lowQualScore : 1
lowQualScore : 3 1 1 1 11 1 44444444 7777 4
lowQualScore : . . . . .. . ........ .... .
lowQualScore : 6 3 6 3 88 3 88888888 6666 8
consensus : TTTA-GGCTTT-GGTTT-CAAATGTTACTCAG--C-AGAGT--------AN---CTGAGTATGCCACGCT
Reference ( gi|124127 ) : TTTA-GGCTTT-GGTTT-CAAATATTACTCAG--C-AGAGT--------AT---CTGAGTATGCCAAGCT
gi|124126 : TTTT-GGCTTT-GGTTT-CAAATATTACTCAG--C-AGAGT--------ATCCGCTGAGTATGCCACGCT
gi|124128 : TTTA-GGCTTC-GGTTTTCATATATTACTCAG--C-AGAGT--------AT---CTGAGTATGCCACGCT
gi|124116 : TTTA-GGCTTT-GGTTT-CAAATAATACTCAG--C-AGAGT--------AT---CAGAGTACGTCATGCT
gi|124129 : ttaTTTA-GGCTTTTGGTTT-CCAGTATTACTCAG--C-AGAGA--------AT---CTGAGTATGCCATGC
gi|124125 : TTTT-GGCTTT-GGTTT-CCAATATTACTCAG--C-AGAGT--------TT---CTGACTATGCCACGCT
gi|124111 : tTTTAAGGCTTC-AATTT-CAAATGTTACTCAG--C-AGAGT--------AA---CTGAGTATGCCATGCT
gi|124133 : tttTTAA-GGCTTT-GGTTT-TCATTATTACTCAG--C-AGCGT--------AT---CTGAGTATGTCACGCT
gi|124115 : TTTA-GCCTTT-AATTT-CAAATGTTACTCAG--C-AGAGT--------GA---CTGAGTAAGCCACGCT
gi|124131 : tttTTTA-GGCGTT-GGTTT-CAAATA---CTCAG--C-AGAAT--------AT---CTGAGTTTACCATGCT
gi|124130 : TTTA-GACTTT-GGTTT-TCAGTTTTACTGAG--C-AGAGT--------AA---CTGAGTATGCCACGCT
gi|124132 : TTTA-GGTTTT-GGTT--CAAATATTACTCAG--CAAGAGT--------AC---CTGAGTAT
gi|124114 : TTTA-AACTTT-GATTT-CAAATGTTACTCAG--C-AAAGT--------CA---CTAAGTATGCCACGC
gi|124117 : tttTTTA-GGCTTT-GATTT-TAGATGTTGCTCAA--C-AGTGT--------AA---CTGGGTATGCC
gi|124121 : ttaTTTA-GACTTT-GATTT-CAAATGGCACTCAG--T-AG----------------CTGAATATGCCGCGCT
gi|124120 : tttcTTTA-GGCTTT-G---------TAC--CTCAG--T-AGAGT--------AA---CTGAGTATGCCATGCT
gi|124118 : tttTTTAAGGCTTC-GATTT-CAAATGTTACTCTG--C-AGAG
gi|124112 : tttTA-GACTTT-GATTT-CAAATGTTACTAAG--C-AGAGT--------AA---CTGAGTATGCCATGCTactatgta
gi|124123 : tttcttaaTA-GGCTTT-GATTT-AAAATGTTAATCAG--T-AGAGT--------AA---CTGAATATGCCATGCT
gi|124135 : tttttaA-GGCTTT-GGTTT-TCAATATTACTCAG--C-AGAGT--------AT---CTGAGTATGCAACGCT
gi|124124 : A-GGCGTC-AATTT-CAAATGTTACTCAG--C-AGAGTAACTGAGTAT---CTGAGTATGCCATGCT
gi|124136 : ttttaaA-GGCTTT-GCTTT-CTAGTAATACTCAGAGC-AGAGT--------AA---ACGAGTATGCCACGCT
gi|124137 : -GGATTT-GATTT-CAAATGTTACTCAG--C-AGAGT--------AT---CCGAGTATGCTACGCT
gi|124138 : GCTTT-GATTT-CAAATGTTACTCAG--T-ACAGT--------AA---CTGAGTATACCATGCT
gi|124139 : GCTTT-GGTTG-CAAATGTTACTCAG--T-TGAAT--------AA---CTGAGTATGCCACGCT
gi|124134 : GTTTT-AATTT-CAAACGTTACTCAG--C-AAAGT--------AA---CTGAGTATGCCA
gi|124119 : aatCTTT-A-TTT-CAAATGTTACTCAG--C-A---T--------AT---CTGAGTATGCCACGCT
gi|124141 : ttttttattgcttttatTTT-GGTTT-TAAATATTACTCAG--C-AGAGT--------AT---CTGAGTATGCCA
gi|124142 : TTT-GGTTT-CAAGTATTACTCAG--C-AGAGT--------AT---ATGAGTATGCCACGCTcact
gi|124140 : TTT-AATTT-CAAACGTTACTCAG--T-AGAGT--------AA---CTGAGTATGCCAAGCT
gi|124113 : TTC-GATTT-CAAATGTTACTCAG--C-AGACT--------AA---CTGAGTTTGCCACGCT
gi|124122 : ttttttaagaaTTACTCAG--C-AGAAT--------AA---CTGAATATGCCACGC
Alignments
lowQualScore : 3 1 1 1 222 1 11 1 44444444 3333
lowQualScore : . . . . ... . .. . ........ ....
lowQualScore : 3 2 7 2 222 2 77 2 55555555 3333
consensus : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
Reference ( family-619 ) : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
gi|124111 : TTTAAGGCTTC-AATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124112 : tttTA-GACTTT-GATTT-CAAAT---GTTAC-TAAG--C-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124113 : tttcttaaTTC-GATTT-CAAAT---GTTAC-TCAG--C-A--------GACTA---ACTGAGTTTGCCACGCT
gi|124114 : ttttttaagaaTTTA-AACTTT-GATTT-CAAAT---GTTAC-TCAG--C-A--------AAGTC---ACTAAGTATGCCACGC
gi|124115 : tttTTTA-GCCTTT-AATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTG---ACTGAGTAAGCCACGCT
gi|124116 : tttTTTA-GGCTTT-GGTTT-CAAAT---AATAC-TCAG--C-A--------GAGTA---TCAGAGTACGTCATGCT
gi|124117 : ttaTTTA-GGCTTT-GATTT-TAGAT---GTTGC-TCAA--C-A--------GTGTA---ACTGGGTATGCC
gi|124118 : ttaTTTAAGGCTTC-GATTT-CAAAT---GTTAC-TCTG--C-A--------GAG
gi|124119 : tttCTTT-A-TTT-CAAAT---GTTAC-TCAG--C-A-----------TA---TCTGAGTATGCCACGCTactatgta
gi|124120 : ttttttattgcttttatTTTA-GGCTTT-G---------------TACCTCAG--T-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124121 : tttTTTA-GACTTT-GATTT-CAAAT---GGCAC-TC----------------AGTA---GCTGAATATGCCGCGCT
gi|124122 : tttcTTTA-G-CTTT---TTT----ATTGGGTTAC-TCAG--C-A--------GAATA---ACTGAATATGCCACGC
gi|124123 : tttTA-GGCTTT-GATTT-AAAAT---GTTAA-TCAG--T-A--------GAGTA---ACTGAATATGCCATGCT
gi|124124 : tttttaA-GGCGTC-AATTT-CAAAT---GTTAC-TCAG--C-AGAGTAACTGAGTA---TCTGAGTATGCCATGCT
gi|124125 : ttttaaTTTT-GGCTTT-GGTTT-CCAAT---ATTAC-TCAG--C-A--------GAGTT---TCTGACTATGCCACGCT
gi|124126 : tTTTT-GGCTTT-GGTTT-CAAAT---ATTAC-TCAG--C-A--------GAGTATCCGCTGAGTATGCCACGCT
gi|124127 : TTTA-GGCTTT-GGTTT-CAAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCAAGCT
gi|124128 : TTTA-GGCTTC-GGTTTTCATAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCACGCT
gi|124129 : TTTA-GGCTTTTGGTTT-CCAGT---ATTAC-TCAG--C-A--------GAGAA---TCTGAGTATGCCATGC
gi|124130 : TTTA-GACTTT-GGTTT-TCAGT---TTTAC-TGAG--C-A--------GAGTA---ACTGAGTATGCCACGCT
gi|124131 : TTTA-GGCGTT-GGTTT-CAAAT------AC-TCAG--C-A--------GAATA---TCTGAGTTTACCATGCT
gi|124132 : TTTA-GGTTTT-GGTT--CAAAT---ATTAC-TCAG--CAA--------GAGTA---CCTGAGTAT
gi|124133 : TTAA-GGCTTT-GGTTT-TCATT---ATTAC-TCAG--C-A--------GCGTA---TCTGAGTATGTCACGCT
gi|124134 : GTTTT-AATTT-CAAAC---GTTAC-TCAG--C-A--------AAGTA---ACTGAGTATGCCA
gi|124135 : aatA-GGCTTT-GGTTT-TCAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCAACGCT
gi|124136 : A-GGCTTT-GCTTT-CTAGT---AATAC-TCAGAGC-A--------GAGTA---AACGAGTATGCCACGCT
gi|124137 : -GGATTT-GATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---TCCGAGTATGCTACGCT
gi|124138 : GCTTT-GATTT-CAAAT---GTTAC-TCAG--T-A--------CAGTA---ACTGAGTATACCATGCT
gi|124139 : GCTTT-GGTTG-CAAAT---GTTAC-TCAG--T-T--------GAATA---ACTGAGTATGCCACGCT
gi|124140 : TTT-AATTT-CAAAC---GTTAC-TCAG--T-A--------GAGTA---ACTGAGTATGCCAAGCT
gi|124141 : TTT-GGTTT-TAAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCACACT
gi|124142 : TTT-GGTTT-CAAGT---ATTAC-TCAG--C-A--------GAGTA---TATGAGTATGCCACGCT
Alignments
lowQualScore : 3 1 1 1 222 1 11 1 44444444 3333
lowQualScore : . . . . ... . .. . ........ ....
lowQualScore : 3 2 7 2 222 2 77 2 55555555 3333
consensus : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
Reference ( family-619 ) : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
gi|124111 : TTTAAGGCTTC-AATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124112 : tttTA-GACTTT-GATTT-CAAAT---GTTAC-TAAG--C-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124113 : tttcttaaTTC-GATTT-CAAAT---GTTAC-TCAG--C-A--------GACTA---ACTGAGTTTGCCACGCT
gi|124114 : ttttttaagaaTTTA-AACTTT-GATTT-CAAAT---GTTAC-TCAG--C-A--------AAGTC---ACTAAGTATGCCACGC
gi|124115 : tttTTTA-GCCTTT-AATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTG---ACTGAGTAAGCCACGCT
gi|124116 : tttTTTA-GGCTTT-GGTTT-CAAAT---AATAC-TCAG--C-A--------GAGTA---TCAGAGTACGTCATGCT
gi|124117 : ttaTTTA-GGCTTT-GATTT-TAGAT---GTTGC-TCAA--C-A--------GTGTA---ACTGGGTATGCC
gi|124118 : ttaTTTAAGGCTTC-GATTT-CAAAT---GTTAC-TCTG--C-A--------GAG
gi|124119 : tttCTTT-A-TTT-CAAAT---GTTAC-TCAG--C-A-----------TA---TCTGAGTATGCCACGCTactatgta
gi|124120 : ttttttattgcttttatTTTA-GGCTTT-G---------------TACCTCAG--T-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124121 : tttTTTA-GACTTT-GATTT-CAAAT---GGCAC-TC----------------AGTA---GCTGAATATGCCGCGCT
gi|124122 : tttcTTTA-G-CTTT---TTT----ATTGGGTTAC-TCAG--C-A--------GAATA---ACTGAATATGCCACGC
gi|124123 : tttTA-GGCTTT-GATTT-AAAAT---GTTAA-TCAG--T-A--------GAGTA---ACTGAATATGCCATGCT
gi|124124 : tttttaA-GGCGTC-AATTT-CAAAT---GTTAC-TCAG--C-AGAGTAACTGAGTA---TCTGAGTATGCCATGCT
gi|124125 : ttttaaTTTT-GGCTTT-GGTTT-CCAAT---ATTAC-TCAG--C-A--------GAGTT---TCTGACTATGCCACGCT
gi|124126 : tTTTT-GGCTTT-GGTTT-CAAAT---ATTAC-TCAG--C-A--------GAGTATCCGCTGAGTATGCCACGCT
gi|124127 : TTTA-GGCTTT-GGTTT-CAAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCAAGCT
gi|124128 : TTTA-GGCTTC-GGTTTTCATAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCACGCT
gi|124129 : TTTA-GGCTTTTGGTTT-CCAGT---ATTAC-TCAG--C-A--------GAGAA---TCTGAGTATGCCATGC
gi|124130 : TTTA-GACTTT-GGTTT-TCAGT---TTTAC-TGAG--C-A--------GAGTA---ACTGAGTATGCCACGCT
gi|124131 : TTTA-GGCGTT-GGTTT-CAAAT------AC-TCAG--C-A--------GAATA---TCTGAGTTTACCATGCT
gi|124132 : TTTA-GGTTTT-GGTT--CAAAT---ATTAC-TCAG--CAA--------GAGTA---CCTGAGTAT
gi|124133 : TTAA-GGCTTT-GGTTT-TCATT---ATTAC-TCAG--C-A--------GCGTA---TCTGAGTATGTCACGCT
gi|124134 : GTTTT-AATTT-CAAAC---GTTAC-TCAG--C-A--------AAGTA---ACTGAGTATGCCA
gi|124135 : aatA-GGCTTT-GGTTT-TCAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCAACGCT
gi|124136 : A-GGCTTT-GCTTT-CTAGT---AATAC-TCAGAGC-A--------GAGTA---AACGAGTATGCCACGCT
gi|124137 : -GGATTT-GATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---TCCGAGTATGCTACGCT
gi|124138 : GCTTT-GATTT-CAAAT---GTTAC-TCAG--T-A--------CAGTA---ACTGAGTATACCATGCT
gi|124139 : GCTTT-GGTTG-CAAAT---GTTAC-TCAG--T-T--------GAATA---ACTGAGTATGCCACGCT
gi|124140 : TTT-AATTT-CAAAC---GTTAC-TCAG--T-A--------GAGTA---ACTGAGTATGCCAAGCT
gi|124141 : TTT-GGTTT-TAAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCACACT
gi|124142 : TTT-GGTTT-CAAGT---ATTAC-TCAG--C-A--------GAGTA---TATGAGTATGCCACGCT
blockSeqs : A T A T TGG C AG A GAGTAACT TCCG
blockSeqs : . . A . . . . . . A
blockSeqs : . . A . . . . . . A
blockSeqs : . . A . . . . . . A
blockSeqs : . . G . . . . . . A
blockSeqs : . . A . . . . . . T
blockSeqs : . . A . . . . . . A
blockSeqs : . . A . . . . . . T
blockSeqs : . . A . . . . . . A
blockSeqs : . . A . . . . . . G
blockSeqs : . . G . . . . . . A
blockSeqs : . . G . . . . . . A
blockSeqs : . . G . . . . . . T
blockSeqs : . . G . . . . . . T
blockSeqs : . . G . . . . . . T
blockSeqs : . . G . . . . . . T
blockSeqs : . . G . . . . . . T
blockSeqs : . . G . . . . . . A
blockSeqs : . . G . . . . . . T
blockSeqs : . . A . . . . . . C
blockSeqs : . . G . . . . . . T
blockSeqs : . . C . . . . . . A
blockSeqs : . . A . . . . . . T
blockSeqs : . A . . . . . . A
blockSeqs : . G . . . . . . T
blockSeqs : . A . . . . . . A
blockSeqs : . G . . . . . . A
blockSeqs : . G . . . . . . A
blockSeqs : . . . . . . . . T
blockSeqs : . . . . . . . . T
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
finalCons : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
Alignments
lowQualScore : 3 1 1 1 222 1 11 1 44444444 3333
lowQualScore : . . . . ... . .. . ........ ....
lowQualScore : 3 2 7 2 222 2 77 2 55555555 3333
consensus : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
Reference ( family-619 ) : TTTA-GGCTTT-GGTTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---NCTGAGTATGCCACGCT
gi|124111 : TTTAAGGCTTC-AATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124112 : tttTA-GACTTT-GATTT-CAAAT---GTTAC-TAAG--C-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124113 : tttcttaaTTC-GATTT-CAAAT---GTTAC-TCAG--C-A--------GACTA---ACTGAGTTTGCCACGCT
gi|124114 : ttttttaagaaTTTA-AACTTT-GATTT-CAAAT---GTTAC-TCAG--C-A--------AAGTC---ACTAAGTATGCCACGC
gi|124115 : tttTTTA-GCCTTT-AATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTG---ACTGAGTAAGCCACGCT
gi|124116 : tttTTTA-GGCTTT-GGTTT-CAAAT---AATAC-TCAG--C-A--------GAGTA---TCAGAGTACGTCATGCT
gi|124117 : ttaTTTA-GGCTTT-GATTT-TAGAT---GTTGC-TCAA--C-A--------GTGTA---ACTGGGTATGCC
gi|124118 : ttaTTTAAGGCTTC-GATTT-CAAAT---GTTAC-TCTG--C-A--------GAG
gi|124119 : tttCTTT-A-TTT-CAAAT---GTTAC-TCAG--C-A-----------TA---TCTGAGTATGCCACGCTactatgta
gi|124120 : ttttttattgcttttatTTTA-GGCTTT-G---------------TACCTCAG--T-A--------GAGTA---ACTGAGTATGCCATGCT
gi|124121 : tttTTTA-GACTTT-GATTT-CAAAT---GGCAC-TC----------------AGTA---GCTGAATATGCCGCGCT
gi|124122 : tttcTTTA-G-CTTT---TTT----ATTGGGTTAC-TCAG--C-A--------GAATA---ACTGAATATGCCACGC
gi|124123 : tttTA-GGCTTT-GATTT-AAAAT---GTTAA-TCAG--T-A--------GAGTA---ACTGAATATGCCATGCT
gi|124124 : tttttaA-GGCGTC-AATTT-CAAAT---GTTAC-TCAG--C-AGAGTAACTGAGTA---TCTGAGTATGCCATGCT
gi|124125 : ttttaaTTTT-GGCTTT-GGTTT-CCAAT---ATTAC-TCAG--C-A--------GAGTT---TCTGACTATGCCACGCT
gi|124126 : tTTTT-GGCTTT-GGTTT-CAAAT---ATTAC-TCAG--C-A--------GAGTATCCGCTGAGTATGCCACGCT
gi|124127 : TTTA-GGCTTT-GGTTT-CAAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCAAGCT
gi|124128 : TTTA-GGCTTC-GGTTTTCATAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCACGCT
gi|124129 : TTTA-GGCTTTTGGTTT-CCAGT---ATTAC-TCAG--C-A--------GAGAA---TCTGAGTATGCCATGC
gi|124130 : TTTA-GACTTT-GGTTT-TCAGT---TTTAC-TGAG--C-A--------GAGTA---ACTGAGTATGCCACGCT
gi|124131 : TTTA-GGCGTT-GGTTT-CAAAT------AC-TCAG--C-A--------GAATA---TCTGAGTTTACCATGCT
gi|124132 : TTTA-GGTTTT-GGTT--CAAAT---ATTAC-TCAG--CAA--------GAGTA---CCTGAGTAT
gi|124133 : TTAA-GGCTTT-GGTTT-TCATT---ATTAC-TCAG--C-A--------GCGTA---TCTGAGTATGTCACGCT
gi|124134 : GTTTT-AATTT-CAAAC---GTTAC-TCAG--C-A--------AAGTA---ACTGAGTATGCCA
gi|124135 : aatA-GGCTTT-GGTTT-TCAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCAACGCT
gi|124136 : A-GGCTTT-GCTTT-CTAGT---AATAC-TCAGAGC-A--------GAGTA---AACGAGTATGCCACGCT
gi|124137 : -GGATTT-GATTT-CAAAT---GTTAC-TCAG--C-A--------GAGTA---TCCGAGTATGCTACGCT
gi|124138 : GCTTT-GATTT-CAAAT---GTTAC-TCAG--T-A--------CAGTA---ACTGAGTATACCATGCT
gi|124139 : GCTTT-GGTTG-CAAAT---GTTAC-TCAG--T-T--------GAATA---ACTGAGTATGCCACGCT
gi|124140 : TTT-AATTT-CAAAC---GTTAC-TCAG--T-A--------GAGTA---ACTGAGTATGCCAAGCT
gi|124141 : TTT-GGTTT-TAAAT---ATTAC-TCAG--C-A--------GAGTA---TCTGAGTATGCCACACT
gi|124142 : TTT-GGTTT-CAAGT---ATTAC-TCAG--C-A--------GAGTA---TATGAGTATGCCACGCT