCT-ATGAATA-AT--CA-T--TATCTTGGATCTATCATTT----G-AC-TGAGATAAAT---GG--GA-G--A-AA-G-ATA---ATCCATCACAGG-GTCATC--AATGTG
gi|161888 : ATTTTTGTGATGAT-G-GC--CA-T--TATCGAGGGTCTATCATTT----G-TA-TGAGATGAAT---AG--GA-G----AT-A-A-A---ATCCATCATCAG-TTCATC--CATGT
gi|161889 : ATTTTTGAGATGAA-G-GC--CA-T--TATCAAGGATACAAATTTT----G-AC-TGAGATGAAT---GG--GA-G--A-AA-A-A-A---ATCTGTTATGAG-TTCATCTACATGT
gi|161890 : TTTTTGTGATGAC-G-GC--CA-T--TATCGAGGGTCTTTCATTT----G-TA-TGAGATG-----------------------------ATCCATCATCAG-TTCAGC--CATGTGat
gi|161891 : GAA-G-GCGGCACT--TATCGTGGATCTATTATTT----G-AC-TGGGATGAAT---AG--GAGG--A-AA-A-A-A---AAACATTATGAA-TTCATC--CATGTG
gi|161892 : TATCATTT----G-AC-TGAGGTGAAT---GG--GA-G--A-AA-A-ATA---ATCCATTATGAG-TTCATC--CATGT