lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 222 11 1 11 222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222 111111111 444444444444444 11 33 333 1 2222222 1
lowQualScore : 0 55555555 3333 333 00 999 3 22 1 222 333333333333333333333333333333333333333333333333333333333333333333333333333333333 3333 000000000 3 2 2 000000000000000 66 33 2 1 222 0 3 22 1 7 9999999 0
lowQualScore : . ........ .... ... .. ... . .. . ... ................................................................................. .... ......... . . . ............... .. .. . . ... . . .. . . ....... .
lowQualScore : 6 55555555 0000 999 99 666 0 44 3 333 111111111111111111111111111111111111111111111111111111111111111111111111111111111 4444 000000000 9 2 4 777777777777777 66 00 1 2 777 0 2 22 4 3 0000000 0
consensus : ACAAGATACA-A----G-ATA----CA-A-AT-ATTTTATT-NNGTAAATA-NAGGCCTCCGGCCCAA-A---ATACAACATGTA--ANTAC--ATCAT-----ATATTT-ACA-G------A-T-G--CGTCA---------------CAATA-T---ATTAAA---TAT---------ACAT-TT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAANTATNTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
Reference ( gi|164902 ) : ACAAGATACA-A----G-ATA----CA-AGAT-GTTTTATT-GAGTAAATA-AAGGCCTCCGGCCCAA-A---ATACAACA-GTA--ATTATTGATCAT-T--GATGTTT-ACA-A------AGTTG--TGTTA---------------CAATA-T---ATTAAA---TAT---------ACAT-TT-GAAGTGTC-----------TGAAAACTGG--TACAGTTTATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164901 : ACAAGATACA-A----G-ATA----CA-AGAT-GTTTTATT-GAGTAAATA-AAGGCCTCCGGCCCAA-A---ATACAACA-GTA--ATTATTGATCAT-T--GATGTTTTACA-A------AGTTG--TGTTA---------------CAATA-T---ATTAAA---TAT---------ACAT-TT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164900 : ACAAGATACA-A----G-ATA----CA-AGAT-GTTTTATT-GAGTAAATA-AAGGCCTCCGGCCCAA-A---ATACAACA-GTA--ATTATTGATCAT-T--GATGTTTTACA-A------AGTTG--TGTTA---------------CAATA-T---ATTAAA---TAT---------ACAT-TT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164903 : ACAAATTACA-A----G-ATT----GA-AGAT-GTTTTATT-GAGTAAATA-AAGGCCTCCGGCCGAA-A---ATACAACA-ATA--ATTGTTGATCAT-T--GATGTTTTACA-A------AGTTG--TGTTA---------------CAATA-T---ATTGAA---TAT---------ACAT-TC-GAAGTGTC-----------TGAAAACCGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAATAGCAATTTTTCTAATAGTG------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATTTGTATGTTCTGAATGTCCTATAT
gi|164904 : ACAAGAAACA-A----G-ATA----CA-A--T-GTTTTATT-TTGTAAACA-AAGGCCTTTGGCCCAATATATATATAACA-TTA--TTTAT
gi|164905 : ACAA-ATACA-A------ATA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATACA-----TATCATTATTTA-CA-----AACATTT------------AGTAG--TGTCA---------------AAATA-TGAAATGAAA---TAT---------
gi|164906 : ACAAGACACA-A----G-ATA----CA-AAGT----TTATT-GTG-AAATATAAGGCCTCCGGCCT-A-A---ATACA
gi|164908 : ACAATAGACA-A----T-AGA----CA-A--T-ATTTTATTTGAGTAA-TG-CAGGCCTCCGGCCCAT-A---ATACAA
gi|164907 : ATAAAATACA-A-------TA----CA-A-ATAGTTTTGTT-TCTTAAATA-GAGGCCTCCGGCCCGA-A---ATACA-----T---ATCAATGATTAC-A--AACATTT-GAG-A------A---G--TGTCA---------------AAATA-T---A--AAA---T
gi|164909 : CAATAGACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTAAA---TAT---------
gi|164910 : AAGATACA-A----G-ATA----CA-AAGT----TTATT-GTGCAA-TATGAGGCCTCCGGCCCAA-A---ACACA
gi|164911 : AAGATACA-AA---G-ATA----CA-AAAT----TTATT-GTGCAA-TATAAGGCATCCGGCCCAA-A---ACACA
gi|164912 : AAGATACA-A----C-ATA----CA-AAGT----TTATT-GTG-AAATATAAGGCTTCCAGCCCAA-A---ATA
gi|164913 : AGACATA-G----GCATA-----G-ACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTGAATATTAT---------ACAT-TT-
gi|164914 : AAATACA-AT---G-ACAATGACA-A-AT-GTTTTATT-AAGTAA-TC-TAGGCCTCCGGCCCAT-A---ATACA-----TA--ATTAT
gi|164915 : ATACA-A-------TA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATA-------------TAT--ATCAT------TATTT-ACA-AACATTTAGTAG--TGTCA---------------AAATA-TGAAATGAAA---TATGGCATTCAAACAT-TTAGTAGTGTCAAAATATGAAATGAAATATGGCATACAATTT---ATGTGGAA--ATATTTTA-CAATATTCTT------TTCTATTATAA
gi|164917 : ATACA-A-------TA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATACA-----T----------ATCAT------TATTT-ACA-A------A------CATT----------------TAGTAGT---GTCAAA----AT---------A-----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164916 : ATACA-A-------TA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATACA-----T----------ATCAT------TATTT-ACA-A------A------CATT----------------TAGTAGT---GTCAAA----AT---------A-----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164919 : ATACA-A------ATA----CA-A-AT-ACTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATACA-----T----------ATCAT------TATTT-ACA-A------A------CATT----------------TAGTAGT---GTCAAA----AT---------A-----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAA--ATATTTTA-CAATATTCTT------TTTTATTATAA
gi|164920 : ATACA-ATTACA-ATA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATACA-----T----------ATCAT------TATTT-ACA-A------A------CATT----------------TAGTAGT---GTCAAA----AT---------A-----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164921 : ATACA-A-------TA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCTCCGGCCCAA-A---ATACA-----------TATC-ATCA---------TTT-ACA-A------A------CATT----------------TAGTAGT---GTCAAA----AT---------A-----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164918 : ATACA-A-------TA----CA-A-AT-CCTTTATT-TCGTAAATA-GAGGCCACCGGCCCAA-A---ATACA-----TATCATTATTTA-CA-----AACATTT------------AGTAG--TGTGA---------------AAATA-TGAAATGAAA---TATG--------ACAT-
gi|164922 : ACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCAT-acaattggtgtggaaatattttacaatat
gi|164926 : ACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTAAATATTAT---------ACAT-TT-
gi|164925 : ACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTAAATATTAT---------ACAT-TT-
gi|164924 : ACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTAAATATTAT---------ACAT-TT-
gi|164923 : ACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGGCCTCCGGCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTAAATATTAT---------ACAT-TT-
gi|164927 : ACATA----G-ACA----TAGACAT-ATTTTATT-AAGTAA-TA-TAGACCTCCGTCCCAA-A---ATACAACATGTA--AATAC--ATCA-----------T-ATA-G------A---G--TGACA---------------CAA-------ATTGAATATTAT---------ACAT-TT-
gi|164928 : -A----G-ATA----TAGAAAT-ATTTTATT-TAGTAA-TA-TAGGCCTCCGGCCTAA-A---ATACAACATGTA--AATAC--GTCATATAGAATG----ACACA------AATTGAATATTAAACATTTATACAAGTCAATATT---ATTGAA---TCC---------ACATATT-AAAGTG
gi|164929 : T-ATTTTATT-TAGTAAA-A-TAGGCCTCTGGCCCAA-A---ATACAA
gi|164930 : GGCCAAA-A---ATACAACA--CA--AATGTTAATAAT-T--TATGTTT-GCA-G------AGTTG--TGTTA---------------CAATA-T---ACTAAA---CAC---------ACAT-TT-GAAGTGTT-----------TGGAAA-TGG--TAC--TGTGTAATGTGAAACTACGTCTTATCTATAATTTCAAACAGATTTGTTATATAAA
gi|164931 : TTGTTCTAATAGTTACTGTATATGGATTTCTCGATTTGAAGCAATCGGTAAAAATCTGTATGTTCTGAATGTCCCACAT
Alignments
lowQualScore : 222222 11 2222222222222222 66666666666666666666666666666666666666666 2222 111111111 444444444444444 11 333 222222
lowQualScore : 1 111111 2222 5 44 1 22 00 33 1 3333333333333333 999 55555555555555555555555555555555555555555 4444 111111111 5 2 000000000000000 3 11 1 666 1 1 1 1 333333 8
lowQualScore : . ...... .... . .. . .. .. .. . ................ ... ......................................... .... ......... . . ............... . .. . ... . . . . ...... .
lowQualScore : 8 222222 9999 5 22 3 00 00 66 3 1111111111111111 222 66666666666666666666666666666666666666666 1111 000000000 8 1 777777777777777 8 88 5 444 0 0 4 4 000000 0
consensus : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--ATATTT-ACAAA-----------GCGTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
Reference ( family-622 ) : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----T--GTAANTAC--ATCAT--ATATTT-ACAGA--T--------GCGTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAANTATNTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164900 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-------GTAATTATTGATCATTGATGTTTTACAAAGTT--------GTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164901 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-------GTAATTATTGATCATTGATGTTTTACAAAGTT--------GTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164902 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-------GTAATTATTGATCATTGATGTTT-ACAAAGTT--------GTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTTTATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164903 : ACAAATTACA-A----G-ATT----GAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCGAAAATACAACA-------ATAATTGTTGATCATTGATGTTTTACAAAGTT--------GTGTTACAATA-T---ATTGAA---TAT---------ACATTC-GAAGTGTC-----------TGAAAACCGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAATAGCAATTTTTCTAATAGTG------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATTTGTATGTTCTGAATGTCCTATAT
gi|164904 : ACAAGAAACA-A----G-ATA----CAA--TG-TTTTA-TTTTGTAA-ACA-AA-GGCCTTTGGCCCAATAT---ATA----T--ATA---AC--ATTAT--TTAT
gi|164905 : ACAA-ATACA-A------ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC-----------------AT--ATCAT---TATTT-ACAAA--CATTTAGTAGTGTCAAAATA-TGAAATGAAA---TAT---------
gi|164906 : ACAAGACACA-A----G-ATA----CAA---A-GTTTA-TTGTG-AA-ATATAA-GGCCTCCGGCCT-AAATACA
gi|164907 : ATAAAATACA-A-------TA----CAA-ATAGTTTTG-TTTCTTAA-ATA-GA-GGCCTCCGGCCCGAAATAC-ATA----TCAATGATTAC--A--A---ACATTT-G-AGA--A--------GTGTCAAAATA-T---A--AAA---T
gi|164908 : ACAATAGACA-A----T-AGA----CAA--TA-TTTTATTTGAGT-A-ATG-CA-GGCCTCCGGCCCATAATACAA
gi|164909 : AGACATAGA----C-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTAAA---TAT---------
gi|164910 : caatAAGATACA-A----G-ATA----CAA-AG---TTTA-TTGTGCAATAT--GA-GGCCTCCGGCCCAAAACACA
gi|164911 : AAGATACA-AA---G-ATA----CAA-A-A-TTT-A-TTGTGCAATATA--A-GGCATCCGGCCCAAAACACA
gi|164912 : AAGATACA-A----C-ATA----CAA-AG---TTTA-TTGTG-AA-ATA-TAAGGCTTCCAGCCCAAAATA
gi|164913 : AGACATA-G----GCATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTGAATATTAT---------ACATTT-
gi|164914 : AAATACA-AT---G-ACAATGACAA-ATG-TTTTA-TTAAGTAA--TC-TA-GGCCTCCGGCCCATAATACA
gi|164915 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATA-----------------TAT--ATCAT---TATTT-ACAAA--CATTTAGTAGTGTCAAAATA-TGAAATGAAA---TATGGCATTCAAACATTTAGTAGTGTCAAAATATGAAATGAAATATGGCATACAATTT---ATGTGGAAATATTTtaattat
gi|164916 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC-----------------AT--ATCAT---TATTT-ACAAA------------CATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTATtacaatattcttttctattataa
gi|164917 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC-----------------AT--ATCAT---TATTT-ACAAA------------CATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164918 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCACCGGCCCAAAATAC-----------------AT--ATCAT---TATTT-ACAAA------------CATT-TAGTAGT---GTGAAA----AT---------A----T-GAAA---------------TGAAATATGACATACAA--T-TGGTGTGGAAATATTT
gi|164919 : ATACA-A------ATA----CAA-ATA-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC-----------------AT--ATCAT---TATTT-ACAAA------------CATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATT--TTA-CAATATTCTT------TTTTATTATAAtacaatat
gi|164920 : ATACA-ATTACA-ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC-----------------AT--ATCAT---TATTT-ACAAA------------CATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164921 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC-----------------AT--ATCAT---CATTT-ACAAA------------CATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164922 : -ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--
gi|164923 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTAAATATTAT---------ACATTT-
gi|164924 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTAAATATTAT---------ACATTT-
gi|164925 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTAAATATTAT---------ACATTT-
gi|164926 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTAAATATTAT---------ACATTT-
gi|164927 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GACCTCCGTCCCAAAATACAACA----T--GTAAATAC--ATCAT--AT-------AGA-----------GTGACACAA-------ATTGAATATTAT---------ACATTT-
gi|164928 : acatagac-ATA----GAA-ATA-TTTTA-TTTAGTAA--TA-TA-GGCCTCCGGCCTAAAATACAACA----T--GTAAATAC--GTCAT--ATA------GAA--T--------GA--CACAA-------ATTGAA---TATTAA------ACATTT-
gi|164929 : agatTA-TTTTA-TTTAGTAA-A-A-TA-GGCCTCTGGCCCAAAATACAAatacaagtcaatattattgaatccacatattaaagtg
gi|164930 : GGCCAAAAATACAACACAAAT--GTTAATA---ATT-T--ATGTTT-GCAGAGTT--------GTGTTACAATA-T---ACTAAA---CAC---------ACATTT-GAAGTGTT-----------TGGAA-ATGG--TAC--TGTGTAATGTGAAACTACGTCTTATCTATAATTTCAAACAGATTTGTTATATAAA
gi|164931 : TTGTTCTAATAGTTACTGTATATGGATTTCTCGATTTGAAGCAATCGGTAAAAATCTGTATGTTCTGAATGTCCCACAT
Alignments
lowQualScore : 222222 11 1111111111111111111 555555555555555555555555555555555555555555 2222 111111111 444444444444444 11 333 222222
lowQualScore : 1 111111 2222 5 44 1 22 00 33 1 9999999999999999999 22 000000000000000000000000000000000000000000 4444 111111111 5 2 000000000000000 3 11 1 666 1 1 1 1 333333 8
lowQualScore : . ...... .... . .. . .. .. .. . ................... .. .......................................... .... ......... . . ............... . .. . ... . . . . ...... .
lowQualScore : 8 222222 9999 5 22 3 00 00 66 3 3333333333333333333 33 444444444444444444444444444444444444444444 1111 000000000 8 1 777777777777777 8 88 5 444 0 0 4 4 000000 0
consensus : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--ATATTT-ACAA---------AGC---GTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
Reference ( family-622 ) : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--ATATTT-ACAA---------AGC---GTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164900 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGAT--CATTGATGTTTTACAA---------AGTTGTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164901 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGAT--CATTGATGTTTTACAA---------AGTTGTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164902 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGAT--CATTGATGTTT-ACAA---------AGTTGTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTTTATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164903 : ACAAATTACA-A----G-ATT----GAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCGAAAATACAACA-----ATAATTGTTGAT--CATTGATGTTTTACAA---------AGTTGTGTTACAATA-T---ATTGAA---TAT---------ACATTC-GAAGTGTC-----------TGAAAACCGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAATAGCAATTTTTCTAATAGTG------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATTTGTATGTTCTGAATGTCCTATAT
gi|164904 : ACAAGAAACA-A----G-ATA----CAA--TG-TTTTA-TTTTGTAA-ACA-AA-GGCCTTTGGCCCAATAT---ATA----TATA---AC--AT--TAT--TTAT
gi|164905 : ACAA-ATACA-A------ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAAACATTTAGTAGT---GTCAAAATA-TGAAATGAAA---TAT---------
gi|164906 : ACAAGACACA-A----G-ATA----CAA---A-GTTTA-TTGTG-AA-ATATAA-GGCCTCCGGCCT-AAATACA
gi|164907 : ATAAAATACA-A-------TA----CAA-ATAGTTTTG-TTTCTTAA-ATA-GA-GGCCTCCGGCCCGAAAT---ACA----TATCAATG---ATTACAA--ACATTT-GAGA---------AGT---GTCAAAATA-T---A--AAA---T
gi|164908 : ACAATAGACA-A----T-AGA----CAA--TA-TTTTATTTGAGT-A-ATG-CA-GGCCTCCGGCCCATAATACAA
gi|164909 : AGACATAGA----C-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAA---TAT---------
gi|164910 : caatAAGATACA-A----G-ATA----CAA-AG---TTTA-TTGTGCAATAT--GA-GGCCTCCGGCCCAAAACACA
gi|164911 : AAGATACA-AA---G-ATA----CAA-A-A-TTT-A-TTGTGCAATATA--A-GGCATCCGGCCCAAAACACA
gi|164912 : AAGATACA-A----C-ATA----CAA-AG---TTTA-TTGTG-AA-ATA-TAAGGCTTCCAGCCCAAAATA
gi|164913 : AGACATA-G----GCATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTGAATATTAT---------ACATTT-
gi|164914 : AAATACA-AT---G-ACAATGACAA-ATG-TTTTA-TTAAGTAA--TC-TA-GGCCTCCGGCCCATAATACA
gi|164915 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAAT---------------ATAT--AT--CAT---TATTT-ACAAACATTTAGTAGT---GTCAAAATA-TGAAATGAAA---TATGGCATTCAAACATTTAGTAGTGTCAAAATATGAAATGAAATATGGCATACAATTT---ATGTGGAAATATTTtaattat
gi|164916 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTATtacaatattcttttctattataa
gi|164917 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164918 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCACCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTGAAA----AT---------A----T-GAAA---------------TGAAATATGACATACAA--T-TGGTGTGGAAATATTT
gi|164919 : ATACA-A------ATA----CAA-ATA-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATT--TTA-CAATATTCTT------TTTTATTATAAtacaatat
gi|164920 : ATACA-ATTACA-ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164921 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---CATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164922 : -ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--
gi|164923 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164924 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164925 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164926 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164927 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GACCTCCGTCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTGAATATTAT---------ACATTT-
gi|164928 : acatagac-ATA----GAA-ATA-TTTTA-TTTAGTAA--TA-TA-GGCCTCCGGCCTAAAATACAACA----TGTAAATAC--GT--CAT--AT-------AG---------AAT---GACACAA-------ATTGAA---TATTAA------ACATTT-
gi|164929 : agatTA-TTTTA-TTTAGTAA-A-A-TA-GGCCTCTGGCCCAAAATACAAatacaagtcaatattattgaatccacatattaaagtg
gi|164930 : GGCCAAAAATACAACACAAATGTTAATA---AT--T-T--ATGTTT-GCAG---------AGTTGTGTTACAATA-T---ACTAAA---CAC---------ACATTT-GAAGTGTT-----------TGGAA-ATGG--TAC--TGTGTAATGTGAAACTACGTCTTATCTATAATTTCAAACAGATTTGTTATATAAA
gi|164931 : TTGTTCTAATAGTTACTGTATATGGATTTCTCGATTTGAAGCAATCGGTAAAAATCTGTATGTTCTGAATGTCCCACAT
Alignments
lowQualScore : 222222 11 1111111111111111111 555555555555555555555555555555555555555555 2222 111111111 444444444444444 11 333 222222
lowQualScore : 1 111111 2222 5 44 1 22 00 33 1 9999999999999999999 22 000000000000000000000000000000000000000000 4444 111111111 5 2 000000000000000 3 11 1 666 1 1 1 1 333333 8
lowQualScore : . ...... .... . .. . .. .. .. . ................... .. .......................................... .... ......... . . ............... . .. . ... . . . . ...... .
lowQualScore : 8 222222 9999 5 22 3 00 00 66 3 3333333333333333333 33 444444444444444444444444444444444444444444 1111 000000000 8 1 777777777777777 8 88 5 444 0 0 4 4 000000 0
consensus : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--ATATTT-ACAA---------AGC---GTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
Reference ( family-622 ) : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--ATATTT-ACAA---------AGC---GTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164900 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGAT--CATTGATGTTTTACAA---------AGTTGTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164901 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGAT--CATTGATGTTTTACAA---------AGTTGTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164902 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGAT--CATTGATGTTT-ACAA---------AGTTGTGTTACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAAACTGG--TACAGTTTATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164903 : ACAAATTACA-A----G-ATT----GAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCGAAAATACAACA-----ATAATTGTTGAT--CATTGATGTTTTACAA---------AGTTGTGTTACAATA-T---ATTGAA---TAT---------ACATTC-GAAGTGTC-----------TGAAAACCGG--TACAGTATATAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAATAGCAATTTTTCTAATAGTG------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATTTGTATGTTCTGAATGTCCTATAT
gi|164904 : ACAAGAAACA-A----G-ATA----CAA--TG-TTTTA-TTTTGTAA-ACA-AA-GGCCTTTGGCCCAATAT---ATA----TATA---AC--AT--TAT--TTAT
gi|164905 : ACAA-ATACA-A------ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAAACATTTAGTAGT---GTCAAAATA-TGAAATGAAA---TAT---------
gi|164906 : ACAAGACACA-A----G-ATA----CAA---A-GTTTA-TTGTG-AA-ATATAA-GGCCTCCGGCCT-AAATACA
gi|164907 : ATAAAATACA-A-------TA----CAA-ATAGTTTTG-TTTCTTAA-ATA-GA-GGCCTCCGGCCCGAAAT---ACA----TATCAATG---ATTACAA--ACATTT-GAGA---------AGT---GTCAAAATA-T---A--AAA---T
gi|164908 : ACAATAGACA-A----T-AGA----CAA--TA-TTTTATTTGAGT-A-ATG-CA-GGCCTCCGGCCCATAATACAA
gi|164909 : AGACATAGA----C-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAA---TAT---------
gi|164910 : caatAAGATACA-A----G-ATA----CAA-AG---TTTA-TTGTGCAATAT--GA-GGCCTCCGGCCCAAAACACA
gi|164911 : AAGATACA-AA---G-ATA----CAA-A-A-TTT-A-TTGTGCAATATA--A-GGCATCCGGCCCAAAACACA
gi|164912 : AAGATACA-A----C-ATA----CAA-AG---TTTA-TTGTG-AA-ATA-TAAGGCTTCCAGCCCAAAATA
gi|164913 : AGACATA-G----GCATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTGAATATTAT---------ACATTT-
gi|164914 : AAATACA-AT---G-ACAATGACAA-ATG-TTTTA-TTAAGTAA--TC-TA-GGCCTCCGGCCCATAATACA
gi|164915 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAAT---------------ATAT--AT--CAT---TATTT-ACAAACATTTAGTAGT---GTCAAAATA-TGAAATGAAA---TATGGCATTCAAACATTTAGTAGTGTCAAAATATGAAATGAAATATGGCATACAATTT---ATGTGGAAATATTTtaattat
gi|164916 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTATtacaatattcttttctattataa
gi|164917 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164918 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCACCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTGAAA----AT---------A----T-GAAA---------------TGAAATATGACATACAA--T-TGGTGTGGAAATATTT
gi|164919 : ATACA-A------ATA----CAA-ATA-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATT--TTA-CAATATTCTT------TTTTATTATAAtacaatat
gi|164920 : ATACA-ATTACA-ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---TATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164921 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--AT--CAT---CATTT-ACAA---------A-C---ATT-TAGTAGT---GTCAAA----AT---------A----T-GAAA---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTTTCTATTAT
gi|164922 : -ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--
gi|164923 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164924 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164925 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164926 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTAAATATTAT---------ACATTT-
gi|164927 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GACCTCCGTCCCAAAATACAACA----TGTAAATAC--AT--CAT--AT-------AG---------AGT---GACACAA-------ATTGAATATTAT---------ACATTT-
gi|164928 : acatagac-ATA----GAA-ATA-TTTTA-TTTAGTAA--TA-TA-GGCCTCCGGCCTAAAATACAACA----TGTAAATAC--GT--CAT--AT-------AG---------AAT---GACACAA-------ATTGAA---TATTAA------ACATTT-
gi|164929 : agatTA-TTTTA-TTTAGTAA-A-A-TA-GGCCTCTGGCCCAAAATACAAatacaagtcaatattattgaatccacatattaaagtg
gi|164930 : GGCCAAAAATACAACACAAATGTTAATA---AT--T-T--ATGTTT-GCAG---------AGTTGTGTTACAATA-T---ACTAAA---CAC---------ACATTT-GAAGTGTT-----------TGGAA-ATGG--TAC--TGTGTAATGTGAAACTACGTCTTATCTATAATTTCAAACAGATTTGTTATATAAA
gi|164931 : TTGTTCTAATAGTTACTGTATATGGATTTCTCGATTTGAAGCAATCGGTAAAAATCTGTATGTTCTGAATGTCCCACAT
blockSeqs : G TTACA ATGA G AG T GA TA TA A AACACAAATGTTAATA TA TATTTACAAACATTTAGTAGTGTCAAAATATGAA TATT GGCATTCAA C A TGTCAAAATATGAAA A CA A ATA C G A A ACTGTA T
blockSeqs : . AG . G G . GA TA A . AACAGTAATTATTG . TATTTACAAACATTTAGTAGTGTCAAAATATGAA TATT TAA C . TGTC A CA T ATA C G A A . .
blockSeqs : . GC . G G . GA A A . AACAGTAATTATTG . TGATGTTTTACAAAGTTGTGTTACAATAT TATT . C . TGTC A CA A ATA C G A A . .
blockSeqs : . TG . . G . TT A A . AACAATAATTGTTG . TGATGTTTTACAAAGTTGTGTTACAATAT TATT . C . TGTC T CA T GTA A T T T . .
blockSeqs : . G . . G . TC A A . AACATGTAAATAC . TGATGTTTACAAAGTTGTGTTACAATAT TATT . C . TGTT T CA T TG A T T T
blockSeqs : . G . . C . GT A G . AACATGTAAATAC . ATGTTTGCAGAGTTGTGTTACAATAT TATT . C . . T CA T . A T A A
blockSeqs : . G . . A . TC A G . AACATGTAAATAC . ACATTTGAGAAGTGTCAAAATAT T . C . . T CA T . A T T T
blockSeqs : . G . . A . GA A C . AACATGTAAATAC . TATTTACAAACATTTAGTAGT T . C . . T . T . A T T T
blockSeqs : . G . . A . AA A T . AACATGTAAATAC . TATTTACAAACATTTAGTAGT T . C . . T . T . A T A A
blockSeqs : . T . . A . GT A G . AACATGTAAATAC . TATTTACAAACATTTAGTAGT T . C . . T . G . A T
blockSeqs : . C . . A . GT A T . AACATGTAAATAC . TATTTACAAACATTTAGTAGT T . C . . . . . . C G
blockSeqs : . G . . G . GT A T . AACATGTAAATAC . TATTTACAAACATTTAGTAGT T . C .
blockSeqs : . C . . C . AA A T . AACATGTAAATAC . CATTTACAAACATTTAGTAGT T . . .
blockSeqs : . . . . C . AA A G . ACATATCAATG . ATAGAGTGACACAA T . . .
blockSeqs : . . . . C . TC A G . ATATATAAC . ATAGAGTGACACAA C . . .
blockSeqs : . . . . C . TC A G . ATAT . ATAGAGTGACACAA . . . .
blockSeqs : . . . . A . TC A G . AT . ATAGAGTGACACAA . . . .
blockSeqs : . . . . C . TC A G . AT . ATAGAGTGACACAA . . . .
blockSeqs : . . . . C . TC A G . AT . ATAGAGTGACACAA . .
blockSeqs : . . . . A . TC . G . AT . ATAGAGTGACACAA . .
blockSeqs : . . . . A . TC . T . AT . ATAGAATGACACAA .
blockSeqs : . . A . AA . T . AT .
blockSeqs : . . A . AA . T . AT .
blockSeqs : . . A . AA . T .
blockSeqs : . . A . AA . T .
blockSeqs : . . A . AA . T .
blockSeqs : . . A . AA . T .
blockSeqs : . . . . TA . T .
blockSeqs : . . TA . . .
blockSeqCons : AACATGTAAATAC****** TATTTACAAACATTTAGTAGTGACACAA************** *************** CA ***
originalCons : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--AT--CAT--ATATTT-ACAA---------AGC---GTCACAATA-T---ATTAAA---TAT---------ACATTT-GAAGTGTC-----------TGAAATATGGCATACAATTT-TAATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
finalCons : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACATGTAAATAC------AT--CATTATTTACAAACATTTAGTAGTGACACAA--------------ATTAAA---TAT---------ACATTT-GAAG---------------TGAAATATGGCATACAATTT---ATGTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
Alignments
lowQualScore : 222222 11 2222222222222222222 444444444444444444 222222222 11111111111111 22222 11111111 222222
lowQualScore : 1 111111 2222 5 44 1 22 00 33 1 6666666666666666666 7 666666666666666666 1 9 9 999999999 99999999999999 444 99999 5555 6 555 0 88888888 0 1 1 1 333333 8
lowQualScore : . ...... .... . .. . .. .. .. . ................... . .................. . . . ......... .............. ... ..... .... . ... . ........ . . . . ...... .
lowQualScore : 8 222222 9999 5 22 3 00 00 66 3 1111111111111111111 7 555555555555555555 7 2 0 888888888 77777777777777 777 33333 7777 6 444 6 66666666 2 0 4 4 000000 0
consensus : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCACAA---AT-TAAA---TAT---ACATTTG---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
Reference ( family-622 ) : ACAAGATACA-A----G-ATA----CAA-ATA-TTTTA-TTNNGTAA-ATA-NA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCATTA----T--TTACAAACATTT-AGTAGTGACACAA---AT-TAAA---TAT---ACATTTG---AAGTG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTCTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164900 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGATCATTGATGTT--TTACAAA-------GTTGTGTTACAATATAT-TAAA---TAT---ACATTTG---AAGTGTCTG-AAA----ACTGG--TACA---GTATA----TAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164901 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGATCATTGATGTT--TTACAAA-------GTTGTGTTACAATATAT-TAAA---TAT---ACATTTG---AAGTGTCTG-AAA----ACTGG--TACA---GTATA----TAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164902 : ACAAGATACA-A----G-ATA----CAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCCAAAATACAACA-----GTAATTATTGATCATTGATG-T--TTACAAA-------GTTGTGTTACAATATAT-TAAA---TAT---ACATTTG---AAGTGTCTG-AAA----ACTGG--TACA---GTTTA----TAATGTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAAGAGCAATTTTTCTAATAGTC------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATCTGCATGTTCTGAATGCCCTATAT
gi|164903 : ACAAATTACA-A----G-ATT----GAAGATG-TTTTA-TTGAGTAA-ATA-AA-GGCCTCCGGCCGAAAATACAACA-----ATAATTGTTGATCATTGATGTT--TTACAAA-------GTTGTGTTACAATATAT-TGAA---TAT---ACATTCG---AAGTGTCTGAAAACCGGTACAGTATATA---AT-----------GTGGAACTATGTTTTATCTATAATTTCAAACAGTTTTGTTATAAAAATAGCAATTTTTCTAATAGTG------TCTGGATT-CTCGCTTTGAAGCAATCGATAAAAATTTGTATGTTCTGAATGTCCTATAT
gi|164904 : ACAAGAAACA-A----G-ATA----CAA--TG-TTTTA-TTTTGTAA-ACA-AA-GGCCTTTGGCCCAATAT---ATA----TATAA--------CATTA----T--TTA
gi|164905 : ACAA-ATACA-A------ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATt
gi|164906 : ACAAGACACA-A----G-ATA----CAA---A-GTTTA-TTGTG-AA-ATATAA-GGCCTCCGGCCT-AAATACA
gi|164907 : ATAAAATACA-A-------TA----CAA-ATAGTTTTG-TTTCTTAA-ATA-GA-GGCCTCCGGCCCGAAATAC---------------AT--ATCAATG----A--TTACAAACATTTGAGAAGTGTCA-AA---ATATAAA---
gi|164908 : ACAATAGACA-A----T-AGA----CAA--TA-TTTTATTTGAGT-A-ATG-CA-GGCCTCCGGCCCATAATACAAat
gi|164909 : AGACATAGA----C-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TAAA---TAT---
gi|164910 : caatAAGATACA-A----G-ATA----CAA-AG---TTTA-TTGTGCAATAT--GA-GGCCTCCGGCCCAAAACACA
gi|164911 : AAGATACA-AA---G-ATA----CAA-A-A-TTT-A-TTGTGCAATATA--A-GGCATCCGGCCCAAAACACA
gi|164912 : AAGATACA-A----C-ATA----CAA-AG---TTTA-TTGTG-AA-ATA-TAAGGCTTCCAGCCCAAAATA
gi|164913 : AGACATA-G----GCATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TGAATATTAT---ACATTT
gi|164914 : AAATACA-AT---G-ACAATGACAA-ATG-TTTTA-TTAAGTAA--TC-TA-GGCCTCCGGCCCATAATACA
gi|164915 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAAT---------------ATAT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATGGCATTCAAACATTTAGTAGT---GTCAAAATATtaattat
gi|164915 : CAAAATATGAAA----TG-AAATAT--GGCATT-----------CAAACATTT-AGTAGTGTCA----------AAA---TAT---------G---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTgaaatgaaatatggcatacaatttatgtggaaatattttacaatattcttttctattataa
gi|164916 : atacaatacaaatcctttatttcgtaaatagaggcctccggcccaaaatatatatcattatttacaaacatttagtagtgtATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTCTTTTCTATTATtacaatattcttttctattataa
gi|164917 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTCTTTTCTATTAT
gi|164918 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCACCGGCCCAAAATACA---------------T--ATCATTA----T--TTACAAACATTT-AGTAGTG------------TGAA---AAT---A----TG---AAATG-----AAA----TATGACATACA---ATTGG----T---GTGGAAATATTT
gi|164919 : ATACA-A------ATA----CAA-ATA-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATT--TTA-CAATATTCTT------TTTTATTATAAtacaatat
gi|164920 : ATACA-ATTACA-ATA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--ATCATTA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTCTTTTCTATTAT
gi|164921 : ATACA-A-------TA----CAA-ATC-CTTTA-TTTCGTAA-ATA-GA-GGCCTCCGGCCCAAAATAC---------------AT--ATCATCA----T--TTACAAACATTT-AGTAGTGTCA----------AAA---TA---------TG---AAATG-----AAA----TATGGCATACA---ATTTA----T---GTGGAAATATTTCTTTTCTATTAT
gi|164922 : -ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCAT
gi|164923 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TAAATATTAT---ACATTT
gi|164924 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TAAATATTAT---ACATTT
gi|164925 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TAAATATTAT---ACATTT
gi|164926 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GGCCTCCGGCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TAAATATTAT---ACATTT
gi|164927 : acatagac-ATA----GAC-ATA-TTTTA-TTAAGTAA--TA-TA-GACCTCCGTCCCAAAATACAACA----TGTAAATAC--ATCA-TA------------------T-AG-AGTGACACAA---AT-TGAATATTAT---ACATTT
gi|164928 : acatagac-ATA----GAA-ATA-TTTTA-TTTAGTAA--TA-TA-GGCCTCCGGCCTAAAATACAACA----TGTAAATAC--GTCA-TA------------------T-AG-AATGACACAA---AT-TGAA---TATTAAACATTTATACAAGT------CAA----TAT
gi|164929 : agatTA-TTTTA-TTTAGTAA-A-A-TA-GGCCTCTGGCCCAAAATACAAtattgaatccacatattaaagtg
gi|164930 : GGCCAAAAATACAACACAAATGTTAATA---AT--TTA----TGTTTGCAGA-------GTTGTGTTACAATATAC-TAAA---CAC---ACATTTG---AAGTGTTTG-GAA-----ATGG--TACT---GTGTAA---T---GTGAAACTACGTCTTATCTATAATTTCAAACAGATTTGTTATATAAA
gi|164931 : TTGTTCTAATAGTTACTGTATATGGATTTCTCGATTTGAAGCAATCGGTAAAAATCTGTATGTTCTGAATGTCCCACAT