lowQualScore : 1 1 22222222 1 3
lowQualScore : 2 5 7 7777777 22 1 33 3 00000000 9 222 4444444 1 1 3 999 6666 222 5 8888888 1 66666 555 33333 1 3 9 1 1 1 0 1 1 1 1 1 1 6 33 55
lowQualScore : . . . ....... .. . .. . ........ . ... ....... . . . ... .... ... . ....... . ..... ... ..... . . . . . . . . . . . . . . .. ..
lowQualScore : 0 4 9 4444444 00 4 44 1 44444444 2 555 6666666 4 4 5 111 4444 777 5 9999999 5 00000 555 77777 5 0 2 5 5 8 6 4 7 5 5 5 5 1 66 77
consensus : AATATTATGTCAACAATAA------NT--ATATCGA-GACAAA--CATTCAATTAAAGG-------TGTGAAATGATCAATCGGGG---ACTA-------AAACT-GGGATCGAGATATCCGAAATATCGACA--CAGACAATATCGAG-TN-AAAA---GGAAT-N-----TA-TTTATA-----TA-AGCAAAGAAGGGGAAAA-----G-TTGG-GANTGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GA-TATCGAGA-TAAC-GAGTTTCGACTGTA
Reference ( gi|108317 ) : AGTATCATGTCATCAATAA------AT--ATATCGA-GACAAA--CAGTCAATTAAAGG-------AGTTAAATGATCAATCGGGG---ACTA-------AAACT-GGGATCGTGATATCCGGAGTATCGACA--GAGACAATATCGAG-TT-AAAA---GGAGT-T-----TA-TTTATA-----TA-AGCAAAGAAGGGGAAAA-----G-TTGG-GACTGGC-AAAAA-ATATCGACATTACCGGAATATC-GATTCA-A-GC-GA-TATCGAGATTAAT-GAGTTTTGACTGTA
gi|108319 : AGTATTATGTCAACAATAA------AT--ATATCGA-GACAAA--CAATCAATTTATGG-------TGTTAACTGATCAATCGGGG---ACTA-------AAACT-GGGATCGTAATATCCGGAGTATCAACA--GAGACAATATCTAG-TT-AAAA---GGAGT-T-----TA-TTTATA-----TA-AGCAAAGAAGGTGAAAA-----G-TTGG-GACTGGC-AAAAA-ATTTCGACATTACCAGAATATC-GATTCA-A-GC-GA-TATCGAGA-TAAA-GAGTTTCGACTGTA
gi|108320 : AGTATTATGTCAACAAGAA------AT--ATATCGA-GACAAA--CAATCAATTAAAGG-------TGTTAAATGATCAATCGGGG---ACTA-------AAACT-GGGATCGTGATATCCGGAGTATCGACA--GAGAAAATATATAG-TT-AAAA---GGAAT-T-----TA-TTTATA-----TA-AGCAAAGAAGGGGAAAA-----G-TTGG-AACTTGC-AAAAA-ATATCGACATTACCAGAATATC-GATTCA-A--C-AA-TATCAAGA-TAAC-GAGTTTCGACTGTA
gi|108324 : AATATTATGTCAACAATAA------AT--ATATCAA-GACAAA--CATTTCATTAAAGG-------TGTTAAATGATCAATCGGGG---ACTA-------AAACT-GGGATCGAGATTTCCGGAATATCGACA--CAGACAATATCGAG-AT-AA---------T-T-----AA-TTTTTC-----TA-AGCAAATAATGGGAAAC-----G-TTGA-GACTGGC-AAAAA-ATATCGA-ATAACCGGAATATC-GATCCG-A-GC-GA-TATCGAGA-TAAC-GAGTTTCGACTGTA
gi|108310 : AATATTATGTCAACAATAA------AT--ATATCGA-GACAAA--CATTCAGTTAAAGG-------TGTAAAATGATCAACTGGGA---ACTA-------AAACT-GGGATCGAGATATCCGAAATATCGACA--CAGACAATATCGAG-TA-AAAA---GGAAT-A-----TA-TTTAGA-----GA-CACAAAGAAGGGGAAAA-----G-TTGG-GGATGGC-AACAA-GTATCGACACTACCAAAATATC-GACCTA-A-GC-GA-TATCGAAA-TAAC-GAGTTTCAACTATA
gi|108327 : AGTATTATGTCAACAATAA------AT--ATATCGA-GACAAA--CAATCAATTGAAGG-------TGTTAAATGCTCAATCGGCG---ACTG-------AAACT-GGGATCGTGATACCCGGAGTATCGACA--GAGACAATATCGAG-TT-AAAA---GTAGT-T-----TA-TTTATA-----TA-AGCAATGAAGGGGAAAA-----G-TTGG-GACTGGC-AAAAC-ATATC-ACATAAC--GAGTTTC-GACT
gi|108321 : AATATTATTTCAACAATTA------TC--ATATCGA-GACAAA--CATTCAATTAAAGG-------TGTGGAAGGATCAATCAGGG---ACTA-------AAACT-GGGATCGAGATATCTGGAATATCGATA--CAGATAATATTCAGATA-AAAA---GGCAT-T-----TA-TTTATA-----TA-TGCAAAGAAGGGGAAAA-----G-TTGG-GACTGGC--AAAA-ATATCGACATTACCCGAATATC-TACTCA-A-GC-GA-TGTCGATATT-AC-GAGTTTCGGCTGTA
gi|108311 : AATATTATGTCAACAATAG------TT--ATATCGA-GATAAA--CATTCAAGTAAATG-------TGTGAAATGATCAATTGGGA---ACTA-------AAACT-GGGATCGAGATATCCGAAATATCGACA--CAGACAATATAGAG-TA-AATA---GGAAT-A-----TA-TTTACA-----TA-CACAAAGAATGGGAAAA-----G-TTGG-GGATGAC-AAAAA-ATATCAACACTTCAGGAATATC-GACTCA-A-GC-GA-TATCGAGA-TAAG-GAGTTTCAACTGTA
gi|108313 : AATATTATGTCGACAATAA------TT--ATATCAT-GACAAA--CATTCAATCAAAGA-------CGTGAAATGATCAGTTGGGA---AGTA-------AAACT-GGGATCAAGATATCCGAAATATTGACA--CAGAAAATATCGAG-TT-AAAA---GGAAT-A-----TA-TTTACA-----TA-CACAAAGAAGGGGAAAA-----G-TTGG-GGATGGC-AAAAT-AT-TCGCCACTACCGGAATATC-GACTCA-A-GC-GA-TACCGAGA-TAAT-GAGTTTCAATTGTA
gi|108326 : AATATTATGTCAACAATAA------AT--ATA----------A--CATTCAATTAAAGG-------TGTGAAATGATCAATCGGGGGGGATTT-------AA-CT-GGGATCGAGATATCTGGAATATTGACACTGGGA-----TCAAG-AT-AAAA---GGGAT-C-----TA-TTTATA-----TA-AGCAAAGAAAGGCAAAA-----G-TTGG-GACTGGC-AAAAA-ATATCGACATTACCTGAATAAC-GGCTCA-A-GC-GA-TATCGAGA-TAAT-GAGTTTCGACTGTA
gi|108314 : AATATTATGTCAACAATAA------TT--TTATCGA-GACAAA--CATTCAATTACAGG-------TGTGAAATGATCAATTGGGA---ACTA-------AAACT-TG-ATCGAGATATCTGAAATATCGACA--CA--CAATATCGAG-GA-AAAAAAAGGAAT-A-----TA-TTTATAATATATA-CACAAAGAAGGGGAAAA-----G-TTGG-GGATTGC-AAAAA-ATATCGATTCTACCGGAATATT-GACTCA-A-GC-GA-TATCGAGA-TAAC-GAGTTTCAACTGTA
gi|108318 : AATATTAAGTCAACAATAATTACATGT--ATATTGA-GGCAAA--CATTCAATTAAAGG-------TATGAAATGATCAATCGGGA---ACTA-------AAACT-GGGATCGAGAGATTCGAAATATTGACA--CAGACAATATCCAG-TA-AAAA---GGAAT-A-----TA-TTTATA-----TA-CACATAGAAGGGGAATA-----GTTTGG-GA-TGGC-AAAAA-ATATTGACAAAACCGGAATATT-GACTCG-A-GC-GA-TATTGAGA-TAAC-AAGTGTCAACTGTA
gi|108331 : AGTATTAAACCGACAATAA------AT--ATATCGA-GACAAA--CAATCAA--------------------ATTATCAATATGGG---ACTA-------AAACT-GGGATCGTTATATCCGGAGTATCGACA--GAGACAATATCGAG-TTGAAAA---GGTAT-T-----TA-TTTATA-----TA-AGAAAAGAAGGGGAAAA-----G-TTGG-AACTTGC-AAATA-ATA-----------------TC-GATTCA-A-GC-GA-TATCGAGAT--ATCGAGTTTCCACTGTA
gi|108316 : AATATTATGTCAACAACTA------TC--ATATTGG-GACAAA--CATTCAATTAAAGG-------TGTGAAATGATCAATCAGTA---ACTACCCGTTTAAACT-GGGATCGAGATATCCAAAATACCGACA--CAGACAATATTGAG-TA-AAAA---TAAATATACATGTA-TTTATA-----TA-CATAAAGAAGAGGAAAA-----G-TTGG-GGATGGCAAAAAA-ATATTGACACTACTAGAATATT-GACTCA-A-GT-GA-TATCGAGA-TAAT-GAGATTCTACTGTA
gi|108330 : AGTATTATGGCAACAATAA------AT--TTATGGA-GACAAA--CAATCAATTAAAGG-------TGTTAAATGATCAATCGGGG---ACTT-------AAACT-GCGATCGTGATATCTGAAGTAGCGACA--GAGACAATATTGAG-TT-AAAA---GGAAT-T-----TA-TTTATA-----TA-ACCAAAGAAGGGGAAAA-----T-TTGG-GA
gi|108322 : AATATTATGTCAACAATTA------A---ATATCGA-GACAAA--CATTCAATCAAAGG-------TGTAAAATGATCAATCGGGA---ACTA-------AAACA-GGGATCCAGATATCCGAACTATCGACA--CAGACAATATCGAG------------------------------CA-----CA-A----AGAAGGGGAAAA-----G-TTGATGA-TGGC-AAAAAGATATCGACACTACCGGAATATC-GACTTATATGC-GA-TATCGAGA-TAAC-GAGTTTCAACTGTA
gi|108323 : AATATTAAGTCAACAATAA------TC--ATATTGA-GACAAA--CATTCAATCAAAGGTGAAATCAATGAAACGATCAATCAGGA---ACTA-------AAACT-GAGATC--------CGAAATATCGACA--CAGACAATATCGAG-TC-AAAA---AGAAA-T-----AAATTTACA-----TA-AACAAAGAAGGGGAAA------G-TT--------------AA-ATATCGACACTACCAGAATATT-GACTCA-A-GC-GA-TATTGAGA-TAAC-GAGTTTCAACTGTA
gi|108329 : AATATTATGTCAACAATTA------TT--ATATCGA-GACAAA--CATTCACATAAAGG-------TGT---------------GA---ACTA-------AAACTCGAGATCGAGATATC---------GACT--CAGACAATATCGAG-TA-AAAG---GGAAT-A-----TA-TTTACA-----TA-GACAGAGAAGAGGAAAA-----A-ATGA-GGATGGC-AA--------------------AATATT-GATTAA-T-GC-GA-TACCGAGA-CAAT-GAGTTTCAACTGTA
gi|108334 : AATATCATGTCA--ACTGC------TTTGATATCAA-GACAAA--CATTCATTCTAAGG-------CGTAAAATGATCAATTGGGA---ACTA-------CAATT-GGGATCGATATATCCGAAATATCAACA--
gi|108332 : AATATTTTGTCAACAATTT------TC--GTATCGA-GACAAT--CATTCAATTAAAGG-------TGTGAAATTATCAATCGGGA---ACTA-------AAATT-GAAATAGAGATATCCAAATTTTCGATA--CAAAC
gi|108333 : AATATTATGTCAACAATTA------TT--ATATTGA-GATAAAA-CATTCAAATGAAAA-------TGTGATTTGATCAGTCGAGA---ACTA-------AAGCA-GGGATCGAGATAGCGAAAATATCGACA--AA
gi|108335 : TATTATGTCAACAATAA------AT--ATATCGAAGACAAA--CATTCAATTAAAG----------TTG--TGA-------AGG---ACTA-------AAACT-GGGATCGAGATATCTGGAATATCGACG--CAGACAATATCGAG-AT-AAAA---GGAAT-T-----TA-TTTATA-----TA-AGCA---AAGGGGAAAA-----G-TT-G-GACTGGC-AAAAA-ATATCAACATTACTGGAA-ATTGGACTCA-A-GG-GT-TACCGAGA-TAAC-GAGTTTCAACTGTA
gi|108336 : aTATTATGTCAACAGTCC------AT--ATAACAA-GACAAAAACAATCAATTAAAGG-------TGATAAATGATCAATCGGAG---ACTA-------AATCT-AAGATCGTGATATCGGGAGAATAGACA--GAGACAATATCGAG-TT-AAAA---GGAAT-T-----TA-TTTATA-----TA-AGCAAAGAAGAGGAAAA-----G-TTGG-G---------AAA-ATATCAACATTACCAGAATATT-GTTTTA-A-ACTGA-TA
gi|108315 : TTATGTCAAGAGTTA------AT--AAATCGA-GACAAA--CATTCATTTAAAGG-------TGTGAAATGATCAATTGGGA---ACTA-------AAACT-GGGATTGAGATATCCGAAATATCGACA--CAGACAGTATCGAG-TT-TAAA---GGAAT-A-----TA-TTTACA-----TA---CACAGAAGGGAAAAA-----G-TTGGTGA-TCGC-AAAAA-ATATTGATACTACCGTGATATC-GATTCC-A-GC-AA-TATTGAGA-TAAC-GAGTTTCGACTTTA
gi|108312 : aattTTATGTCCACAATAA------TT--ATATCGA-GACAAA--TATTCAATTAAAGG-------TGTGAAATGATCAATTGGAA---ATTA-------AAACT-GGGATCGAGATATCCAAAATATCGACA--TGGACAATATCAAG-TA-AAAA---GGAAT-A-----TA-TTTACA-----TACAAAAAAAAAAGGGGAAA-----G-TTGG-GAATGGC-ATAAA-CTATCGACAATACCAGAATATC-TACTCG-A-GC-GA-TATCGAGA-TAAT-GCATTTCAAGTGTA
gi|108328 : aattTTATGTCAACAATAA------AT--ATATCAA-GACCAA--CATTCAATT--------------------GATCAATCGGGG---ACTA-------AAACT-AGGATCAAGATATCAGGAATATCGACA--TTGACAACATCGAG-AT-TAAA---GGAAT-T-----TA-TTTATA-----TA-AGCAAAGAAGGGGGAAA-----G-TTGG-GACTGGC-AAGAA-ATATCGACATTACCGTAATATC-GACT
gi|108338 : aattCAATAA------TT--ATATCGA-GACAAA--CATTCAATTAAAGG-------TGTGAAATGATCAATCGGGA---ACTA-------AAACT-GGGATTGAGATATCCAAAATATCGATA--AAGACAATATCCAG-TA-AAAA---GGAAT-A-----AA-TTTACA-----TA-CACAAAGA
gi|108337 : a------AT--ATATCAA-GACAAA--CATTCAATTAAAGG-------TGTTAAATGATCAATTGGGG---ACTA-------AAACT-GGAATCAAGATATCCAGAATATCGACA--CAGACAATATCGAG-AT-AAAA---GGAAT-T-----TG--TTA-A-----TA-AGTAAAGAAGGGGAGAA-----G-ATTG-GACTGGC-AAAAA-ATATCAACATTACCAGAATATC-GACTCA-A-GT-GA-TATCAAGA-TAAC-GAGTTTCGACTGTA
gi|108325 : aacaaactgtgat--ATATTGA-GACAAA--CATACAATTAAAGG-------TGTGAAATGATCAATCGGGA---ACTT-------AAACT-TGGGTCGAGATATTAAACAAACTGGCA--TAGTTAATATCTGG-AA-AAAA---GAAAT-A-----TA-TTTACA-----TT-CACAAAGAAGGGGTAAA-----G-TTGG-GAAAGGC-TTAAA-ATATCAGCACTACCAGAATATC-ATCTCG-A-GC-GA-TATCGTCA-TAAT-GAATTTCAACTGTA
gi|108339 : aatattataatgacaattacaATCGACA--GA--CAATATCGAG-TA-AAAA---GGAAT-A-----TA-TATATACA---TA-CACAAAGAAGGGGAAAA-----G-TTGG-GAATGGC-AAAAA-ATATCGACACTACTGGAATATC-GACTCT-A-GT-GA-TATTGAGA-TAAT-GAGTTTTGACT
gi|108340 : AAAGAAGAGGAAAATTGGGG-TGGG-GA-TGGC-AAAAA-CTATCGGCTCTATTATAATATC-GACTTG-A--C-GA-TATCGTGA-TAAC-GAGATTCAACTGT
gi|108341 : tacatgcatGAAAG-----G-TTAG-GAATGGC-AACAA-ATATCGACACTACCGGCATATC-GGCTTA-A-GC-AA-TATCGTGA-TAAC-TAGTTTCGACTGTA
gi|108342 : CGGAATATT-GATTCA-A-GC-GA-TATCGAGA-TAAC-GAGTTTCGACTGTA
gi|108343 : GAATATC-TACTCG-A-GT-GATTATCAAGA-TAAC-AAGTTTCAACTGTA
Alignments
lowQualScore : 1 11 444444 1 33 4444444 0 222 4444444 0 3 1 222 444444 1 1 55555 44 3333 2 1 1 0 0 1 1 1 1 1 1
lowQualScore : . .. ...... . .. ....... . ... ....... . . . ... ...... . . ..... .. .... . . . . . . . . . . .
lowQualScore : 0 99 000000 4 33 5555555 3 444 5555555 6 0 0 666 333333 5 5 77777 77 0000 0 5 5 2 2 4 5 5 5 5 5
consensus : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
Reference ( family-601 ) : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGANTGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108310 : AATATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CATTCAGTTAAAGGTG-------TAAAATGATCAACTGGGA---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TAAAAA---GGA------A-TATATTTAGA-----GA-CACAAAGAAGGGGAAAA----GTTGGGGATGGC-AACAA-GTATCGACACTACCAAAATATC-GACCTA-A-GC-GAT-ATCGAAA-TAACGAGTTTCAACTATA
gi|108311 : AATATTATGTCAACAATAGTT--A------TATCGA-GATAAA--CATTCAAGTAAATGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATAGAG-TAAATA---GGA------A-TATATTTACA-----TA-CACAAAGAATGGGAAAA----GTTGGGGATGAC-AAAAA-ATATCAACACTTCAGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAAGGAGTTTCAACTGTA
gi|108312 : AATTTTATGTCCACAATAATT--A------TATCGA-GACAAA--TATTCAATTAAAGGTG-------TGAAATGATCAATTGGAA---ATTA-------AAACTGGGATCGAGATATCCAAAATATCGACATGGACAATATCAAG-TAAAAA---GGA------A-TATATTTACA-----TACAAAAAAAAAAGGGGAAA----GTTGGGAATGGC-ATAAA-CTATCGACAATACCAGAATATC-TACTCG-A-GC-GAT-ATCGAGA-TAATGCATTTCAAGTGTA
gi|108313 : AATATTATGTCGACAATAATT--A------TATCAT-GACAAA--CATTCAATCAAAGACG-------TGAAATGATCAGTTGGGA---AGTA-------AAACTGGGATCAAGATATCCGAAATATTGACACAGAAAATATCGAG-TTAAAA---GGA------A-TATATTTACA-----TA-CACAAAGAAGGGGAAAA----GTTGGGGATGGC-AAAAT-AT-TCGCCACTACCGGAATATC-GACTCA-A-GC-GAT-ACCGAGA-TAATGAGTTTCAATTGTA
gi|108314 : AATATTATGTCAACAATAATT--T------TATCGA-GACAAA--CATTCAATTACAGGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTTG-ATCGAGATATCTGAAATATCGACACA--CAATATCGAG-GAAAAAAAAGGA------A-TATATTTATAATATATA-CACAAAGAAGGGGAAAA----GTTGGGGATTGC-AAAAA-ATATCGATTCTACCGGAATATT-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCAACTGTA
gi|108315 : AATTTTATGTCAAGAGTTAAT--A------AATCGA-GACAAA--CATTCATTTAAAGGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTGGGATTGAGATATCCGAAATATCGACACAGACAGTATCGAG-TTTAAA---GGA------A-TATATTTACA-----TA---CACAGAAGGGAAAAA----GTTGGTGATCGC-AAAAA-ATATTGATACTACCGTGATATC-GATTCC-A-GC-AAT-ATTGAGA-TAACGAGTTTCGACTTTA
gi|108316 : AATATTATGTCAACAACTATC--A------TATTGG-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCAGTA---ACTACCCGTTTAAACTGGGATCGAGATATCCAAAATACCGACACAGACAATATTGAG-TAAAAA---TAAATATACA-TGTATTTATA-----TA-CATAAAGAAGAGGAAAA----GTTGGGGATGGCAAAAAA-ATATTGACACTACTAGAATATT-GACTCA-A-GT-GAT-ATCGAGA-TAATGAGATTCTACTGTA
gi|108317 : AGTATCATGTCATCAATAAAT--A------TATCGA-GACAAA--CAGTCAATTAAAGGAG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGTGATATCCGGAGTATCGACAGAGACAATATCGAG-TTAAAA---GGA------G-TTTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGACTGGC-AAAAA-ATATCGACATTACCGGAATATC-GATTCA-A-GC-GAT-ATCGAGATTAATGAGTTTTGACTGTA
gi|108318 : AATATTAAGTCAACAATAATT--ACATGTATATTGA-GGCAAA--CATTCAATTAAAGGTA-------TGAAATGATCAATCGGGA---ACTA-------AAACTGGGATCGAGAGATTCGAAATATTGACACAGACAATATCCAG-TAAAAA---GGA------A-TATATTTATA-----TA-CACATAGAAGGGGAATA----GTTTGGGATGGC-AAAAA-ATATTGACAAAACCGGAATATT-GACTCG-A-GC-GAT-ATTGAGA-TAACAAGTGTCAACTGTA
gi|108319 : AGTATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CAATCAATTTATGGTG-------TTAACTGATCAATCGGGG---ACTA-------AAACTGGGATCGTAATATCCGGAGTATCAACAGAGACAATATCTAG-TTAAAA---GGA------G-TTTATTTATA-----TA-AGCAAAGAAGGTGAAAA----GTTGGGACTGGC-AAAAA-ATTTCGACATTACCAGAATATC-GATTCA-A-GC-GAT-ATCGAGA-TAAAGAGTTTCGACTGTA
gi|108320 : AGTATTATGTCAACAAGAAAT--A------TATCGA-GACAAA--CAATCAATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGTGATATCCGGAGTATCGACAGAGAAAATATATAG-TTAAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGAACTTGC-AAAAA-ATATCGACATTACCAGAATATC-GATTCA-A--C-AAT-ATCAAGA-TAACGAGTTTCGACTGTA
gi|108321 : AATATTATTTCAACAATTATC--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGGAAGGATCAATCAGGG---ACTA-------AAACTGGGATCGAGATATCTGGAATATCGATACAGATAATATTCAGATAAAAA---GGC------A-TTTATTTATA-----TA-TGCAAAGAAGGGGAAAA----GTTGGGACTGGC--AAAA-ATATCGACATTACCCGAATATC-TACTCA-A-GC-GAT-GTCGATA-TTACGAGTTTCGGCTGTA
gi|108322 : AATATTATGTCAACAATTAA---A------TATCGA-GACAAA--CATTCAATCAAAGGTG-------TAAAATGATCAATCGGGA---ACTA-------AAACAGGGATCCAGATATCCGAACTATCGACACAGACAATATCGAG-CA--------------------------------------CAAAGAAGGGGAAAA----GTTGATGATGGC-AAAAAGATATCGACACTACCGGAATATC-GACTTATATGC-GAT-ATCGAGA-TAACGAGTTTCAACTGTA
gi|108323 : AATATTAAGTCAACAATAATC--A------TATTGA-GACAAA--CATTCAATCAAAGGTGAAATCAATGAAACGATCAATCAGGA---ACTA-------AAACTGAGATC--------CGAAATATCGACACAGACAATATCGAG-TCAAAA---AGA------AATAAATTTACA-----TA-AACAAAGAAGGGGAAA-----GTT-------------AA-ATATCGACACTACCAGAATATT-GACTCA-A-GC-GAT-ATTGAGA-TAACGAGTTTCAACTGTA
gi|108324 : AATATTATGTCAACAATAAAT--A------TATCAA-GACAAA--CATTTCATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATTTCCGGAATATCGACACAGACAATATCGAG-AT---------A------A-TTAATTTTTC-----TA-AGCAAATAATGGGAAAC----GTTGAGACTGGC-AAAAA-ATATCGA-ATAACCGGAATATC-GATCCG-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108325 : AATATTATAATGACAATTACA--A------TATTGA-GACAAA--CATACAATTAAAGGTG-------TGAAATGATCAATCGGGA---ACTT-------AAACTTGGGTCGAGATATTAAACAAACTGGCATAGTTAATATCTGG-AAAAAA---GAA------A-TATATTTACA-----TT-CACAAAGAAGGGGTAAA----GTTGGGAAAGGC-TTAAA-ATATCAGCACTACCAGAATATC-ATCTCG-A-GC-GAT-ATCGTCA-TAATGAATTTCAACTGTA
gi|108326 : AATATTATGTCAACAATAAAT--A------TA----------A--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGGGGGATTT-------AA-CTGGGATCGAGATATCTGGAATATTGACACTGGGA---TCAAG-ATAAAA---GGG------A-TCTATTTATA-----TA-AGCAAAGAAAGGCAAAA----GTTGGGACTGGC-AAAAA-ATATCGACATTACCTGAATAAC-GGCTCA-A-GC-GAT-ATCGAGA-TAATGAGTTTCGACTGTA
gi|108327 : AGTATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CAATCAATTGAAGGTG-------TTAAATGCTCAATCGGCG---ACTG-------AAACTGGGATCGTGATACCCGGAGTATCGACAGAGACAATATCGAG-TTAAAA---GTA------G-TTTATTTATA-----TA-AGCAATGAAGGGGAAAA----GTTGGGACTGGC-AAAAC-ATATC-ACATAAC--GAGTTTC-GACT
gi|108328 : AATTTTATGTCAACAATAAAT--A------TATCAA-GACCAA--CATTCAATT--------------------GATCAATCGGGG---ACTA-------AAACTAGGATCAAGATATCAGGAATATCGACATTGACAACATCGAG-ATTAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGGGGGAAA----GTTGGGACTGGC-AAGAA-ATATCGACATTACCGTAATATC-GACT
gi|108329 : AATATTATGTCAACAATTATT--A------TATCGA-GACAAA--CATTCACATAAAGGTG-------TGAA------------------CTA-------AAACT-----CGAGAT---CGAGATATCGACTCAGACAATATCGAG-TAAAAG---GGA------A-TATATTTACA-----TA-GACAGAGAAGAGGAAAA----AATGAGGATGGC-AA--------------------AATATT-GATTAA-T-GC-GAT-ACCGAGA-CAATGAGTTTCAACTGTA
gi|108330 : AGTATTATGGCAACAATAAAT--T------TATGGA-GACAAA--CAATCAATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTT-------AAACTGCGATCGTGATATCTGAAGTAGCGACAGAGACAATATTGAG-TTAAAA---GGA------A-TTTATTTATA-----TA-ACCAAAGAAGGGGAAAA----TTTGGGA
gi|108331 : AGTATTAAACCGACAATAAAT--A------TATCGA-GACAAA--CAATCAA--------------------ATTATCAATATGGG---ACTA-------AAACTGGGATCGTTATATCCGGAGTATCGACAGAGACAATATCGAGTTGAAAA---GGT------A-TTTATTTATA-----TA-AGAAAAGAAGGGGAAAA----GTTGGAACTTGC----AA-AT--------------AATATC-GATTCA-A-GC-GAT-ATCGAGA-TATCGAGTTTCCACTGTA
gi|108332 : AATATTTTGTCAACAATTTTC--G------TATCGA-GACAAT--CATTCAATTAAAGGTG-------TGAAATTATCAATCGGGA---ACTA-------AAATTGAAATAGAGATATCCAAATTTTCGATACAAAC
gi|108333 : AATATTATGTCAACAATTATT--A------TATTGA-GATAAAA-CATTCAAATGAAAATG-------TGATTTGATCAGTCGAGA---ACTA-------AAGCAGGGATCGAGATAGCGAAAATATCGACA
gi|108334 : AATATCATGTCAAC--TGCTTTGA------TATCAA-GACAAA--CATTCATTCTAAGGCG-------TAAAATGATCAATTGGGA---ACTA-------CAATTGGGATCGATATATCCGAAATATCAACAaa
gi|108335 : ATATTATGTCAACAATAAAT--A------TATCGAAGACAAA--CATTCAATTAAAGTTG-------TGAA------------GG---ACTA-------AAACTGGGATCGAGATATCTGGAATATCGACGCAGACAATATCGAG-ATAAAA---GGA------A-TTTATTTATA-----TA-AGCA---AAGGGGAAAA----GTT-GGACTGGC-AAAAA-ATATCAACATTACTGGAA-ATTGGACTCA-A-GG-GTT-ACCGAGA-TAACGAGTTTCAACTGTA
gi|108336 : TATTATGTCAACAGTCCAT--A------TAACAA-GACAAAAACAATCAATTAAAGGTG-------ATAAATGATCAATCGGAG---ACTA-------AATCTAAGATCGTGATATCGGGAGAATAGACAGAGACAATATCGAG-TTAAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGAGGAAAA----GTTGGG---------AAA-ATATCAACATTACCAGAATATT-GTTTTA-A-ACTGAT-A
gi|108337 : T--A------TATCAA-GACAAA--CATTCAATTAAAGGTG-------TTAAATGATCAATTGGGG---ACTA-------AAACTGGAATCAAGATATCCAGAATATCGACACAGACAATATCGAG-ATAAAA---GGA------A-TTTG-TTA-A-----TA-AGTAAAGAAGGGGAGAA----GATTGGACTGGC-AAAAA-ATATCAACATTACCAGAATATC-GACTCA-A-GT-GAT-ATCAAGA-TAACGAGTTTCGACTGTA
gi|108338 : aacaaactgtgataACAATAATT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGA---ACTA-------AAACTGGGATTGAGATATCCAAAATATCGATAAAGACAATATCCAG-TAAAAA---GGA------A-TAAATTTACA-----TA-CACAAAGA
gi|108339 : ATCGACA--GACAATATCGAG-TAAAAA---GGA------A-TATATATATACA---TA-CACAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACTGGAATATC-GACTCT-A-GT-GAT-ATTGAGA-TAATGAGTTTTGACT
gi|108340 : AAAGAAGAGGAAAATTGGGGTGGGGATGGC-AAAAA-CTATCGGCTCTATTATAATATC-GACTTG-A--C-GAT-ATCGTGA-TAACGAGATTCAACTGT
gi|108341 : tacatgcatGAAAG----GTTAGGAATGGC-AACAA-ATATCGACACTACCGGCATATC-GGCTTA-A-GC-AAT-ATCGTGA-TAACTAGTTTCGACTGTA
gi|108342 : CGGAATATT-GATTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108343 : GAATATC-TACTCG-A-GT-GATTATCAAGA-TAACAAGTTTCAACTGTA
Alignments
lowQualScore : 1 11 444444 1 33 4444444 0 222 4444444 0 3 1 222 444444 1 1 55555 44 3333 2 1 1 0 0 1 1 1 1 1 1
lowQualScore : . .. ...... . .. ....... . ... ....... . . . ... ...... . . ..... .. .... . . . . . . . . . . .
lowQualScore : 0 99 000000 4 33 5555555 3 444 5555555 6 0 0 666 333333 5 5 77777 77 0000 6 5 5 2 2 4 5 5 5 5 5
consensus : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
Reference ( family-601 ) : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108310 : AATATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CATTCAGTTAAAGGTG-------TAAAATGATCAACTGGGA---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TAAAAA---GGA------A-TATATTTAGA-----GA-CACAAAGAAGGGGAAAA----GTTGGGGATGGC-AACAA-GTATCGACACTACCAAAATATC-GACCTA-A-GC-GAT-ATCGAAA-TAACGAGTTTCAACTATA
gi|108311 : AATATTATGTCAACAATAGTT--A------TATCGA-GATAAA--CATTCAAGTAAATGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATAGAG-TAAATA---GGA------A-TATATTTACA-----TA-CACAAAGAATGGGAAAA----GTTGGGGATGAC-AAAAA-ATATCAACACTTCAGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAAGGAGTTTCAACTGTA
gi|108312 : AATTTTATGTCCACAATAATT--A------TATCGA-GACAAA--TATTCAATTAAAGGTG-------TGAAATGATCAATTGGAA---ATTA-------AAACTGGGATCGAGATATCCAAAATATCGACATGGACAATATCAAG-TAAAAA---GGA------A-TATATTTACA-----TACAAAAAAAAAAGGGGAAA----GTTGGGAATGGC-ATAAA-CTATCGACAATACCAGAATATC-TACTCG-A-GC-GAT-ATCGAGA-TAATGCATTTCAAGTGTA
gi|108313 : AATATTATGTCGACAATAATT--A------TATCAT-GACAAA--CATTCAATCAAAGACG-------TGAAATGATCAGTTGGGA---AGTA-------AAACTGGGATCAAGATATCCGAAATATTGACACAGAAAATATCGAG-TTAAAA---GGA------A-TATATTTACA-----TA-CACAAAGAAGGGGAAAA----GTTGGGGATGGC-AAAAT-AT-TCGCCACTACCGGAATATC-GACTCA-A-GC-GAT-ACCGAGA-TAATGAGTTTCAATTGTA
gi|108314 : AATATTATGTCAACAATAATT--T------TATCGA-GACAAA--CATTCAATTACAGGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTTG-ATCGAGATATCTGAAATATCGACACA--CAATATCGAG-GAAAAAAAAGGA------A-TATATTTATAATATATA-CACAAAGAAGGGGAAAA----GTTGGGGATTGC-AAAAA-ATATCGATTCTACCGGAATATT-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCAACTGTA
gi|108315 : AATTTTATGTCAAGAGTTAAT--A------AATCGA-GACAAA--CATTCATTTAAAGGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTGGGATTGAGATATCCGAAATATCGACACAGACAGTATCGAG-TTTAAA---GGA------A-TATATTTACA-----TA---CACAGAAGGGAAAAA----GTTGGTGATCGC-AAAAA-ATATTGATACTACCGTGATATC-GATTCC-A-GC-AAT-ATTGAGA-TAACGAGTTTCGACTTTA
gi|108316 : AATATTATGTCAACAACTATC--A------TATTGG-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCAGTA---ACTACCCGTTTAAACTGGGATCGAGATATCCAAAATACCGACACAGACAATATTGAG-TAAAAA---TAAATATACA-TGTATTTATA-----TA-CATAAAGAAGAGGAAAA----GTTGGGGATGGCAAAAAA-ATATTGACACTACTAGAATATT-GACTCA-A-GT-GAT-ATCGAGA-TAATGAGATTCTACTGTA
gi|108317 : AGTATCATGTCATCAATAAAT--A------TATCGA-GACAAA--CAGTCAATTAAAGGAG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGTGATATCCGGAGTATCGACAGAGACAATATCGAG-TTAAAA---GGA------G-TTTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGACTGGC-AAAAA-ATATCGACATTACCGGAATATC-GATTCA-A-GC-GAT-ATCGAGATTAATGAGTTTTGACTGTA
gi|108318 : AATATTAAGTCAACAATAATT--ACATGTATATTGA-GGCAAA--CATTCAATTAAAGGTA-------TGAAATGATCAATCGGGA---ACTA-------AAACTGGGATCGAGAGATTCGAAATATTGACACAGACAATATCCAG-TAAAAA---GGA------A-TATATTTATA-----TA-CACATAGAAGGGGAATA----GTTTGGGATGGC-AAAAA-ATATTGACAAAACCGGAATATT-GACTCG-A-GC-GAT-ATTGAGA-TAACAAGTGTCAACTGTA
gi|108319 : AGTATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CAATCAATTTATGGTG-------TTAACTGATCAATCGGGG---ACTA-------AAACTGGGATCGTAATATCCGGAGTATCAACAGAGACAATATCTAG-TTAAAA---GGA------G-TTTATTTATA-----TA-AGCAAAGAAGGTGAAAA----GTTGGGACTGGC-AAAAA-ATTTCGACATTACCAGAATATC-GATTCA-A-GC-GAT-ATCGAGA-TAAAGAGTTTCGACTGTA
gi|108320 : AGTATTATGTCAACAAGAAAT--A------TATCGA-GACAAA--CAATCAATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGTGATATCCGGAGTATCGACAGAGAAAATATATAG-TTAAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGAACTTGC-AAAAA-ATATCGACATTACCAGAATATC-GATTCA-A--C-AAT-ATCAAGA-TAACGAGTTTCGACTGTA
gi|108321 : AATATTATTTCAACAATTATC--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGGAAGGATCAATCAGGG---ACTA-------AAACTGGGATCGAGATATCTGGAATATCGATACAGATAATATTCAGATAAAAA---GGC------A-TTTATTTATA-----TA-TGCAAAGAAGGGGAAAA----GTTGGGACTGGC--AAAA-ATATCGACATTACCCGAATATC-TACTCA-A-GC-GAT-GTCGATA-TTACGAGTTTCGGCTGTA
gi|108322 : AATATTATGTCAACAATTAA---A------TATCGA-GACAAA--CATTCAATCAAAGGTG-------TAAAATGATCAATCGGGA---ACTA-------AAACAGGGATCCAGATATCCGAACTATCGACACAGACAATATCGAG-CA--------------------------------------CAAAGAAGGGGAAAA----GTTGATGATGGC-AAAAAGATATCGACACTACCGGAATATC-GACTTATATGC-GAT-ATCGAGA-TAACGAGTTTCAACTGTA
gi|108323 : AATATTAAGTCAACAATAATC--A------TATTGA-GACAAA--CATTCAATCAAAGGTGAAATCAATGAAACGATCAATCAGGA---ACTA-------AAACTGAGATC--------CGAAATATCGACACAGACAATATCGAG-TCAAAA---AGA------AATAAATTTACA-----TA-AACAAAGAAGGGGAAA-----GTT-------------AA-ATATCGACACTACCAGAATATT-GACTCA-A-GC-GAT-ATTGAGA-TAACGAGTTTCAACTGTA
gi|108324 : AATATTATGTCAACAATAAAT--A------TATCAA-GACAAA--CATTTCATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATTTCCGGAATATCGACACAGACAATATCGAG-AT---------A------A-TTAATTTTTC-----TA-AGCAAATAATGGGAAAC----GTTGAGACTGGC-AAAAA-ATATCGA-ATAACCGGAATATC-GATCCG-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108325 : AATATTATAATGACAATTACA--A------TATTGA-GACAAA--CATACAATTAAAGGTG-------TGAAATGATCAATCGGGA---ACTT-------AAACTTGGGTCGAGATATTAAACAAACTGGCATAGTTAATATCTGG-AAAAAA---GAA------A-TATATTTACA-----TT-CACAAAGAAGGGGTAAA----GTTGGGAAAGGC-TTAAA-ATATCAGCACTACCAGAATATC-ATCTCG-A-GC-GAT-ATCGTCA-TAATGAATTTCAACTGTA
gi|108326 : AATATTATGTCAACAATAAAT--A------TA----------A--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGGGGGATTT-------AA-CTGGGATCGAGATATCTGGAATATTGACACTGGGA---TCAAG-ATAAAA---GGG------A-TCTATTTATA-----TA-AGCAAAGAAAGGCAAAA----GTTGGGACTGGC-AAAAA-ATATCGACATTACCTGAATAAC-GGCTCA-A-GC-GAT-ATCGAGA-TAATGAGTTTCGACTGTA
gi|108327 : AGTATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CAATCAATTGAAGGTG-------TTAAATGCTCAATCGGCG---ACTG-------AAACTGGGATCGTGATACCCGGAGTATCGACAGAGACAATATCGAG-TTAAAA---GTA------G-TTTATTTATA-----TA-AGCAATGAAGGGGAAAA----GTTGGGACTGGC-AAAAC-ATATC-ACATAAC--GAGTTTC-GACT
gi|108328 : AATTTTATGTCAACAATAAAT--A------TATCAA-GACCAA--CATTCAATT--------------------GATCAATCGGGG---ACTA-------AAACTAGGATCAAGATATCAGGAATATCGACATTGACAACATCGAG-ATTAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGGGGGAAA----GTTGGGACTGGC-AAGAA-ATATCGACATTACCGTAATATC-GACT
gi|108329 : AATATTATGTCAACAATTATT--A------TATCGA-GACAAA--CATTCACATAAAGGTG-------TGAA------------------CTA-------AAACT-----CGAGAT---CGAGATATCGACTCAGACAATATCGAG-TAAAAG---GGA------A-TATATTTACA-----TA-GACAGAGAAGAGGAAAA----AATGAGGATGGC-AA--------------------AATATT-GATTAA-T-GC-GAT-ACCGAGA-CAATGAGTTTCAACTGTA
gi|108330 : AGTATTATGGCAACAATAAAT--T------TATGGA-GACAAA--CAATCAATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTT-------AAACTGCGATCGTGATATCTGAAGTAGCGACAGAGACAATATTGAG-TTAAAA---GGA------A-TTTATTTATA-----TA-ACCAAAGAAGGGGAAAA----TTTGGGA
gi|108331 : AGTATTAAACCGACAATAAAT--A------TATCGA-GACAAA--CAATCAA--------------------ATTATCAATATGGG---ACTA-------AAACTGGGATCGTTATATCCGGAGTATCGACAGAGACAATATCGAGTTGAAAA---GGT------A-TTTATTTATA-----TA-AGAAAAGAAGGGGAAAA----GTTGGAACTTGC----AA-AT--------------AATATC-GATTCA-A-GC-GAT-ATCGAGA-TATCGAGTTTCCACTGTA
gi|108332 : AATATTTTGTCAACAATTTTC--G------TATCGA-GACAAT--CATTCAATTAAAGGTG-------TGAAATTATCAATCGGGA---ACTA-------AAATTGAAATAGAGATATCCAAATTTTCGATACAAAC
gi|108333 : AATATTATGTCAACAATTATT--A------TATTGA-GATAAAA-CATTCAAATGAAAATG-------TGATTTGATCAGTCGAGA---ACTA-------AAGCAGGGATCGAGATAGCGAAAATATCGACA
gi|108334 : AATATCATGTCAAC--TGCTTTGA------TATCAA-GACAAA--CATTCATTCTAAGGCG-------TAAAATGATCAATTGGGA---ACTA-------CAATTGGGATCGATATATCCGAAATATCAACAaa
gi|108335 : ATATTATGTCAACAATAAAT--A------TATCGAAGACAAA--CATTCAATTAAAGTTG-------TGAA------------GG---ACTA-------AAACTGGGATCGAGATATCTGGAATATCGACGCAGACAATATCGAG-ATAAAA---GGA------A-TTTATTTATA-----TA-AGCA---AAGGGGAAAA----GTT-GGACTGGC-AAAAA-ATATCAACATTACTGGAA-ATTGGACTCA-A-GG-GTT-ACCGAGA-TAACGAGTTTCAACTGTA
gi|108336 : TATTATGTCAACAGTCCAT--A------TAACAA-GACAAAAACAATCAATTAAAGGTG-------ATAAATGATCAATCGGAG---ACTA-------AATCTAAGATCGTGATATCGGGAGAATAGACAGAGACAATATCGAG-TTAAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGAGGAAAA----GTTGGG---------AAA-ATATCAACATTACCAGAATATT-GTTTTA-A-ACTGAT-A
gi|108337 : T--A------TATCAA-GACAAA--CATTCAATTAAAGGTG-------TTAAATGATCAATTGGGG---ACTA-------AAACTGGAATCAAGATATCCAGAATATCGACACAGACAATATCGAG-ATAAAA---GGA------A-TTTG-TTA-A-----TA-AGTAAAGAAGGGGAGAA----GATTGGACTGGC-AAAAA-ATATCAACATTACCAGAATATC-GACTCA-A-GT-GAT-ATCAAGA-TAACGAGTTTCGACTGTA
gi|108338 : aacaaactgtgataACAATAATT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGA---ACTA-------AAACTGGGATTGAGATATCCAAAATATCGATAAAGACAATATCCAG-TAAAAA---GGA------A-TAAATTTACA-----TA-CACAAAGA
gi|108339 : ATCGACA--GACAATATCGAG-TAAAAA---GGA------A-TATATATATACA---TA-CACAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACTGGAATATC-GACTCT-A-GT-GAT-ATTGAGA-TAATGAGTTTTGACT
gi|108340 : AAAGAAGAGGAAAATTGGGGTGGGGATGGC-AAAAA-CTATCGGCTCTATTATAATATC-GACTTG-A--C-GAT-ATCGTGA-TAACGAGATTCAACTGT
gi|108341 : tacatgcatGAAAG----GTTAGGAATGGC-AACAA-ATATCGACACTACCGGCATATC-GGCTTA-A-GC-AAT-ATCGTGA-TAACTAGTTTCGACTGTA
gi|108342 : CGGAATATT-GATTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108343 : GAATATC-TACTCG-A-GT-GATTATCAAGA-TAACAAGTTTCAACTGTA
blockSeqs : T TG CATGTA A AA AAATCAA GGG CCCGTTT A A AAA ATATAC A A ATATA CA TTGG A A G G T T T T T
blockSeqs : T . . . A . . . T A . . . A CA C . A . . . . . . . .
blockSeqs : T . . . . . . . . T . . . A . C . A . . . . . . . .
blockSeqs : T . . . . . . . . A . . . A . C . A . . . . . . . .
blockSeqs : A . . . . . . . . T . . . A . C . A . . . . . . . .
blockSeqs : T . . . . . . . . A . . . G . A . A . . . . . . . .
blockSeqs : A . . . . . . . . T . . . T . C . C . . . . . . . .
blockSeqs : T . . . . . . . . A . . . A . A . A . . . . . . . .
blockSeqs : A . . . . . . . . T . . . T . A . C . . . . . . . .
blockSeqs : A . . . . . . . . T . . . T . T . C . . . . . . . .
blockSeqs : T . . . . . . . . A . . . T . A . C . . . . . . . .
blockSeqs : A . . . . . . . . A . . . A . A . A . . . . . . . .
blockSeqs : T . . . . . . . . C . . . T . C . C . . . . . . . .
blockSeqs : A . . . . . . . . T . . . A . A . A . . . . . . . .
blockSeqs : C . . . . . . . . A . . . C . A . C . . . . . . . .
blockSeqs : A . . . . . . . . T . . . T . A . C . . . . . . . .
blockSeqs : A . . . . . . . . T . . . T . G . C . . . . . . . .
blockSeqs : A . . . . . . . . T . . . A . A . A . . . . . . . .
blockSeqs : T . . . . . . . . A . . . T . A . C . . . . . . . .
blockSeqs : A . . . . . . . . T . . . T . A . C . . . . . . . .
blockSeqs : A . . . . . . . . G . . . T . A . C . . . . . . . .
blockSeqs : T . . . . . . . . T . . . T . A . A . . . . . . . .
blockSeqs : T . . . . . . . . T . . . T . C . A . . . . . . . .
blockSeqs : T . . . . . . . . T . . . A . C . A . . . . . . . .
blockSeqs : A . . . . . . . . A . . . A . . . . . . . . . . . .
blockSeqs : A . . . . . . . . A . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
finalCons : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
Alignments
lowQualScore : 1 11 444444 1 33 4444444 0 222 4444444 0 3 1 222 444444 1 1 55555 44 3333 2 1 1 0 0 1 1 1 1 1 1
lowQualScore : . .. ...... . .. ....... . ... ....... . . . ... ...... . . ..... .. .... . . . . . . . . . . .
lowQualScore : 0 99 000000 4 33 5555555 3 444 5555555 6 0 0 666 333333 5 5 77777 77 0000 6 5 5 2 2 4 5 5 5 5 5
consensus : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
Reference ( family-601 ) : AATATTATGTCAACAATAANT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TNAAAA---GGA------A-TNTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACCGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108310 : AATATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CATTCAGTTAAAGGTG-------TAAAATGATCAACTGGGA---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATCGAG-TAAAAA---GGA------A-TATATTTAGA-----GA-CACAAAGAAGGGGAAAA----GTTGGGGATGGC-AACAA-GTATCGACACTACCAAAATATC-GACCTA-A-GC-GAT-ATCGAAA-TAACGAGTTTCAACTATA
gi|108311 : AATATTATGTCAACAATAGTT--A------TATCGA-GATAAA--CATTCAAGTAAATGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTGGGATCGAGATATCCGAAATATCGACACAGACAATATAGAG-TAAATA---GGA------A-TATATTTACA-----TA-CACAAAGAATGGGAAAA----GTTGGGGATGAC-AAAAA-ATATCAACACTTCAGGAATATC-GACTCA-A-GC-GAT-ATCGAGA-TAAGGAGTTTCAACTGTA
gi|108312 : AATTTTATGTCCACAATAATT--A------TATCGA-GACAAA--TATTCAATTAAAGGTG-------TGAAATGATCAATTGGAA---ATTA-------AAACTGGGATCGAGATATCCAAAATATCGACATGGACAATATCAAG-TAAAAA---GGA------A-TATATTTACA-----TACAAAAAAAAAAGGGGAAA----GTTGGGAATGGC-ATAAA-CTATCGACAATACCAGAATATC-TACTCG-A-GC-GAT-ATCGAGA-TAATGCATTTCAAGTGTA
gi|108313 : AATATTATGTCGACAATAATT--A------TATCAT-GACAAA--CATTCAATCAAAGACG-------TGAAATGATCAGTTGGGA---AGTA-------AAACTGGGATCAAGATATCCGAAATATTGACACAGAAAATATCGAG-TTAAAA---GGA------A-TATATTTACA-----TA-CACAAAGAAGGGGAAAA----GTTGGGGATGGC-AAAAT-AT-TCGCCACTACCGGAATATC-GACTCA-A-GC-GAT-ACCGAGA-TAATGAGTTTCAATTGTA
gi|108314 : AATATTATGTCAACAATAATT--T------TATCGA-GACAAA--CATTCAATTACAGGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTTG-ATCGAGATATCTGAAATATCGACACA--CAATATCGAG-GAAAAAAAAGGA------A-TATATTTATAATATATA-CACAAAGAAGGGGAAAA----GTTGGGGATTGC-AAAAA-ATATCGATTCTACCGGAATATT-GACTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCAACTGTA
gi|108315 : AATTTTATGTCAAGAGTTAAT--A------AATCGA-GACAAA--CATTCATTTAAAGGTG-------TGAAATGATCAATTGGGA---ACTA-------AAACTGGGATTGAGATATCCGAAATATCGACACAGACAGTATCGAG-TTTAAA---GGA------A-TATATTTACA-----TA---CACAGAAGGGAAAAA----GTTGGTGATCGC-AAAAA-ATATTGATACTACCGTGATATC-GATTCC-A-GC-AAT-ATTGAGA-TAACGAGTTTCGACTTTA
gi|108316 : AATATTATGTCAACAACTATC--A------TATTGG-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCAGTA---ACTACCCGTTTAAACTGGGATCGAGATATCCAAAATACCGACACAGACAATATTGAG-TAAAAA---TAAATATACA-TGTATTTATA-----TA-CATAAAGAAGAGGAAAA----GTTGGGGATGGCAAAAAA-ATATTGACACTACTAGAATATT-GACTCA-A-GT-GAT-ATCGAGA-TAATGAGATTCTACTGTA
gi|108317 : AGTATCATGTCATCAATAAAT--A------TATCGA-GACAAA--CAGTCAATTAAAGGAG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGTGATATCCGGAGTATCGACAGAGACAATATCGAG-TTAAAA---GGA------G-TTTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGGACTGGC-AAAAA-ATATCGACATTACCGGAATATC-GATTCA-A-GC-GAT-ATCGAGATTAATGAGTTTTGACTGTA
gi|108318 : AATATTAAGTCAACAATAATT--ACATGTATATTGA-GGCAAA--CATTCAATTAAAGGTA-------TGAAATGATCAATCGGGA---ACTA-------AAACTGGGATCGAGAGATTCGAAATATTGACACAGACAATATCCAG-TAAAAA---GGA------A-TATATTTATA-----TA-CACATAGAAGGGGAATA----GTTTGGGATGGC-AAAAA-ATATTGACAAAACCGGAATATT-GACTCG-A-GC-GAT-ATTGAGA-TAACAAGTGTCAACTGTA
gi|108319 : AGTATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CAATCAATTTATGGTG-------TTAACTGATCAATCGGGG---ACTA-------AAACTGGGATCGTAATATCCGGAGTATCAACAGAGACAATATCTAG-TTAAAA---GGA------G-TTTATTTATA-----TA-AGCAAAGAAGGTGAAAA----GTTGGGACTGGC-AAAAA-ATTTCGACATTACCAGAATATC-GATTCA-A-GC-GAT-ATCGAGA-TAAAGAGTTTCGACTGTA
gi|108320 : AGTATTATGTCAACAAGAAAT--A------TATCGA-GACAAA--CAATCAATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGTGATATCCGGAGTATCGACAGAGAAAATATATAG-TTAAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGGGGAAAA----GTTGGAACTTGC-AAAAA-ATATCGACATTACCAGAATATC-GATTCA-A--C-AAT-ATCAAGA-TAACGAGTTTCGACTGTA
gi|108321 : AATATTATTTCAACAATTATC--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGGAAGGATCAATCAGGG---ACTA-------AAACTGGGATCGAGATATCTGGAATATCGATACAGATAATATTCAGATAAAAA---GGC------A-TTTATTTATA-----TA-TGCAAAGAAGGGGAAAA----GTTGGGACTGGC--AAAA-ATATCGACATTACCCGAATATC-TACTCA-A-GC-GAT-GTCGATA-TTACGAGTTTCGGCTGTA
gi|108322 : AATATTATGTCAACAATTAA---A------TATCGA-GACAAA--CATTCAATCAAAGGTG-------TAAAATGATCAATCGGGA---ACTA-------AAACAGGGATCCAGATATCCGAACTATCGACACAGACAATATCGAG-CA--------------------------------------CAAAGAAGGGGAAAA----GTTGATGATGGC-AAAAAGATATCGACACTACCGGAATATC-GACTTATATGC-GAT-ATCGAGA-TAACGAGTTTCAACTGTA
gi|108323 : AATATTAAGTCAACAATAATC--A------TATTGA-GACAAA--CATTCAATCAAAGGTGAAATCAATGAAACGATCAATCAGGA---ACTA-------AAACTGAGATC--------CGAAATATCGACACAGACAATATCGAG-TCAAAA---AGA------AATAAATTTACA-----TA-AACAAAGAAGGGGAAA-----GTT-------------AA-ATATCGACACTACCAGAATATT-GACTCA-A-GC-GAT-ATTGAGA-TAACGAGTTTCAACTGTA
gi|108324 : AATATTATGTCAACAATAAAT--A------TATCAA-GACAAA--CATTTCATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTA-------AAACTGGGATCGAGATTTCCGGAATATCGACACAGACAATATCGAG-AT---------A------A-TTAATTTTTC-----TA-AGCAAATAATGGGAAAC----GTTGAGACTGGC-AAAAA-ATATCGA-ATAACCGGAATATC-GATCCG-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108325 : AATATTATAATGACAATTACA--A------TATTGA-GACAAA--CATACAATTAAAGGTG-------TGAAATGATCAATCGGGA---ACTT-------AAACTTGGGTCGAGATATTAAACAAACTGGCATAGTTAATATCTGG-AAAAAA---GAA------A-TATATTTACA-----TT-CACAAAGAAGGGGTAAA----GTTGGGAAAGGC-TTAAA-ATATCAGCACTACCAGAATATC-ATCTCG-A-GC-GAT-ATCGTCA-TAATGAATTTCAACTGTA
gi|108326 : AATATTATGTCAACAATAAAT--A------TA----------A--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGGGGGATTT-------AA-CTGGGATCGAGATATCTGGAATATTGACACTGGGA---TCAAG-ATAAAA---GGG------A-TCTATTTATA-----TA-AGCAAAGAAAGGCAAAA----GTTGGGACTGGC-AAAAA-ATATCGACATTACCTGAATAAC-GGCTCA-A-GC-GAT-ATCGAGA-TAATGAGTTTCGACTGTA
gi|108327 : AGTATTATGTCAACAATAAAT--A------TATCGA-GACAAA--CAATCAATTGAAGGTG-------TTAAATGCTCAATCGGCG---ACTG-------AAACTGGGATCGTGATACCCGGAGTATCGACAGAGACAATATCGAG-TTAAAA---GTA------G-TTTATTTATA-----TA-AGCAATGAAGGGGAAAA----GTTGGGACTGGC-AAAAC-ATATC-ACATAAC--GAGTTTC-GACT
gi|108328 : AATTTTATGTCAACAATAAAT--A------TATCAA-GACCAA--CATTCAATT--------------------GATCAATCGGGG---ACTA-------AAACTAGGATCAAGATATCAGGAATATCGACATTGACAACATCGAG-ATTAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGGGGGAAA----GTTGGGACTGGC-AAGAA-ATATCGACATTACCGTAATATC-GACT
gi|108329 : AATATTATGTCAACAATTATT--A------TATCGA-GACAAA--CATTCACATAAAGGTG-------TGAA------------------CTA-------AAACT-----CGAGAT---CGAGATATCGACTCAGACAATATCGAG-TAAAAG---GGA------A-TATATTTACA-----TA-GACAGAGAAGAGGAAAA----AATGAGGATGGC-AA--------------------AATATT-GATTAA-T-GC-GAT-ACCGAGA-CAATGAGTTTCAACTGTA
gi|108330 : AGTATTATGGCAACAATAAAT--T------TATGGA-GACAAA--CAATCAATTAAAGGTG-------TTAAATGATCAATCGGGG---ACTT-------AAACTGCGATCGTGATATCTGAAGTAGCGACAGAGACAATATTGAG-TTAAAA---GGA------A-TTTATTTATA-----TA-ACCAAAGAAGGGGAAAA----TTTGGGA
gi|108331 : AGTATTAAACCGACAATAAAT--A------TATCGA-GACAAA--CAATCAA--------------------ATTATCAATATGGG---ACTA-------AAACTGGGATCGTTATATCCGGAGTATCGACAGAGACAATATCGAGTTGAAAA---GGT------A-TTTATTTATA-----TA-AGAAAAGAAGGGGAAAA----GTTGGAACTTGC----AA-AT--------------AATATC-GATTCA-A-GC-GAT-ATCGAGA-TATCGAGTTTCCACTGTA
gi|108332 : AATATTTTGTCAACAATTTTC--G------TATCGA-GACAAT--CATTCAATTAAAGGTG-------TGAAATTATCAATCGGGA---ACTA-------AAATTGAAATAGAGATATCCAAATTTTCGATACAAAC
gi|108333 : AATATTATGTCAACAATTATT--A------TATTGA-GATAAAA-CATTCAAATGAAAATG-------TGATTTGATCAGTCGAGA---ACTA-------AAGCAGGGATCGAGATAGCGAAAATATCGACA
gi|108334 : AATATCATGTCAAC--TGCTTTGA------TATCAA-GACAAA--CATTCATTCTAAGGCG-------TAAAATGATCAATTGGGA---ACTA-------CAATTGGGATCGATATATCCGAAATATCAACAaa
gi|108335 : ATATTATGTCAACAATAAAT--A------TATCGAAGACAAA--CATTCAATTAAAGTTG-------TGAA------------GG---ACTA-------AAACTGGGATCGAGATATCTGGAATATCGACGCAGACAATATCGAG-ATAAAA---GGA------A-TTTATTTATA-----TA-AGCA---AAGGGGAAAA----GTT-GGACTGGC-AAAAA-ATATCAACATTACTGGAA-ATTGGACTCA-A-GG-GTT-ACCGAGA-TAACGAGTTTCAACTGTA
gi|108336 : TATTATGTCAACAGTCCAT--A------TAACAA-GACAAAAACAATCAATTAAAGGTG-------ATAAATGATCAATCGGAG---ACTA-------AATCTAAGATCGTGATATCGGGAGAATAGACAGAGACAATATCGAG-TTAAAA---GGA------A-TTTATTTATA-----TA-AGCAAAGAAGAGGAAAA----GTTGGG---------AAA-ATATCAACATTACCAGAATATT-GTTTTA-A-ACTGAT-A
gi|108337 : T--A------TATCAA-GACAAA--CATTCAATTAAAGGTG-------TTAAATGATCAATTGGGG---ACTA-------AAACTGGAATCAAGATATCCAGAATATCGACACAGACAATATCGAG-ATAAAA---GGA------A-TTTG-TTA-A-----TA-AGTAAAGAAGGGGAGAA----GATTGGACTGGC-AAAAA-ATATCAACATTACCAGAATATC-GACTCA-A-GT-GAT-ATCAAGA-TAACGAGTTTCGACTGTA
gi|108338 : aacaaactgtgataACAATAATT--A------TATCGA-GACAAA--CATTCAATTAAAGGTG-------TGAAATGATCAATCGGGA---ACTA-------AAACTGGGATTGAGATATCCAAAATATCGATAAAGACAATATCCAG-TAAAAA---GGA------A-TAAATTTACA-----TA-CACAAAGA
gi|108339 : ATCGACA--GACAATATCGAG-TAAAAA---GGA------A-TATATATATACA---TA-CACAAAGAAGGGGAAAA----GTTGGGAATGGC-AAAAA-ATATCGACACTACTGGAATATC-GACTCT-A-GT-GAT-ATTGAGA-TAATGAGTTTTGACT
gi|108340 : AAAGAAGAGGAAAATTGGGGTGGGGATGGC-AAAAA-CTATCGGCTCTATTATAATATC-GACTTG-A--C-GAT-ATCGTGA-TAACGAGATTCAACTGT
gi|108341 : tacatgcatGAAAG----GTTAGGAATGGC-AACAA-ATATCGACACTACCGGCATATC-GGCTTA-A-GC-AAT-ATCGTGA-TAACTAGTTTCGACTGTA
gi|108342 : CGGAATATT-GATTCA-A-GC-GAT-ATCGAGA-TAACGAGTTTCGACTGTA
gi|108343 : GAATATC-TACTCG-A-GT-GATTATCAAGA-TAACAAGTTTCAACTGTA