lowQualScore : 2222 11 1111 1 11 1 1 111
lowQualScore : 1111 9 2 7 5 77 0 55 3 2222 6 3 5 3 0 6 99 1 2 444 8 33 1 6 22 22 55 33 4444 333 9999999999 22 5555 5 22 2 3 2 22 333 4444 333 22 44 1 22 444444 1 1 3 1 1 3 5 333 6 1 000 2 33 77777777777 1 88 1 0 6
lowQualScore : .... . . . . .. . .. . .... . . . . . . .. . . ... . .. . . .. .. .. .. .... ... .......... .. .... . .. . . . .. ... .... ... .. .. . .. ...... . . . . . . . ... . . ... . .. ........... . .. . . .
lowQualScore : 4444 0 2 1 7 99 7 00 9 1111 0 3 0 1 5 0 11 5 9 111 1 22 1 9 99 99 88 77 5555 777 2222222222 99 7777 9 99 2 6 2 99 777 5555 555 88 33 6 00 333333 5 5 1 5 5 6 9 555 2 6 666 4 33 99999999999 4 33 4 6 3
consensus : TTTCTTCAAATTACAAAA-NAAAATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGCTTTCCAAAGTTGGTGTCCCGTCAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAAAT--TTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATAAG--T--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGCGTAAAACTCG--TTGCTT-AT--GC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CCA-CNA-ATTT--TT-----------AAT-GCGTC-ATATACGCAGATACGCATCTTATCTGGAGCTCTG
Reference ( gi|111567 ) : TTTCTTCAAATTACAATA-TAAAATTGTCATGGCGTGACAGTCATTTATGATTTAACCCGACGAGCGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTATAACCAGTGATATACCTAAAATATTGAAACA----GCTTTGGGAATTACAGGTATCCCGCCGGTACACTCAGCTTTCCAAAGTTGGTGTCCCGTCAAG-AAAAAATCGAGCAACTTGGCGACATTGTTT-GTTAATTGCACAGACTGGGTTACCATTATAACTGG---TAGAAT--TTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATAAG--T--T-AAAAAATTAGTGGAATGAAGA--TCGAT-TTTCAGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGCGTAAAACTCG--TTGCTT-AT--GC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--ATAT-CCA-CAG-ATTT--TT-----------AAT-GTGTC-ATATACGCAAATACGCATCTTATCTAGAGCTCTG
gi|111569 : TTTCTTCAAATTACAAAA-TAAAATTGTCATGGCATGACAGTCATTTATGATTTACTCCGATGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTT---GAATAGGATTTTCAAACAGTGATATACCTAAAATATTGAAACA----GCTCTGGTTATTACAGGTATCCCACCGGAACACTCATCTTTCCAAAGTTGGTGTCCCGTCAAG-AAAAAATTGAGCAACTTAGTGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATATTTGG---TAAAAT--TTATCACTGAAGCAAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------CGCGGATAAG--TTAT-AAAAAATTAGTACAATGAAGA--TCGAT-TTTCAGAGAATGC-AAAC--T---TATTT----ACAC-----ATAGA--AATTGATTTTAGCGTAAAACTTG--TTGCTTAAT--GT------G-T-AATTGATACGCACATAA-AACAAATCT-TGT-GT--GTAT-CCA-CTA-ATTT--TT-----------AAT-GCGTT-GTACACGCAGA-ACGCATCTTATCTGGAGCTCTG
gi|111568 : TTTCTTTAAATTACAAAAACATAATTGTCATGGTATGACAGTCATTTATGATTTACCCCAAAGAGTAAGCATTTATTATATAAAAA-TAACCTCAATAT--GTTGTTGGATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTAGGAATAACAGGTATCCCGCAGGAACACTCAGCTTTCCAAAGTTAGTGTCCCGTCAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATCGCACTGACTGGGTAACCATCATAACCGG---TAAAAT--TTATAGCTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATAAG--T--T---AAAATTAGTGCAATTAAGA--TAGAT-TTTCACAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGTGTAAAACTCG--TTGCTT-AT--GC------G-T-AATTGATATGCAAGTAA-AACAAATCT-GGT-GC--ATAT-TCA-CAA-AATT--TT-----------AAT-GCATC-ATATACGCAGATACGCATCTTATCTGGAGCTCTG
gi|111570 : TTTGTTCAAATTACAATA--AAAATTGTCATGACGTGACAGTCATTTATGATTTACCCCGATGAGTGAGTGCATATTATATAAAAA-TAACTTCATTAT--GTTGTTAAATAGGACTTTTAACCAGCAATATACCCAAAAAATTGAAATA----GCGCTGGGAATTACATGTATCCCGCTGGAACACTCAGCTTTCCAAAGTTGGTGTCCCGTCAAG-TAAAAATCAAGCAACTTAGCAACGTTGTTT-ATTAACTGCATAGACTGGGTTACCATTATAACCAG---AAAAAT--TTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------TGCGGATAAC--T--T-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCAGAGAATGT-GAAC--T---TA-------ACGCAT---AAAGA--AATTGATTTAAGTGTAAAACTTG--TTGCTT-AT--GT------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CCA-CAA-A-TT--TT-----------AAT-GCGTC-ATATAAGCAGATACGCATCATATCTGGAGCTCTG
gi|111571 : TTTCTTCAAATTACAAAA-TAAAATTGTCATGGCGTAACAGCCATTTATGCTTTAACCCGACACATGAGTGTATACTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGTTATATTGCCCGAACACTCAGCTTTCCAAAGCTGGTATCCCGTCAAGAAAAAAATCAAACAACTTAGCAACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACAGG---TAAAAT--TTATCACTGAAGTGAG-----TTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------AGC---TA---------AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGCGTAAAACTCG--TTGCTT-AT--GC------G-T-ATTTGATATGC-CA-AA-AAAAAATCT-GAT-AC--GTAT-CCA-CAA-ATTT--TT-----------AAT-GCATC-ATATACGCAGATACGCATCTTATCTGGAGCTCTG
gi|111572 : TTTCTTCAAATTACAAAA-TAAAAATGTCTTGGCGTGTCAGTGAT-----ATT-----------------GTA-------TAAAAA-TAACCTC--------------AATAGGATTTATAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCTACTGGTACACTCAGCTTTCCAAAGTTGGTGTCCCGTCAAG-AAAAAATCGAACAACTTAGCGACATTGTTT-ATTAATTGTACAGCCTGGGTTACCATAATAAACAG---TAGAAT--TTATCACTGAAGCAAGTTTAATTGAAACTATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATAAG--T--TAAAAAAATTAGTGCAATGAAGA--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACACAT---GTAGA--AATTGATTTTAGCGTAAAACTCG--TTGCTT-AT--GC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CTG-AAA-ATTT--TT-----------AAT-GCGTC-AAATACGCAGATACGCATCTTATCTGGAGCACTG
gi|111573 : TTTCTTCAAATTACAAAA-AAAAATTGCCATGGCGTGACAGCCATTTATGATTTACCCTAATGAGTGAGCGCATATTATATAAAAAATAACCTCAATAT--GTTGTTAAATAGGATTTTCAAGCAGCTATATACCTAAAATACTGAAACATGCAGCTCTGGGAATTACAGGTACCCCGCCGGAACATTCAGCTTTCCAAAGTTGGTGTCTCATCAAG-AAAAAATCAAGCAACTTAGCAATAGTGTTT-ATCAATTGCATAGACTGGGTTACCATTATAACCGG---TTAAAT--TTATCACTTAAAC
gi|111574 : TTTCTTCAAATTACAAAA--AAAATTGTCATGGCGTGACAGTCATTTATGATTTAATCCGACGACTGAGCGTAT
gi|111575 : TTTTCGAATTACAAAA-AAAAAATGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAA--TAACCTCAATATATGTTGTTGAATAGGAATTTCAACCAGCGATTTACCTAAAATATTGAAACA----GCTCTGAGTATTACAGGTATCCCGCCGGAACACTCAGCTTTCCAAAGTCGGTGTCCCTTCCAG-AAAAAATCAAGCAATTTAGAGACATTGTT--ATTAATTGCATAGACTGGGTTACCATTATAACCGG---TAAAAT--TTATCACTGAAGCCAGTTTAATTGAA-CAAATCAGC--TA--TT--T--ATT----T---A----------CGCGGATAAA--T--A-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCTGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGCTTAAGACTCT--TTACTT-AT--GC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CCA-CAA-A-TT--TG-----------AAT-GCGTC-ATATACGCAGATACGCATCTTATTTGGAGCTCTG
gi|111577 : TCAAT-GATAAATGAAACCTCTTAGCAACATTGTTT-ATTAAATACACTGACTGGATAACCATAATAACTGG---TAGAAT--TTATCACTGAAGCCATTTGAGTTGAAACCATTCAGC--TATTTT--T--ATT----T---A----------TGCCAACAAG--T--C-AATAAATTAGTGCATTGAAGA--T--ATATTTCAGAGAATGT-AAAC--A---AATTT----ATGCAT---ATAAA--AAATGACTTAAGCATAAAACTCG--TTGCTT-AA--GC------G-T-AATTAATGTGCACCTAA-AATAACTTT-GAT-GT--GAAT-CCC-CCA-A-TT--TC-----------AAT-GCATC-ATATATGCAAATATGCAGCTTA--TGGGGCTCTG
gi|111578 : AAAATTAAGCATCTTAGCGACATTGTTT-ATTAATTACACAGACTGGATTACCATTATAATCAG---TAAAAA--TTATCACTAAAGCAAGTTAAATTGAAACCATTCAGC--TT--TTTCT--ATT----T---C----------CACAGATAAC--T--C-AAGAAATTAG-----TAAAGC--TCAAT-TTTCAGAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAAA--AATTGATTTCAGCGTAAAACTAG--TTGCTT-AT--GC------G-T--ATTGTTTCGCACCTAA-AATTAATTT-GAT-GC--ATAT-CCA-CCA-ATTT--TT-----------AAT-GCATC-AT--------ATACACATCTTATTTGGGGCTCTG
gi|111576 : AAATTAAGCATCTAAGCGACACTGTCT-ATTAATTACACAGACTGGATTACCATTATAATCGT---TAACAG--TTATCATTCAAAC-AGTTGAATTGAAACAATTCAGC--TA--TT--TTTATT----T---A----------CGCGGATAAG--T--C-AAGAAATT--TGTAA--AAGC--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAA--AATGGATTTTA------AACTCA--TTGCTT-AT--GT------G-T-AATTGATACGCACGTAA-AACAAATTT-GAT-GT--GTAT-CCA-CCA-ATTT--TT-----------AAT-GCATC-ATATACGCAAAAACACATCTTATCTGGGACTCTG
gi|111579 : ctgccgggaacccagccgtgtttaaatatcatgcacaatgatAAATCAAACCTCTTAGCAACATTGTTT-TTTAATTACACAGACTGGATTATCATAATAACTGG---TAAAAT--TTATCACTGAAGCCAGTTGAATTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------CGTGGACAAG--T--C-AATAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATTAA--AATTGATTTTAGTGTAAAACTTG--TTGCTT-A----------------------A-GCATGTAA-AACAGCTCT-GAT-GC--ATAT-CCA-TCA-ATTT--TT-----------AAT-GCATC-ATATATGCAAAT
gi|111580 : TTAGCGGCATTGTTTTATTAATT-TGCAGACTGGGTTACAATTATAACCGG---CAAAAT--TTATCGCTGAAGTGAGTTGAATTGAAACCATTCAGC--TA---T--T--ATTTTTCT---A----------CGCCGATAAGGAG--T-CAATAATTAGTGCAATGAAGA--T
gi|111582 : aaacattTTAGCGACATTGTTT-ATTACTTGCACAGACTGGATGACCGT
gi|111581 : CATTGTTT-ATTAATAGCACAGACTGGATTACCATTATAATCGG---TAAAAC--TTATCACTGAAGCGAGTTAAATTGAAACCATTCAGC--TA--TT--TTTATT----TTATA----------TGCTGATAAG--T--C-AGAAG-TTAGTA-----AAGC--TCAAT-CTTCAGAGAATGT-TAGT--T---TATTT----ACGCAT---ATAAA--AATTGATTTTAGTGTAAAACTCT--TTGCTT-AT--GC------G-T-AATTGATAAGCACGTAA-AATAAATCT-GAT-TC--GAAT-CCA-CCA-ATTT--TT-----------AAT-GCGTC-ATATACGT---T-----TCTTATCTGGGGCTCTG
gi|111583 : aaatcagcatTT-ATTAATTACATGTACTGCATTACCATTTTAACAAG---TA-AAT--ATTTCATTGAAGTGAGATAAACTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------TGTGAACAAG--T--T-GAGAAATTAGTGCAAAGAAGA--TCTAT-TTTTAGAGAATGT-GAAC--T---TATTT----ACGCAT---ACAAA--AATTGATTTTAGCATATAACTCA--TTGCTT-AT--GC------C-T-TATTGATATGCATGTTA-AAC------------C--A------------ATTT--TT-----------AAT-GCATC-ATATATGCAATAACACATCCTATCTTGGTCTCT
gi|111585 : TT-ATTAATTACACAGACTGGATTACCATTATAACTTGAACTA-AATAAACATCATTGAAGCAAGCTGAATTGAAACCATTCAGCAATA--TT--T--ATT----T---A----------TGCAGATAAG--T--C-AA
gi|111584 : TAATT--ACAGACTGGATTACCATTGTAACTGG---TAAAAT--TTATCGCTGAAGCGAGTTGAAATGAACCCATTCAGC--TA--TTTAT--ATT----T---A----------TGCGGATAAG--T--C-AAGAAATTAGTAAAATGAAAATTTCAAT-TTTCAGAGAATGT-CAAC--CCAATATTT----ATGCAT---AT-TA--AATTGATTTTAACGTAAAACTTG--TTGCTT-AA--GC------G-T-A
gi|111586 : ttaaCCATTATAATCGG---TAAAAT--TTATCACGGAAGTGATTTGAATTGAAAACATTCAG---TA--TT--TT-ATT----T---AGTATAATGTCCGCCGCTAAA--T--C-TAGAAATTAGTGCCATGAAAA--TTGAT-TTTCAGAGAATGT-AAAT--T---TATTT----ATGAAT---TTAAA--AATTGATTTTAACGTAAAACTCG--TTTTCT-AT--GC------A-T-GATTGATATGCACGTAA-AACCAACTT-GAT-GCATATAT-CCA-CCA-ATTT--TT-----------TAT-GCATC-ATAT--GCAGATAAACTTTTTATCTGGGGCTC
gi|111587 : AAGTGAATTTAACTGAAACAATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATAAG--T--T-AAAAAATTAGTCCAATGAAGA--TAGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGCATAAAACTCG--TTGCTT-CT--GC------G-T-AATTGATACGCACGTAA-ATCGAGTCT-GGT-GC--GTAT-CCA-CAA-A-TT--TT-----------AAT-GCGTC-ATATACGCAGATACGCATCTTATCTGGAGCTCTG
gi|111588 : CCATTCAG-----------T--ATT----T---A----------TGTGGATAAG--T--C-CAGAAATTAGTGCAATGAAGA--TGGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAA--AAGTGATTTTAGAGTAAAACTCG--TTGCCT-AT--GC------G-T-CACTGATATGCACATTA-AACAAATTT-GAT-GT--GAAT-CCA-CCA-ATTT--TT-----------A-----------ATACGCAGATACACATCTTATCTGGGACTCTG
gi|111589 : C--TA--TT--T--ATT----T---A----------CACGGATAAG--T--T-AAAAAATTAGTCCAATGAAGA--TTGAT-TTTCTGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGA--AATTGATTTTAGCGTAAAACTCG--TTGCTT-AT--GC------G-T-AATTGATACACACATAA-AACAAATCT-GGT-GT--GTAT-CCA-CAA-A-TT--TT-----------AAT-GCGTC-ATATACGCAGATATGCATCTTATCTGGAGCTCTG
gi|111590 : A--TCGAA-ATACAGGAAATGTGAAACAGC---TGTTTGGATACGCATTGTATTAA--CAATG-TTTT-GCGTGAAAGTAAAATTATTT-----GC------G-T-AATGGGTACGCTTAAAA-AACAAAATT-GTTTGC--GTTTTCCA-TGA-ATTTATTTG----------AAT-G-----AAATACGCAAATACGCAGCTTATCTGGAGCACTG
gi|111594 : --T---TATTT----ATGCAG---ATAAGTCAATTGATTCACACGTAAAACAAA--TT--TT-AT--GC------G-T-A
gi|111591 : AT---ATAGA--AATTGATTTAAGCGTAAAACATG--TTGCTT-AT--GC------G-T-AATTGATATGCACGTAA-AACAAATCT-GGT-Gtccaccaatttttaatgcatcatatatgcagatacgcaactaatatggggctctg
gi|111593 : AAATTCAA-TTGTTT-AT--GC------G-T-A-CTGGTACGCAC----------ATTT-ATT-----ATTT-TCA-ATG-CTTT--TTTTGTCAATTCCAAT-GC-TT-ATTTACGCAAATACGCACCTTATCTGGAGCACTGtg
gi|111594 : --TTATTT-AT--GCAGATAAG-TCAATTGATTCACACGTAA-AACAAATTT-TAT-GC--GTAT-CCA-CCA-ATTT--TT-----------AAT-GCATC-ATATATGCAGATACGCAACTAATATGGGGCTCTG
gi|111571 : TGCGT-ATCTGC------G-T-ATATGAT--GCAT-TAA-AA---ATTT-G-T-GG--ATAC-GTATCAG-ATTT--TT-----------T-T-TTGGC-ATAT---CAAATACGCAT
gi|111596 : tttcttcaaattacaaaataaaattgtcatggcgtaacagccatttatgctttaacccgacacatgagtgtatactatataaaaataacctcaatatgttgttgaataggattttcaaccagcgatatacctaaaatattgaaacagctctgggaattacagttatattgcccgaacactcagctttccaaagctggtatcccgtcaagaaaaaaatcaaacaacttagcaacattgtttattaattgcacagactgggttaccattataacaggtaaaatttatcactgaagtgagttgaaaccattcagctatttatttaagctaaaaaaattagtgcaatgaagatcgattttcagagaatgtaaacttatttacgcatatagaaattgattttagcgtaaaactcgttgcttT-GT--GC------G-T-AATTGATATGCATGGAA-AAT-ATTTT-CAT-GC--GT-T-TCT-TAGCACTT--TT-----------GCA-GCGTC-AGTGACGCAGATAGGCAGCTTATCTGGGGCACTGtcttatctggagctctg
gi|111595 : T-AT--AC------GGT-AATTGATATGCATGTAA-AACAAAATT-GAT-GC--GTAT-
gi|111597 : T--GC------G-T-AATGGGTACGCA--TAATAACAAAATT-GGTTGC--GTTTTCCA-AAC-ATAT----------------AT-GAGTA-GAATATGTAAATACGCATCTTGTCTTGAGCACTG
gi|111598 : T--GC------A-T-AAC-GGTACG-AT-TAA-AAAAAAATT-GTTTAC--GTTTTCCA-TGA-ATTTA-TT-------------T-GGGTG-AAATATGCAGATACGCATCTTATCTGGAGCACTG
gi|111599 : TCGGTACGCATGTAA-A-TAAATTTCAAT-GT--ATTT-CCC-CCC-ATTT--TT-----------A-T-GGGTA-AAATATGCAGAAACACATCTTATCTGGCACTCTG
gi|111600 : TACGCAC-TAA-AAGAAAATT-GTTTGC--GTTTTCCA-CAA-ATTT----------------AT-GTGTG-AAATAGGCAAATATGCAGTTTATCTGGAGCACTG
gi|111603 : TT--TT-----------AAT--TGCCTAAATACGCAAATAGGCATCTTATCTAGAGCTCTG
gi|111602 : TT--TT-----------AATTGTGTA-A-ATACGCAAATACACACCTCATCTGGAGCTCTG
gi|111592 : TT--TC-----------AAT-GC-TT-ATTTACGCAAATACGCACCTTATCTGGAGCACTG
gi|111601 : aaattcaattgtttatgcataccggtacgcatattgattattttcaatgcttttttgtcaaTT--TC-----------AAT-GC-TT-ATTTACGCAAATACACACCTTATCTGGAGCACTG
Alignments
lowQualScore : 1111 11
lowQualScore : 9 4 1 0 5 66 0000 66 4 4 0 2 0 333 4 0 1 22 22 55 33 4444 333 88888888888 333 3333 22 2 2 22 333 4444 333 55 1 444444 1 1 0 1 1 1 5 22 4 1 1 2 33 1 2 2 1 0 1
lowQualScore : . . . . . .. .... .. . . . . . ... . . . .. .. .. .. .... ... ........... ... .... .. . . .. ... .... ... .. . ...... . . . . . . . .. . . . . .. . . . . . .
lowQualScore : 7 4 1 9 0 99 6666 11 0 0 3 2 9 999 4 5 8 88 88 55 00 2222 555 88888888888 555 7777 88 1 1 99 777 5555 555 99 6 333333 5 5 2 4 4 6 7 00 4 5 0 6 33 4 8 7 4 1 4
consensus : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
Reference ( family-578 ) : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111567 : TTTCTTCAAATTACAATATAA-AATTGTCATGGCGTGACAGTCATTTATGATTTAACCCGACGAGCGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTATAACCAGTGATATACCTAAAATATTGAAACA----GCTTTGGGAATTACAGGTATCCCGCCGGTACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCGAGCAACTTGGCGACATTGTTT-GTTAATTGCACAGACTGGGTTACCATTATAACTGG---TAGA-ATTTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T-AAAAAATTAGTGGAATGAAGA--TCGAT-TTTCAGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--ATAT-CC-ACAGATTT--TT-AAT-GTGTCATATACGCAAAT-ACGCATCTTATCTAGAGCTCTG
gi|111568 : TTTCTTTAAATTACAAAAACATAATTGTCATGGTATGACAGTCATTTATGATTTACCCCAAAGAGTAAGCATTTATTATATAAAAA-TAACCTCAATAT--GTTGTTGGATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTAGGAATAACAGGTATCCCGCAGGAACACTCAGC--TTTCCAAAGTTAGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATCGCACTGACTGGGTAACCATCATAACCGG---TAAA-ATTTATAGCTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T---AAAATTAGTGCAATTAAGA--TAGAT-TTTCACAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGTGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATATGCAAGTAA-AACAAATCT-GGT-GC--ATAT-TC-ACAAAATT--TT-AAT-GCATCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111569 : TTTCTTCAAATTACAAAATAA-AATTGTCATGGCATGACAGTCATTTATGATTTACTCCGATGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTT---GAATAGGATTTTCAAACAGTGATATACCTAAAATATTGAAACA----GCTCTGGTTATTACAGGTATCCCACCGGAACACTCATC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATTGAGCAACTTAGTGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATATTTGG---TAAA-ATTTATCACTGAAGCAAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------CGCGGATA---AGTTAT-AAAAAATTAGTACAATGAAGA--TCGAT-TTTCAGAGAATGC-AAAC--T---TATTT----ACAC-----ATAGAAATTGATTTTAGCGTAAAACTTG--TTGCTTAATGT------G-T-AATTGATACGCACATAA-AACAAATCT-TGT-GT--GTAT-CC-ACTAATTT--TT-AAT-GCGTTGTACACGCAGA--ACGCATCTTATCTGGAGCTCTG
gi|111570 : TTTGTTCAAATTACAATA-AA-AATTGTCATGACGTGACAGTCATTTATGATTTACCCCGATGAGTGAGTGCATATTATATAAAAA-TAACTTCATTAT--GTTGTTAAATAGGACTTTTAACCAGCAATATACCCAAAAAATTGAAATA----GCGCTGGGAATTACATGTATCCCGCTGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-TAAAAATCAAGCAACTTAGCAACGTTGTTT-ATTAACTGCATAGACTGGGTTACCATTATAACCAG---AAAA-ATTTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------TGCGGATA---ACT--T-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCAGAGAATGT-GAAC--T---TA-------ACGCAT---AAAGAAATTGATTTAAGTGTAAAACTTG--TTGCTT-ATGT------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATAAGCAGAT-ACGCATCATATCTGGAGCTCTG
gi|111571 : TTTCTTCAAATTACAAAATAA-AATTGTCATGGCGTAACAGCCATTTATGCTTTAACCCGACACATGAGTGTATACTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGTTATATTGCCCGAACACTCAGC--TTTCCAAAGCTGGTATCCCGT-CAAGAAAAAAATCAAACAACTTAGCAACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACAGG---TAAA-ATTTATCACTGAAGTGAG-----TTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------AGC---TA----------AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-ATTTGATATGC-CA-AA-AAAAAATCT-GAT-AC--GTAT-CC-ACAAATTT--TT-AAT-GCATCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111572 : TTTCTTCAAATTACAAAATAA-AAATGTCTTGGCGTG----TCA--------------------GTGA-----TATTGTATAAAAA-TAACCTCAATA--------------GGATTTATAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCTACTGGTACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCGAACAACTTAGCGACATTGTTT-ATTAATTGTACAGCCTGGGTTACCATAATAAACAG---TAGA-ATTTATCACTGAAGCAAGTTTAATTGAAACTATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--TAAAAAAATTAGTGCAATGAAGA--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACACAT---GTAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CT-GAAAATTT--TT-AAT-GCGTCAAATACGCAGAT-ACGCATCTTATCTGGAGCACTG
gi|111573 : TTTCTTCAAATTACAAAAAAA-AATTGCCATGGCGTGACAGCCATTTATGATTTACCCTAATGAGTGAGCGCATATTATATAAAAAATAACCTCAATAT--GTTGTTAAATAGGATTTTCAAGCAGCTATATACCTAAAATACTGAAACATGCAGCTCTGGGAATTACAGGTACCCCGCCGGAACATTCAGC--TTTCCAAAGTTGGTGTCTCAT-CAAG-AAAAAATCAAGCAACTTAGCAATAGTGTTT-ATCAATTGCATAGACTGGGTTACCATTATAACCGG---TTAA-ATTTATCACTTAAAC
gi|111574 : TTTCTTCAAATTACAAAA-AA-AATTGTCATGGCGTGACAGTCATTTATGATTTAATCCGACGACTGAGCGTAT
gi|111575 : TTTTCGAATTACAAAAAAA-AAATGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAA--TAACCTCAATATATGTTGTTGAATAGGAATTTCAACCAGCGATTTACCTAAAATATTGAAACA----GCTCTGAGTATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTCGGTGTCCCTT-CCAG-AAAAAATCAAGCAATTTAGAGACATTGTT--ATTAATTGCATAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCCAGTTTAATTGAA-CAAATCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AAT--A-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCTGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCTTAAGACTCT--TTACTT-ATGC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACAAA-TT--TG-AAT-GCGTCATATACGCAGAT-ACGCATCTTATTTGGAGCTCTG
gi|111576 : CTGCCGGGA-ACCCAGCCGTGTTTAAA-----TATCATGCACAAT-GATAAATTAAGCATCTAAGCGACACTGTCT-ATTAATTACACAGACTGGATTACCATTATAATCGT---TAAC-AGTTATCATTCAAAC-AGTTGAATTGAAACAATTCAGC--TA--TT--TTTATT----T---A----------CGCGGATA---AGT--C-AAGAAATT--TGTAA--AAGC--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAAAATGGATTTTA------AACTCA--TTGCTT-ATGT------G-T-AATTGATACGCACGTAA-AACAAATTT-GAT-GT--GTAT-CC-ACCAATTT--TT-AAT-GCATCATATACGCAAAA-ACACATCTTATCTGGGACTCTG
gi|111577 : T-CAAT-GATAAATGAAACCTCTTAGCAACATTGTTT-ATTAAATACACTGACTGGATAACCATAATAACTGG---TAGA-ATTTATCACTGAAGCCATTTGAGTTGAAACCATTCAGC--TATTTT--T--ATT----T---A----------TGCCAACA---AGT--C-AATAAATTAGTGCATTGAAGA--T--ATATTTCAGAGAATGT-AAAC--A---AATTT----ATGCAT---ATAAAAAATGACTTAAGCATAAAACTCG--TTGCTT-AAGC------G-T-AATTAATGTGCACCTAA-AATAACTTT-GAT-GT--GAAT-CC-CCCAA-TT--TC-AAT-GCATCATATATGCAAAT-ATGCAGCTTA--TGGGGCTCTG
gi|111578 : AAAATTAAGCATCTTAGCGACATTGTTT-ATTAATTACACAGACTGGATTACCATTATAATCAG---TAAA-AATTATCACTAAAGCAAGTTAAATTGAAACCATTCAGC--TT--TTTCT--ATT----T---C----------CACAGATA---ACT--C-AAGAAATTAG-----TAAAGC--TCAAT-TTTCAGAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAAAAATTGATTTCAGCGTAAAACTAG--TTGCTT-ATGC------G-T--ATTGTTTCGCACCTAA-AATTAATTT-GAT-GC--ATAT-CC-ACCAATTT--TT-AAT-GCATCAT--------AT-ACACATCTTATTTGGGGCTCTG
gi|111579 : AAATCAAACCTCTTAGCAACATTGTTT-TTTAATTACACAGACTGGATTATCATAATAACTGG---TAAA-ATTTATCACTGAAGCCAGTTGAATTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------CGTGGACA---AGT--C-AATAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATTAAAATTGATTTTAGTGTAAAACTTG--TTGCTT-A--------------------A-GCATGTAA-AACAGCTCT-GAT-GC--ATAT-CC-ATCAATTT--TT-AAT-GCATCATATATGCAAAT-
gi|111580 : AAACATTTTAGCGGCATTGTTTTATTAATT-TGCAGACTGGGTTACAATTATAACCGG---CAAA-ATTTATCGCTGAAGTGAGTTGAATTGAAACCATTCAGC--TA---T--T--ATTTTTCT---A----------CGCCGATAAGGAGT--C--AATAATTAGTGCAATGAAGA--T
gi|111581 : AAATCAGCATCATTGTTT-ATTAATAGCACAGACTGGATTACCATTATAATCGG---TAAA-ACTTATCACTGAAGCGAGTTAAATTGAAACCATTCAGC--TA--TT--TTTATT----TTATA----------TGCTGATA---AGT--C-AGAAG-TTAGTA-----AAGC--TCAAT-CTTCAGAGAATGT-TAGT--T---TATTT----ACGCAT---ATAAAAATTGATTTTAGTGTAAAACTCT--TTGCTT-ATGC------G-T-AATTGATAAGCACGTAA-AATAAATCT-GAT-TC--GAAT-CC-ACCAATTT--TT-AAT-GCGTCATATACGT---T------TCTTATCTGGGGCTCTG
gi|111582 : TTAGCGACATTGTTT-ATTACTTGCACAGACTGGATGACCGT
gi|111583 : TT-ATTAATTACATGTACTGCATTACCATTTTAACAAG---TAAATATTT--CATTGAAGTGAGATAAACTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------TGTGAACA---AGT--T-GAGAAATTAGTGCAAAGAAGA--TCTAT-TTTTAGAGAATGT-GAAC--T---TATTT----ACGCAT---ACAAAAATTGATTTTAGCATATAACTCA--TTGCTT-ATGC------C-T-TATTGATATGCATGTTA-A-------------------------ACCAATTT--TT-AAT-GCATCATATATGCA-ATAACACATCCTATCTTGGTCTCT
gi|111584 : TT-AATAATT--ACAGACTGGATTACCATTGTAACTGG---TAAA-ATTTATCGCTGAAGCGAGTTGAAATGAACCCATTCAGC--TA--TTTAT--ATT----T---A----------TGCGGATA---AGT--C-AAGAAATTAGTAAAATGAAAATTTCAAT-TTTCAGAGAATGT-CAAC--CCAATATTT----ATGCAT---AT-TAAATTGATTTTAACGTAAAACTTG--TTGCTT-AAGC------G-T-A
gi|111585 : TT-ATTAATTACACAGACTGGATTACCATTATAACTTGAACTAAATAAACATCATTGAAGCAAGCTGAATTGAAACCATTCAGCAATA--TT--T--ATT----T---A----------TGCAGATA---AGT--C-AA
gi|111586 : CCATTATAATCGG---TAAA-ATTTATCACGGAAGTGATTTGAATTGAAAACATTCAG---TA--TT--TT-ATT----T---AGTATAATGTCCGCCGCTA---AAT--C-TAGAAATTAGTGCCATGAAAA--TTGAT-TTTCAGAGAATGT-AAAT--T---TATTT----ATGAAT---TTAAAAATTGATTTTAACGTAAAACTCG--TTTTCT-ATGC------A-T-GATTGATATGCACGTAA-AACCAACTT-GAT-GCATATAT-CC-ACCAATTT--TT-TAT-GCATCATAT--GCAGAT-AAACTTTTTATCTGGGGCTC
gi|111587 : AAGTGAATTTAACTGAAACAATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T-AAAAAATTAGTCCAATGAAGA--TAGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCATAAAACTCG--TTGCTT-CTGC------G-T-AATTGATACGCACGTAA-ATCGAGTCT-GGT-GC--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111588 : CCATTCAG-----------T--ATT----T---A----------TGTGGATA---AGT--C-CAGAAATTAGTGCAATGAAGA--TGGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAAAAGTGATTTTAGAGTAAAACTCG--TTGCCT-ATGC------G-T-CACTGATATGCACATTA-AACAAATTT-GAT-GT--GAAT-CC-ACCAATTT--TT-A----------ATACGCAGAT-ACACATCTTATCTGGGACTCTG
gi|111589 : C--TA--TT--T--ATT----T---A----------CACGGATA---AGT--T-AAAAAATTAGTCCAATGAAGA--TTGAT-TTTCTGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACACACATAA-AACAAATCT-GGT-GT--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATACGCAGAT-ATGCATCTTATCTGGAGCTCTG
gi|111590 : A--TCGAA-ATACAGGAAATGTGAAACAGC---TGTTTGGATACGCATTGTATTAACAATG-TTTT-GCGTGAAAGTAAAATTATTT---GC------G-T-AATGGGTACGCTTAAAA-AACAAAATT-GTTTGC--GTTTTCC-ATGAATTTATTTGAAT-G----AAATACGCAAAT-ACGCAGCTTATCTGGAGCACTG
gi|111591 : AT---ATAGAAATTGATTTAAGCGTAAAACATG--TTGCTT-ATGC------G-T-AATTGATATGCACGTAA-AACAAATCT-GGT-GT--G
gi|111592 : AAATTCAA-TTGTTT-ATGC------A-T-A-CCGGTACGCATATTG-ATTATTTTC-AAT-GC--TTTT-TT-GTCAATTT--C--AAT-GC-TTATTTACGCAAAT-ACGCACCTTATCTGGAGCACTG
gi|111593 : AAATTCAA-TTGTTT-ATGC------G-T-A-CTGGTACGCACATTT-ATTATTTTC-AAT-GC--TTTT-TTTGTCAATTC--C--AAT-GC-TTATTTACGCAAAT-ACGCACCTTATCTGGAGCACTG
gi|111594 : --TTATTT-ATGCAGATAAG-TCAATTGATTCACACGTAA-AACAAATTT-TAT-GC--GTAT-CC-ACCAATTT--TT-AAT-GCATCATATATGCAGAT-ACGCAACTAATATGGGGCTCTG
gi|111595 : T-ATAC------GGT-AATTGATATGCATGTAA-AACAAAATT-GAT-GC--GTAT-
gi|111596 : T-GTGC------G-T-AATTGATATGCATGGAA-AATAT-TTT-CAT-GC--GTTT-CT-TAGCACTT--TT-GCA-GCGTCAGTGACGCAGAT-AGGCAGCTTATCTGGGGCACTG
gi|111597 : TGC------G-T-AATGGGTACGCA--TAATAACAAAATT-GGTTGC--GTTT-TC--CAAACAT--AT-A-T-GAGTAGAATATGTAAAT-ACGCATCTTGTCTTGAGCACTG
gi|111598 : TGC------A-T-AAC-GGTACG-AT-TAA-AAAAAAATT-GTTTAC--GTTTTCC-ATGAATTTA-TT---T-GGGTGAAATATGCAGAT-ACGCATCTTATCTGGAGCACTG
gi|111599 : TCGGTACGCATGTAA-A-TAAATTTCAAT-GT--ATTT-CC-CCCCATTT--TT-A-T-GGGTAAAATATGCAGAA-ACACATCTTATCTGGCACTCTG
gi|111600 : TACGCAC-TAA-AAGAAAATT-GTTTGC--GTTTTCC-ACAAATTT------AT-GTGTGAAATAGGCAAAT-ATGCAGTTTATCTGGAGCACTG
gi|111601 : TT--TC-AAT-GC-TTATTTACGCAAAT-ACACACCTTATCTGGAGCACTG
gi|111602 : aaTT--TT-AATTGTGTAA-ATACGCAAAT-ACACACCTCATCTGGAGCTCTG
gi|111603 : TT--TT-AATTGCCTAA-ATACGCAAAT-AGGCATCTTATCTAGAGCTCTG
Alignments
lowQualScore : 1111 11
lowQualScore : 9 4 1 0 5 66 0000 66 4 4 0 2 0 333 4 0 1 22 22 55 33 4444 333 88888888888 333 3333 22 2 2 22 333 4444 333 55 1 444444 1 1 0 1 1 1 5 22 4 1 1 2 33 1 2 2 1 0 1
lowQualScore : . . . . . .. .... .. . . . . . ... . . . .. .. .. .. .... ... ........... ... .... .. . . .. ... .... ... .. . ...... . . . . . . . .. . . . . .. . . . . . .
lowQualScore : 7 4 1 9 0 99 6666 11 0 0 3 2 9 999 4 5 8 88 88 55 00 2222 555 88888888888 555 7777 88 1 1 99 777 5555 555 99 6 333333 5 5 2 4 4 6 7 00 4 5 0 6 33 4 8 7 4 1 4
consensus : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
Reference ( family-578 ) : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111567 : TTTCTTCAAATTACAATATAA-AATTGTCATGGCGTGACAGTCATTTATGATTTAACCCGACGAGCGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTATAACCAGTGATATACCTAAAATATTGAAACA----GCTTTGGGAATTACAGGTATCCCGCCGGTACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCGAGCAACTTGGCGACATTGTTT-GTTAATTGCACAGACTGGGTTACCATTATAACTGG---TAGA-ATTTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T-AAAAAATTAGTGGAATGAAGA--TCGAT-TTTCAGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--ATAT-CC-ACAGATTT--TT-AAT-GTGTCATATACGCAAAT-ACGCATCTTATCTAGAGCTCTG
gi|111568 : TTTCTTTAAATTACAAAAACATAATTGTCATGGTATGACAGTCATTTATGATTTACCCCAAAGAGTAAGCATTTATTATATAAAAA-TAACCTCAATAT--GTTGTTGGATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTAGGAATAACAGGTATCCCGCAGGAACACTCAGC--TTTCCAAAGTTAGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATCGCACTGACTGGGTAACCATCATAACCGG---TAAA-ATTTATAGCTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T---AAAATTAGTGCAATTAAGA--TAGAT-TTTCACAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGTGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATATGCAAGTAA-AACAAATCT-GGT-GC--ATAT-TC-ACAAAATT--TT-AAT-GCATCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111569 : TTTCTTCAAATTACAAAATAA-AATTGTCATGGCATGACAGTCATTTATGATTTACTCCGATGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTT---GAATAGGATTTTCAAACAGTGATATACCTAAAATATTGAAACA----GCTCTGGTTATTACAGGTATCCCACCGGAACACTCATC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATTGAGCAACTTAGTGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATATTTGG---TAAA-ATTTATCACTGAAGCAAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------CGCGGATA---AGTTAT-AAAAAATTAGTACAATGAAGA--TCGAT-TTTCAGAGAATGC-AAAC--T---TATTT----ACAC-----ATAGAAATTGATTTTAGCGTAAAACTTG--TTGCTTAATGT------G-T-AATTGATACGCACATAA-AACAAATCT-TGT-GT--GTAT-CC-ACTAATTT--TT-AAT-GCGTTGTACACGCAGA--ACGCATCTTATCTGGAGCTCTG
gi|111570 : TTTGTTCAAATTACAATA-AA-AATTGTCATGACGTGACAGTCATTTATGATTTACCCCGATGAGTGAGTGCATATTATATAAAAA-TAACTTCATTAT--GTTGTTAAATAGGACTTTTAACCAGCAATATACCCAAAAAATTGAAATA----GCGCTGGGAATTACATGTATCCCGCTGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-TAAAAATCAAGCAACTTAGCAACGTTGTTT-ATTAACTGCATAGACTGGGTTACCATTATAACCAG---AAAA-ATTTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------TGCGGATA---ACT--T-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCAGAGAATGT-GAAC--T---TA-------ACGCAT---AAAGAAATTGATTTAAGTGTAAAACTTG--TTGCTT-ATGT------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATAAGCAGAT-ACGCATCATATCTGGAGCTCTG
gi|111571 : TTTCTTCAAATTACAAAATAA-AATTGTCATGGCGTAACAGCCATTTATGCTTTAACCCGACACATGAGTGTATACTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGTTATATTGCCCGAACACTCAGC--TTTCCAAAGCTGGTATCCCGT-CAAGAAAAAAATCAAACAACTTAGCAACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACAGG---TAAA-ATTTATCACTGAAGTGAG-----TTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------AGC---TA----------AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-ATTTGATATGC-CA-AA-AAAAAATCT-GAT-AC--GTAT-CC-ACAAATTT--TT-AAT-GCATCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111572 : TTTCTTCAAATTACAAAATAA-AAATGTCTTGGCGTG----TCA--------------------GTGA-----TATTGTATAAAAA-TAACCTCAATA--------------GGATTTATAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCTACTGGTACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCGAACAACTTAGCGACATTGTTT-ATTAATTGTACAGCCTGGGTTACCATAATAAACAG---TAGA-ATTTATCACTGAAGCAAGTTTAATTGAAACTATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--TAAAAAAATTAGTGCAATGAAGA--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACACAT---GTAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CT-GAAAATTT--TT-AAT-GCGTCAAATACGCAGAT-ACGCATCTTATCTGGAGCACTG
gi|111573 : TTTCTTCAAATTACAAAAAAA-AATTGCCATGGCGTGACAGCCATTTATGATTTACCCTAATGAGTGAGCGCATATTATATAAAAAATAACCTCAATAT--GTTGTTAAATAGGATTTTCAAGCAGCTATATACCTAAAATACTGAAACATGCAGCTCTGGGAATTACAGGTACCCCGCCGGAACATTCAGC--TTTCCAAAGTTGGTGTCTCAT-CAAG-AAAAAATCAAGCAACTTAGCAATAGTGTTT-ATCAATTGCATAGACTGGGTTACCATTATAACCGG---TTAA-ATTTATCACTTAAAC
gi|111574 : TTTCTTCAAATTACAAAA-AA-AATTGTCATGGCGTGACAGTCATTTATGATTTAATCCGACGACTGAGCGTAT
gi|111575 : TTTTCGAATTACAAAAAAA-AAATGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAA--TAACCTCAATATATGTTGTTGAATAGGAATTTCAACCAGCGATTTACCTAAAATATTGAAACA----GCTCTGAGTATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTCGGTGTCCCTT-CCAG-AAAAAATCAAGCAATTTAGAGACATTGTT--ATTAATTGCATAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCCAGTTTAATTGAA-CAAATCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AAT--A-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCTGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCTTAAGACTCT--TTACTT-ATGC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACAAA-TT--TG-AAT-GCGTCATATACGCAGAT-ACGCATCTTATTTGGAGCTCTG
gi|111576 : CTGCCGGGA-ACCCAGCCGTGTTTAAA-----TATCATGCACAAT-GATAAATTAAGCATCTAAGCGACACTGTCT-ATTAATTACACAGACTGGATTACCATTATAATCGT---TAAC-AGTTATCATTCAAAC-AGTTGAATTGAAACAATTCAGC--TA--TT--TTTATT----T---A----------CGCGGATA---AGT--C-AAGAAATT--TGTAA--AAGC--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAAAATGGATTTTA------AACTCA--TTGCTT-ATGT------G-T-AATTGATACGCACGTAA-AACAAATTT-GAT-GT--GTAT-CC-ACCAATTT--TT-AAT-GCATCATATACGCAAAA-ACACATCTTATCTGGGACTCTG
gi|111577 : T-CAAT-GATAAATGAAACCTCTTAGCAACATTGTTT-ATTAAATACACTGACTGGATAACCATAATAACTGG---TAGA-ATTTATCACTGAAGCCATTTGAGTTGAAACCATTCAGC--TATTTT--T--ATT----T---A----------TGCCAACA---AGT--C-AATAAATTAGTGCATTGAAGA--T--ATATTTCAGAGAATGT-AAAC--A---AATTT----ATGCAT---ATAAAAAATGACTTAAGCATAAAACTCG--TTGCTT-AAGC------G-T-AATTAATGTGCACCTAA-AATAACTTT-GAT-GT--GAAT-CC-CCCAA-TT--TC-AAT-GCATCATATATGCAAAT-ATGCAGCTTA--TGGGGCTCTG
gi|111578 : AAAATTAAGCATCTTAGCGACATTGTTT-ATTAATTACACAGACTGGATTACCATTATAATCAG---TAAA-AATTATCACTAAAGCAAGTTAAATTGAAACCATTCAGC--TT--TTTCT--ATT----T---C----------CACAGATA---ACT--C-AAGAAATTAG-----TAAAGC--TCAAT-TTTCAGAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAAAAATTGATTTCAGCGTAAAACTAG--TTGCTT-ATGC------G-T--ATTGTTTCGCACCTAA-AATTAATTT-GAT-GC--ATAT-CC-ACCAATTT--TT-AAT-GCATCAT--------AT-ACACATCTTATTTGGGGCTCTG
gi|111579 : AAATCAAACCTCTTAGCAACATTGTTT-TTTAATTACACAGACTGGATTATCATAATAACTGG---TAAA-ATTTATCACTGAAGCCAGTTGAATTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------CGTGGACA---AGT--C-AATAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATTAAAATTGATTTTAGTGTAAAACTTG--TTGCTT-A--------------------A-GCATGTAA-AACAGCTCT-GAT-GC--ATAT-CC-ATCAATTT--TT-AAT-GCATCATATATGCAAAT-
gi|111580 : AAACATTTTAGCGGCATTGTTTTATTAATT-TGCAGACTGGGTTACAATTATAACCGG---CAAA-ATTTATCGCTGAAGTGAGTTGAATTGAAACCATTCAGC--TA---T--T--ATTTTTCT---A----------CGCCGATAAGGAGT--C--AATAATTAGTGCAATGAAGA--T
gi|111581 : AAATCAGCATCATTGTTT-ATTAATAGCACAGACTGGATTACCATTATAATCGG---TAAA-ACTTATCACTGAAGCGAGTTAAATTGAAACCATTCAGC--TA--TT--TTTATT----TTATA----------TGCTGATA---AGT--C-AGAAG-TTAGTA-----AAGC--TCAAT-CTTCAGAGAATGT-TAGT--T---TATTT----ACGCAT---ATAAAAATTGATTTTAGTGTAAAACTCT--TTGCTT-ATGC------G-T-AATTGATAAGCACGTAA-AATAAATCT-GAT-TC--GAAT-CC-ACCAATTT--TT-AAT-GCGTCATATACGT---T------TCTTATCTGGGGCTCTG
gi|111582 : TTAGCGACATTGTTT-ATTACTTGCACAGACTGGATGACCGT
gi|111583 : TT-ATTAATTACATGTACTGCATTACCATTTTAACAAG---TAAATATTT--CATTGAAGTGAGATAAACTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------TGTGAACA---AGT--T-GAGAAATTAGTGCAAAGAAGA--TCTAT-TTTTAGAGAATGT-GAAC--T---TATTT----ACGCAT---ACAAAAATTGATTTTAGCATATAACTCA--TTGCTT-ATGC------C-T-TATTGATATGCATGTTA-A-------------------------ACCAATTT--TT-AAT-GCATCATATATGCA-ATAACACATCCTATCTTGGTCTCT
gi|111584 : TT-AATAATT--ACAGACTGGATTACCATTGTAACTGG---TAAA-ATTTATCGCTGAAGCGAGTTGAAATGAACCCATTCAGC--TA--TTTAT--ATT----T---A----------TGCGGATA---AGT--C-AAGAAATTAGTAAAATGAAAATTTCAAT-TTTCAGAGAATGT-CAAC--CCAATATTT----ATGCAT---AT-TAAATTGATTTTAACGTAAAACTTG--TTGCTT-AAGC------G-T-A
gi|111585 : TT-ATTAATTACACAGACTGGATTACCATTATAACTTGAACTAAATAAACATCATTGAAGCAAGCTGAATTGAAACCATTCAGCAATA--TT--T--ATT----T---A----------TGCAGATA---AGT--C-AA
gi|111586 : CCATTATAATCGG---TAAA-ATTTATCACGGAAGTGATTTGAATTGAAAACATTCAG---TA--TT--TT-ATT----T---AGTATAATGTCCGCCGCTA---AAT--C-TAGAAATTAGTGCCATGAAAA--TTGAT-TTTCAGAGAATGT-AAAT--T---TATTT----ATGAAT---TTAAAAATTGATTTTAACGTAAAACTCG--TTTTCT-ATGC------A-T-GATTGATATGCACGTAA-AACCAACTT-GAT-GCATATAT-CC-ACCAATTT--TT-TAT-GCATCATAT--GCAGAT-AAACTTTTTATCTGGGGCTC
gi|111587 : AAGTGAATTTAACTGAAACAATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T-AAAAAATTAGTCCAATGAAGA--TAGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCATAAAACTCG--TTGCTT-CTGC------G-T-AATTGATACGCACGTAA-ATCGAGTCT-GGT-GC--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111588 : CCATTCAG-----------T--ATT----T---A----------TGTGGATA---AGT--C-CAGAAATTAGTGCAATGAAGA--TGGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAAAAGTGATTTTAGAGTAAAACTCG--TTGCCT-ATGC------G-T-CACTGATATGCACATTA-AACAAATTT-GAT-GT--GAAT-CC-ACCAATTT--TT-A----------ATACGCAGAT-ACACATCTTATCTGGGACTCTG
gi|111589 : C--TA--TT--T--ATT----T---A----------CACGGATA---AGT--T-AAAAAATTAGTCCAATGAAGA--TTGAT-TTTCTGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACACACATAA-AACAAATCT-GGT-GT--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATACGCAGAT-ATGCATCTTATCTGGAGCTCTG
gi|111590 : A--TCGAA-ATACAGGAAATGTGAAACAGC---TGTTTGGATACGCATTGTATTAACAATG-TTTT-GCGTGAAAGTAAAATTATTT---GC------G-T-AATGGGTACGCTTAAAA-AACAAAATT-GTTTGC--GTTTTCC-ATGAATTTATTTGAAT-G----AAATACGCAAAT-ACGCAGCTTATCTGGAGCACTG
gi|111591 : AT---ATAGAAATTGATTTAAGCGTAAAACATG--TTGCTT-ATGC------G-T-AATTGATATGCACGTAA-AACAAATCT-GGT-GT--G
gi|111592 : AAATTCAA-TTGTTT-ATGC------A-T-A-CCGGTACGCATATTG-ATTATTTTC-AAT-GC--TTTT-TT-GTCAATTT--C--AAT-GC-TTATTTACGCAAAT-ACGCACCTTATCTGGAGCACTG
gi|111593 : AAATTCAA-TTGTTT-ATGC------G-T-A-CTGGTACGCACATTT-ATTATTTTC-AAT-GC--TTTT-TTTGTCAATTC--C--AAT-GC-TTATTTACGCAAAT-ACGCACCTTATCTGGAGCACTG
gi|111594 : --TTATTT-ATGCAGATAAG-TCAATTGATTCACACGTAA-AACAAATTT-TAT-GC--GTAT-CC-ACCAATTT--TT-AAT-GCATCATATATGCAGAT-ACGCAACTAATATGGGGCTCTG
gi|111595 : T-ATAC------GGT-AATTGATATGCATGTAA-AACAAAATT-GAT-GC--GTAT-
gi|111596 : T-GTGC------G-T-AATTGATATGCATGGAA-AATAT-TTT-CAT-GC--GTTT-CT-TAGCACTT--TT-GCA-GCGTCAGTGACGCAGAT-AGGCAGCTTATCTGGGGCACTG
gi|111597 : TGC------G-T-AATGGGTACGCA--TAATAACAAAATT-GGTTGC--GTTT-TC--CAAACAT--AT-A-T-GAGTAGAATATGTAAAT-ACGCATCTTGTCTTGAGCACTG
gi|111598 : TGC------A-T-AAC-GGTACG-AT-TAA-AAAAAAATT-GTTTAC--GTTTTCC-ATGAATTTA-TT---T-GGGTGAAATATGCAGAT-ACGCATCTTATCTGGAGCACTG
gi|111599 : TCGGTACGCATGTAA-A-TAAATTTCAAT-GT--ATTT-CC-CCCCATTT--TT-A-T-GGGTAAAATATGCAGAA-ACACATCTTATCTGGCACTCTG
gi|111600 : TACGCAC-TAA-AAGAAAATT-GTTTGC--GTTTTCC-ACAAATTT------AT-GTGTGAAATAGGCAAAT-ATGCAGTTTATCTGGAGCACTG
gi|111601 : TT--TC-AAT-GC-TTATTTACGCAAAT-ACACACCTTATCTGGAGCACTG
gi|111602 : aaTT--TT-AATTGTGTAA-ATACGCAAAT-ACACACCTCATCTGGAGCTCTG
gi|111603 : TT--TT-AATTGCCTAA-ATACGCAAAT-AGGCATCTTATCTAGAGCTCTG
blockSeqs : A T C A AT TGCA CG A A T AAC T T AA TT TC TT TTTC TAT GTATAATGTCC AGG TAT TT A G AG CAA GGAT TGT AA A AGATAA G C T C G T AT T T A A AT G T A T A
blockSeqs : T . C . . . . . . . . T T . . TA TT . . T . TA . . . . . . . A . . . . . . G T . T . T T A . T G T .
blockSeqs : T . C . . . . . . . . . T . . . TT . . C . T . . . . . . . A . . . . . . G T . T . A T . . . G T .
blockSeqs : T . A . . . . . . . . . T . . . TT . . T . T . . . . . . . . . . . . . . A T . . . A T . . . A T .
blockSeqs : A . C . . . . . . . . . T . . . T . . A . A . . . . . . . . . . . . . . G . . . . A T . . . G A .
blockSeqs : A . A . . . . . . . . . G . . . . . . T . C . . . . . . . . . . . . . . G . . . . A T . . . G T .
blockSeqs : . . C . . . . . . . . . G . . . . . . C . C . . . . . . . . . . . . . . A . . . . C T . . . A T .
blockSeqs : . . . . . . . . . A . . . . . . C . C . . . . . . . . . . . . . . A . . . . C T . . . A T .
blockSeqs : . . . . . G . . . . . . T . C . . . . . . . . . . . . . . A . . . . C T . . . A T .
blockSeqs : . . . G . . . . . . C . C . . . . . . . . . . . . . . A . . . . C T . . . A T .
blockSeqs : . . . A . . . . . . C . C . . . . . . . . . . . . . . A . . . . C T . . . G T .
blockSeqs : . . . A . . . . . . C . T . . . . . . . . . . . . . . A . . . . C T . . . A T .
blockSeqs : . . . G . . . . . . T . C . . . . . . . . . . . . . . G . . . . C T . . . A T .
blockSeqs : . . . G . . . . . . T . C . . . . . . . . . . . . . . A . . . . A T . . . G T .
blockSeqs : . . . G . . . . . . T . C . . . . . . . . . . . . . . G . . . . C T . . . G T .
blockSeqs : . . . T . . . . . . T . T . . . . . . . . . . . . . . T . . . . A C . . . A A .
blockSeqs : . . . . . . . . . . T . C . . . . . . . . . . . . . . G . . . . G C . . . G T .
blockSeqs : . . . . . . T . T . . . . . . . . . . . . . . A . . . . C T . . . G T .
blockSeqs : . . . . . . C . . . . . . . . . . . A . . . . C T . . . G T .
blockSeqs : . . . . . . . A . . . . C T . . . G G .
blockSeqs : . . . . . . . A . . . . G . . . . G A .
blockSeqs : . . . . . . . A . . . . A . . . . G A .
blockSeqs : . . . . . . G . . . . G . . . . C A .
blockSeqs : . . . . . . T . . . . C . . . . . A .
blockSeqs : . . . . . A . . . . A . . . . . T .
blockSeqs : . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
finalCons : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
Alignments
lowQualScore : 1111 11
lowQualScore : 9 4 1 0 5 66 0000 66 4 4 0 2 0 333 4 0 1 22 22 55 33 4444 333 88888888888 333 3333 22 2 2 22 333 4444 333 55 1 444444 1 1 0 1 1 1 5 22 4 1 1 2 33 1 2 2 1 0 1
lowQualScore : . . . . . .. .... .. . . . . . ... . . . .. .. .. .. .... ... ........... ... .... .. . . .. ... .... ... .. . ...... . . . . . . . .. . . . . .. . . . . . .
lowQualScore : 7 4 1 9 0 99 6666 11 0 0 3 2 9 999 4 5 8 88 88 55 00 2222 555 88888888888 555 7777 88 1 1 99 777 5555 555 99 6 333333 5 5 2 4 4 6 7 00 4 5 0 6 33 4 8 7 4 1 4
consensus : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
Reference ( family-578 ) : TTTCTTCAAATTACAAAANAA-AATTGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCGAGTTNAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AGT--C-AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACNAATTT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111567 : TTTCTTCAAATTACAATATAA-AATTGTCATGGCGTGACAGTCATTTATGATTTAACCCGACGAGCGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTATAACCAGTGATATACCTAAAATATTGAAACA----GCTTTGGGAATTACAGGTATCCCGCCGGTACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCGAGCAACTTGGCGACATTGTTT-GTTAATTGCACAGACTGGGTTACCATTATAACTGG---TAGA-ATTTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T-AAAAAATTAGTGGAATGAAGA--TCGAT-TTTCAGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--ATAT-CC-ACAGATTT--TT-AAT-GTGTCATATACGCAAAT-ACGCATCTTATCTAGAGCTCTG
gi|111568 : TTTCTTTAAATTACAAAAACATAATTGTCATGGTATGACAGTCATTTATGATTTACCCCAAAGAGTAAGCATTTATTATATAAAAA-TAACCTCAATAT--GTTGTTGGATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTAGGAATAACAGGTATCCCGCAGGAACACTCAGC--TTTCCAAAGTTAGTGTCCCGT-CAAG-AAAAAATCAAGCAACTTAGCGACATTGTTT-ATTAATCGCACTGACTGGGTAACCATCATAACCGG---TAAA-ATTTATAGCTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T---AAAATTAGTGCAATTAAGA--TAGAT-TTTCACAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGTGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATATGCAAGTAA-AACAAATCT-GGT-GC--ATAT-TC-ACAAAATT--TT-AAT-GCATCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111569 : TTTCTTCAAATTACAAAATAA-AATTGTCATGGCATGACAGTCATTTATGATTTACTCCGATGAGTGAGCGTATATTATATAAAAA-TAACCTCAATAT--GTT---GAATAGGATTTTCAAACAGTGATATACCTAAAATATTGAAACA----GCTCTGGTTATTACAGGTATCCCACCGGAACACTCATC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATTGAGCAACTTAGTGACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATATTTGG---TAAA-ATTTATCACTGAAGCAAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------CGCGGATA---AGTTAT-AAAAAATTAGTACAATGAAGA--TCGAT-TTTCAGAGAATGC-AAAC--T---TATTT----ACAC-----ATAGAAATTGATTTTAGCGTAAAACTTG--TTGCTTAATGT------G-T-AATTGATACGCACATAA-AACAAATCT-TGT-GT--GTAT-CC-ACTAATTT--TT-AAT-GCGTTGTACACGCAGA--ACGCATCTTATCTGGAGCTCTG
gi|111570 : TTTGTTCAAATTACAATA-AA-AATTGTCATGACGTGACAGTCATTTATGATTTACCCCGATGAGTGAGTGCATATTATATAAAAA-TAACTTCATTAT--GTTGTTAAATAGGACTTTTAACCAGCAATATACCCAAAAAATTGAAATA----GCGCTGGGAATTACATGTATCCCGCTGGAACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-TAAAAATCAAGCAACTTAGCAACGTTGTTT-ATTAACTGCATAGACTGGGTTACCATTATAACCAG---AAAA-ATTTATCACTGAAGCGAGTTTAATTGAAACCATTCAGC--TA--TT--C--ATT----T---A----------TGCGGATA---ACT--T-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCAGAGAATGT-GAAC--T---TA-------ACGCAT---AAAGAAATTGATTTAAGTGTAAAACTTG--TTGCTT-ATGT------G-T-AATTGATACGCACGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATAAGCAGAT-ACGCATCATATCTGGAGCTCTG
gi|111571 : TTTCTTCAAATTACAAAATAA-AATTGTCATGGCGTAACAGCCATTTATGCTTTAACCCGACACATGAGTGTATACTATATAAAAA-TAACCTCAATAT--GTTGTTGAATAGGATTTTCAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGTTATATTGCCCGAACACTCAGC--TTTCCAAAGCTGGTATCCCGT-CAAGAAAAAAATCAAACAACTTAGCAACATTGTTT-ATTAATTGCACAGACTGGGTTACCATTATAACAGG---TAAA-ATTTATCACTGAAGTGAG-----TTGAAACCATTCAGC--TA--TT--T--ATT----T---A----------AGC---TA----------AAAAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-ATTTGATATGC-CA-AA-AAAAAATCT-GAT-AC--GTAT-CC-ACAAATTT--TT-AAT-GCATCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111572 : TTTCTTCAAATTACAAAATAA-AAATGTCTTGGCGTG----TCA--------------------GTGA-----TATTGTATAAAAA-TAACCTCAATA--------------GGATTTATAACCAGCGATATACCTAAAATATTGAAACA----GCTCTGGGAATTACAGGTATCCTACTGGTACACTCAGC--TTTCCAAAGTTGGTGTCCCGT-CAAG-AAAAAATCGAACAACTTAGCGACATTGTTT-ATTAATTGTACAGCCTGGGTTACCATAATAAACAG---TAGA-ATTTATCACTGAAGCAAGTTTAATTGAAACTATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--TAAAAAAATTAGTGCAATGAAGA--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACACAT---GTAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CT-GAAAATTT--TT-AAT-GCGTCAAATACGCAGAT-ACGCATCTTATCTGGAGCACTG
gi|111573 : TTTCTTCAAATTACAAAAAAA-AATTGCCATGGCGTGACAGCCATTTATGATTTACCCTAATGAGTGAGCGCATATTATATAAAAAATAACCTCAATAT--GTTGTTAAATAGGATTTTCAAGCAGCTATATACCTAAAATACTGAAACATGCAGCTCTGGGAATTACAGGTACCCCGCCGGAACATTCAGC--TTTCCAAAGTTGGTGTCTCAT-CAAG-AAAAAATCAAGCAACTTAGCAATAGTGTTT-ATCAATTGCATAGACTGGGTTACCATTATAACCGG---TTAA-ATTTATCACTTAAAC
gi|111574 : TTTCTTCAAATTACAAAA-AA-AATTGTCATGGCGTGACAGTCATTTATGATTTAATCCGACGACTGAGCGTAT
gi|111575 : TTTTCGAATTACAAAAAAA-AAATGTCATGGCGTGACAGTCATTTATGATTTACCCCGACGAGTGAGCGTATATTATATAAAA--TAACCTCAATATATGTTGTTGAATAGGAATTTCAACCAGCGATTTACCTAAAATATTGAAACA----GCTCTGAGTATTACAGGTATCCCGCCGGAACACTCAGC--TTTCCAAAGTCGGTGTCCCTT-CCAG-AAAAAATCAAGCAATTTAGAGACATTGTT--ATTAATTGCATAGACTGGGTTACCATTATAACCGG---TAAA-ATTTATCACTGAAGCCAGTTTAATTGAA-CAAATCAGC--TA--TT--T--ATT----T---A----------CGCGGATA---AAT--A-AAAAAATTAGTCCAATGAAGA--TCGAT-TTTCTGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCTTAAGACTCT--TTACTT-ATGC------G-T-AATTGATACGCATGTAA-AACAAATCT-GGT-GC--GTAT-CC-ACAAA-TT--TG-AAT-GCGTCATATACGCAGAT-ACGCATCTTATTTGGAGCTCTG
gi|111576 : CTGCCGGGA-ACCCAGCCGTGTTTAAA-----TATCATGCACAAT-GATAAATTAAGCATCTAAGCGACACTGTCT-ATTAATTACACAGACTGGATTACCATTATAATCGT---TAAC-AGTTATCATTCAAAC-AGTTGAATTGAAACAATTCAGC--TA--TT--TTTATT----T---A----------CGCGGATA---AGT--C-AAGAAATT--TGTAA--AAGC--TCAAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAAAATGGATTTTA------AACTCA--TTGCTT-ATGT------G-T-AATTGATACGCACGTAA-AACAAATTT-GAT-GT--GTAT-CC-ACCAATTT--TT-AAT-GCATCATATACGCAAAA-ACACATCTTATCTGGGACTCTG
gi|111577 : T-CAAT-GATAAATGAAACCTCTTAGCAACATTGTTT-ATTAAATACACTGACTGGATAACCATAATAACTGG---TAGA-ATTTATCACTGAAGCCATTTGAGTTGAAACCATTCAGC--TATTTT--T--ATT----T---A----------TGCCAACA---AGT--C-AATAAATTAGTGCATTGAAGA--T--ATATTTCAGAGAATGT-AAAC--A---AATTT----ATGCAT---ATAAAAAATGACTTAAGCATAAAACTCG--TTGCTT-AAGC------G-T-AATTAATGTGCACCTAA-AATAACTTT-GAT-GT--GAAT-CC-CCCAA-TT--TC-AAT-GCATCATATATGCAAAT-ATGCAGCTTA--TGGGGCTCTG
gi|111578 : AAAATTAAGCATCTTAGCGACATTGTTT-ATTAATTACACAGACTGGATTACCATTATAATCAG---TAAA-AATTATCACTAAAGCAAGTTAAATTGAAACCATTCAGC--TT--TTTCT--ATT----T---C----------CACAGATA---ACT--C-AAGAAATTAG-----TAAAGC--TCAAT-TTTCAGAGAGTGT-AAAC--T---TATTT----ACGCAT---ATAAAAATTGATTTCAGCGTAAAACTAG--TTGCTT-ATGC------G-T--ATTGTTTCGCACCTAA-AATTAATTT-GAT-GC--ATAT-CC-ACCAATTT--TT-AAT-GCATCAT--------AT-ACACATCTTATTTGGGGCTCTG
gi|111579 : AAATCAAACCTCTTAGCAACATTGTTT-TTTAATTACACAGACTGGATTATCATAATAACTGG---TAAA-ATTTATCACTGAAGCCAGTTGAATTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------CGTGGACA---AGT--C-AATAAATTAGTGCAATGAAGA--TCGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATTAAAATTGATTTTAGTGTAAAACTTG--TTGCTT-A--------------------A-GCATGTAA-AACAGCTCT-GAT-GC--ATAT-CC-ATCAATTT--TT-AAT-GCATCATATATGCAAAT-
gi|111580 : AAACATTTTAGCGGCATTGTTTTATTAATT-TGCAGACTGGGTTACAATTATAACCGG---CAAA-ATTTATCGCTGAAGTGAGTTGAATTGAAACCATTCAGC--TA---T--T--ATTTTTCT---A----------CGCCGATAAGGAGT--C--AATAATTAGTGCAATGAAGA--T
gi|111581 : AAATCAGCATCATTGTTT-ATTAATAGCACAGACTGGATTACCATTATAATCGG---TAAA-ACTTATCACTGAAGCGAGTTAAATTGAAACCATTCAGC--TA--TT--TTTATT----TTATA----------TGCTGATA---AGT--C-AGAAG-TTAGTA-----AAGC--TCAAT-CTTCAGAGAATGT-TAGT--T---TATTT----ACGCAT---ATAAAAATTGATTTTAGTGTAAAACTCT--TTGCTT-ATGC------G-T-AATTGATAAGCACGTAA-AATAAATCT-GAT-TC--GAAT-CC-ACCAATTT--TT-AAT-GCGTCATATACGT---T------TCTTATCTGGGGCTCTG
gi|111582 : TTAGCGACATTGTTT-ATTACTTGCACAGACTGGATGACCGT
gi|111583 : TT-ATTAATTACATGTACTGCATTACCATTTTAACAAG---TAAATATTT--CATTGAAGTGAGATAAACTGAAACCATTCAGC--TA--TT--TTTATT----T---A----------TGTGAACA---AGT--T-GAGAAATTAGTGCAAAGAAGA--TCTAT-TTTTAGAGAATGT-GAAC--T---TATTT----ACGCAT---ACAAAAATTGATTTTAGCATATAACTCA--TTGCTT-ATGC------C-T-TATTGATATGCATGTTA-A-------------------------ACCAATTT--TT-AAT-GCATCATATATGCA-ATAACACATCCTATCTTGGTCTCT
gi|111584 : TT-AATAATT--ACAGACTGGATTACCATTGTAACTGG---TAAA-ATTTATCGCTGAAGCGAGTTGAAATGAACCCATTCAGC--TA--TTTAT--ATT----T---A----------TGCGGATA---AGT--C-AAGAAATTAGTAAAATGAAAATTTCAAT-TTTCAGAGAATGT-CAAC--CCAATATTT----ATGCAT---AT-TAAATTGATTTTAACGTAAAACTTG--TTGCTT-AAGC------G-T-A
gi|111585 : TT-ATTAATTACACAGACTGGATTACCATTATAACTTGAACTAAATAAACATCATTGAAGCAAGCTGAATTGAAACCATTCAGCAATA--TT--T--ATT----T---A----------TGCAGATA---AGT--C-AA
gi|111586 : CCATTATAATCGG---TAAA-ATTTATCACGGAAGTGATTTGAATTGAAAACATTCAG---TA--TT--TT-ATT----T---AGTATAATGTCCGCCGCTA---AAT--C-TAGAAATTAGTGCCATGAAAA--TTGAT-TTTCAGAGAATGT-AAAT--T---TATTT----ATGAAT---TTAAAAATTGATTTTAACGTAAAACTCG--TTTTCT-ATGC------A-T-GATTGATATGCACGTAA-AACCAACTT-GAT-GCATATAT-CC-ACCAATTT--TT-TAT-GCATCATAT--GCAGAT-AAACTTTTTATCTGGGGCTC
gi|111587 : AAGTGAATTTAACTGAAACAATTCAGC--TA--TT--T--ATT----T---A----------TGCGGATA---AGT--T-AAAAAATTAGTCCAATGAAGA--TAGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCATAAAACTCG--TTGCTT-CTGC------G-T-AATTGATACGCACGTAA-ATCGAGTCT-GGT-GC--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATACGCAGAT-ACGCATCTTATCTGGAGCTCTG
gi|111588 : CCATTCAG-----------T--ATT----T---A----------TGTGGATA---AGT--C-CAGAAATTAGTGCAATGAAGA--TGGAT-TTTCAGAGAATGT-AAAC--T---TATTT----ACGCAT---ATAAAAAGTGATTTTAGAGTAAAACTCG--TTGCCT-ATGC------G-T-CACTGATATGCACATTA-AACAAATTT-GAT-GT--GAAT-CC-ACCAATTT--TT-A----------ATACGCAGAT-ACACATCTTATCTGGGACTCTG
gi|111589 : C--TA--TT--T--ATT----T---A----------CACGGATA---AGT--T-AAAAAATTAGTCCAATGAAGA--TTGAT-TTTCTGAGACTGT-AAAC--T---TATTT----ACGCAT---ATAGAAATTGATTTTAGCGTAAAACTCG--TTGCTT-ATGC------G-T-AATTGATACACACATAA-AACAAATCT-GGT-GT--GTAT-CC-ACAAA-TT--TT-AAT-GCGTCATATACGCAGAT-ATGCATCTTATCTGGAGCTCTG
gi|111590 : A--TCGAA-ATACAGGAAATGTGAAACAGC---TGTTTGGATACGCATTGTATTAACAATG-TTTT-GCGTGAAAGTAAAATTATTT---GC------G-T-AATGGGTACGCTTAAAA-AACAAAATT-GTTTGC--GTTTTCC-ATGAATTTATTTGAAT-G----AAATACGCAAAT-ACGCAGCTTATCTGGAGCACTG
gi|111591 : AT---ATAGAAATTGATTTAAGCGTAAAACATG--TTGCTT-ATGC------G-T-AATTGATATGCACGTAA-AACAAATCT-GGT-GT--G
gi|111592 : AAATTCAA-TTGTTT-ATGC------A-T-A-CCGGTACGCATATTG-ATTATTTTC-AAT-GC--TTTT-TT-GTCAATTT--C--AAT-GC-TTATTTACGCAAAT-ACGCACCTTATCTGGAGCACTG
gi|111593 : AAATTCAA-TTGTTT-ATGC------G-T-A-CTGGTACGCACATTT-ATTATTTTC-AAT-GC--TTTT-TTTGTCAATTC--C--AAT-GC-TTATTTACGCAAAT-ACGCACCTTATCTGGAGCACTG
gi|111594 : --TTATTT-ATGCAGATAAG-TCAATTGATTCACACGTAA-AACAAATTT-TAT-GC--GTAT-CC-ACCAATTT--TT-AAT-GCATCATATATGCAGAT-ACGCAACTAATATGGGGCTCTG
gi|111595 : T-ATAC------GGT-AATTGATATGCATGTAA-AACAAAATT-GAT-GC--GTAT-
gi|111596 : T-GTGC------G-T-AATTGATATGCATGGAA-AATAT-TTT-CAT-GC--GTTT-CT-TAGCACTT--TT-GCA-GCGTCAGTGACGCAGAT-AGGCAGCTTATCTGGGGCACTG
gi|111597 : TGC------G-T-AATGGGTACGCA--TAATAACAAAATT-GGTTGC--GTTT-TC--CAAACAT--AT-A-T-GAGTAGAATATGTAAAT-ACGCATCTTGTCTTGAGCACTG
gi|111598 : TGC------A-T-AAC-GGTACG-AT-TAA-AAAAAAATT-GTTTAC--GTTTTCC-ATGAATTTA-TT---T-GGGTGAAATATGCAGAT-ACGCATCTTATCTGGAGCACTG
gi|111599 : TCGGTACGCATGTAA-A-TAAATTTCAAT-GT--ATTT-CC-CCCCATTT--TT-A-T-GGGTAAAATATGCAGAA-ACACATCTTATCTGGCACTCTG
gi|111600 : TACGCAC-TAA-AAGAAAATT-GTTTGC--GTTTTCC-ACAAATTT------AT-GTGTGAAATAGGCAAAT-ATGCAGTTTATCTGGAGCACTG
gi|111601 : TT--TC-AAT-GC-TTATTTACGCAAAT-ACACACCTTATCTGGAGCACTG
gi|111602 : aaTT--TT-AATTGTGTAA-ATACGCAAAT-ACACACCTCATCTGGAGCTCTG
gi|111603 : TT--TT-AATTGCCTAA-ATACGCAAAT-AGGCATCTTATCTAGAGCTCTG