lowQualScore : 11111111 11 1
lowQualScore : 5 1 2222 6 77777777 1 11 1 4 1 1 00 55 5
lowQualScore : . . .... . ........ . .. . . . . .. .. .
lowQualScore : 6 2 5555 3 77777777 1 66 1 2 1 2 66 99 0
consensus : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACGTAAC---NGTAT-TCAA--TA-TCGATA-CGAA-ATTTGGCAATTGCATAGAGGAAATATTAC-TTTTTAT
Reference ( gi|17856 ) : GTAGCCATTACATGCGTAT-TT----TCTAGCGCTGCTGCTACAGAAT---GGTAT-TCAA--TA-TCAATA-TGAA-ATTCAGCAATTGCATAGAGGAAATATTAC-CTTTGAT
gi|17857 : GTAGCCATTACATTCATAT-TT----TCTAGAGCTGTTGCTAT-TAAC---AGTAT-TCAA--TA-TCAATA-TGGA-ATTTGGCAATTGCATAGAGGAAATATTACTCTTT
gi|17859 : GTAGCCATTATATACATAT-TT----TCTAGCATTGTTGCTACATAAC---GGTAT-TTAA--TA-TAAATA-TGAACATTGA-CAATTGCATACAGGAAATATTAT-TTT
gi|17861 : GTGGCCATTACCTGCATAT-TT----GCTAGCACT--TGTTACATAAA---AGTAT-ATAA--TA-TCAATA-TGAA-ATTTGGCAATTGCATAGAGGAACTATTAA-CTTTTAT
gi|17866 : GTAGCCATTACATGTATAC-TT----TCTAGTGCTGTTGCTGCGTAAC---GGTAT-TCAA--TA-TCAATA-CGAA-ACTTTACAATTTCTTAGAGGACATATTA
gi|17863 : GTAACCATACCATGCATAT-TT----TCTAACGCTGTTGCTACATAAC---TGTAT-TTAG--TA-TAGATA-CGAA-ATTTTGCAATTGTATAGAAGAAATATTAC-atttgtat
gi|17870 : GTTGCCATTACATTCATAT-TT----TTTAGAGCTGTTACTA--GGGTTAGGGTATATCAA--TA-TCAATG-TGAA-ATTTAGTAATTGCATAGAGAAAATGTTAC-TTTT
gi|17867 : GTAGTCATTACATGC--AT-CT----TTTAGTACTGTTGCTACGCAAC---GGTAT-TCCA--TA-TCAATA-TAAC-ATTTGGCATTTGCTTAGACGATATATTAC-TTTTCATt
gi|17869 : GTAGCCATTGCATGCATTTGTT----TTTAGCACTGTTGCAACATAAC---CGTTG-TCAA---A-TAGATA-CGAA-AGTGAGCAATTGCATAGAGAAAATATAAC-TTTTTAT
gi|17858 : GTAACCATTACATACATAT-TT----TCTAGCGCTGTTGCTACATAAT---CGTAT-TCAA--TA-TGGGTA-TGTA-ATT
gi|17868 : GTAGCCATTACATGCATAT-TT-----ATAGCGCTGATGCTACGTAAC---GGTGT-TCAA--TA-TCAATA-CGAA-At
gi|17862 : GCAGCCATTAAATGCATAT-TT-----ATAGTGCTGTTGCTGTATAAC---CGTAT-TTCA--TA-TAGGTA-TGAA-ATTTGGCATTTGCATTGAGATAATATTAC-TTTTTAT
gi|17871 : GTAACCATTACATGCATAT-TT----TCTAGTGCTGTTGCTACATAAC---CGTAT-TCAA--TA-TAAGTC-TGGG-ATT
gi|17873 : GTAACCATTACATGCATAT-TT----TCTAGAGCTGTTCCTACATAAC---AGTAT-TCAA--TA-TAGGTC-TGAA-ATTt
gi|17860 : GTAACCATGTCAAGTATAT-TT----TTCTGTA-TGTTGCTACACACT---CATTT-TCAA--TA-TAGATA-TAAA-ATTTACCAATTACATAGAGGAAGTATTAC-TTTTTATt
gi|17864 : GTAGCAATTACATGCATAG-TT----T-TAGCACTTTTGTTAC-----------------A--TA-TCAATC-TGAA-ATTTGGCAATTGCATAGAGCAAATA
gi|17872 : GTAACCATCATATGAATAT-TT----TCTTGCACTGTTGTTTCATAAC---TGTAT-TCAA--TA-TAAATA-CGAA-AATTGGCAGGTGTAT-------ATATTAC-TTTTTAT
gi|17865 : GTATCCATGCTATGAATAT-TT----TCTAGCGCTGTAGCTTCATAAC---CATAT-TCAA--TA-TAGATA-CAAA-ATGTGGCAATTGTATAGAATACAAATCAC-TTTT
gi|17874 : GCAGACATTACATGTATAT-TT----TTAAGTGCTGTTGCTATGTAAC---GGTAT-TCAA--TA-TT-TTA-TAAA-ACTtgt
gi|17875 : GTATCCATTACATGTATA--TT----TCTAG-G-TGTTGCTA-A-------GCTAT-TCAT--TA-TCAATA-TGA
gi|17876 : TAGCCATTACATGCAAAT-TT----TCTAACGCTATTGCTATGTAAC---AGTAA-AAAG--TA-TCAATA-TGGA-ATTCGGCAATTGCACAAAGGAAATATTAC-TTTTTAT
gi|17879 : TAGCCATTACAAATATAT-TT----T-TAGCGCTGTTTCTACGTAAC---TGTAT-TCAA--TC-CCAATA-TAAA-ATTTAGCAAATGCAGAGATTAAATATTAC-TTTT
gi|17880 : TAACCATACCATGCATAT-TTAATTTCTAGGGCTGTTGCCACAAAAC---CGTAA--CAAAATA-TAGATA-TGAA-ATCTGGCAATTGCAAAGGGAAAATATTAC-TTTT
gi|17881 : TAACCATTACATGCATAG-TT----TCTAGCGCTGTTGCTGCGTAAC---TGTAT-TTAA--TA-TAGATACTAAA-ATTTGCCAATTACATAAAta
gi|17877 : TAGCCATTACATGTATAT-TT----TCTGGCGCTGTTGCTACATGAC---CGTGT-TCAA--CATTTTACA-T-AA-ATTTACCAAT
gi|17882 : TAGCCATTACATGCATAT-TT----TCTAGCGC-----------------AGTAT-TCAA--TA-TCAATA-AGA
gi|17878 : TAGCCATTACA--CATAT-AT----TCTAGCGCTGTTGCTACATAAC---CGTTT-TTAttt
gi|17883 : AGCCATTACATGCGTAT-TT----CCTTGCGATGTTGCAACATTAC---CATAC-TCAG--TA-TAGTTA-CAAA-ATTTGGCAATTGCATAGAGGAAATATTAC-TTT
gi|17884 : AGCCATTACATGCATAC-TT-----CTCATTCTTCTGCTACATAAC---CGTAT-TTAA--TA-TAGATA-CGAA-TTGTGGCAATTGCATAGAGGAAATATTAC-ctat
gi|17885 : GCCATTGCATGTGAAT-TT----TCTA--GCTGTTGTTACGCAAC---GGTAA-TCAA--TT-TCAATA-CAAA-AT-------TTGCATTGAGGAAATATTtgtttat
gi|17886 : CCATACCATACGTAT-TT----TCTAGCGCTGTTACTACATAAC---CGTAT-TCAG--TA-T-AACA---AA-ATTTGGCAATTGCATAGGGGAAATGTCAC-TTT
gi|17887 : TTACATGCATAT-GT----TTTAGCACTGTTGCTACATAAC---GGTAT-TCAA--TA-TTAATA-TAAA-TTTTGGCAATTGCATAAAAGAAATATTAC-
gi|17888 : TACATGCATTT-TT----TCTAGCACTGTTGCTATGTAAC---AGTAT-TCAA--TA--CAGTA-T
gi|17889 : TAT-TT----TCTAGCACTGTTGTTACATTAC---AGTAT-TCAA--CA-TAGATA-CAAA-ATTTGGCAATTGTAAAATGGAAAAATAAC-TTTTTAT
gi|17890 : TAT-GT----TTTAACGTTGTTGCTACATAAC---CATAG-TCAA--TA-AAGATA-GGAA-ATTTGGCAATTGCATGGA--AAATATTA
gi|17891 : AGCACCTTTGCTACATAAT---GGTAT-TCAA--TA-TCAATA-TTAA-TTTTTACAATTGCATAGAGGAAATATTAC-ttaattat
gi|17892 : -TCAATA-TGAA-ATTTGGCAGTTGCATTGAAGATATATTAC-
Alignments
lowQualScore : 1 2222 55 2 1 11 44 22 1
lowQualScore : . .... .. . . .. .. .. .
lowQualScore : 1 4444 11 5 1 66 11 22 2
consensus : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
Reference ( family-577 ) : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
gi|17856 : GTAGCCATTACATGCGTAT-TT----TCTAGCGCTGCTGCTACA-GAATGGTAT-TCAA--TATCAATAT-G-AAATTCAGCAATTGCATAGAGGAAATATTACCTTTGAT
gi|17857 : GTAGCCATTACATTCATAT-TT----TCTAGAGCTGTTGCTAT--TAACAGTAT-TCAA--TATCAATAT-G-GAATTTGGCAATTGCATAGAGGAAATATTACTCTTT
gi|17858 : GTAACCATTACATACATAT-TT----TCTAGCGCTGTTGCTACA-TAATCGTAT-TCAA--TATGGGTAT-G-TAATTT
gi|17859 : GTAGCCATTATATACATAT-TT----TCTAGCATTGTTGCTACA-TAACGGTAT-TTAA--TATAAATAT-G-AACATTGACAATTGCATACAGGAAATATTATTTT
gi|17860 : GTAACCATGTCAAGTATAT-TT----TTCTGTA-TGTTGCTACA-CACTCATTT-TCAA--TATAGATAT-A-AAATTTACCAATTACATAGAGGAAGTATTACTTTTTAT
gi|17861 : GTGGCCATTACCTGCATAT-TT----GCTAGCACT--TGTTACA-TAAAAGTAT-ATAA--TATCAATAT-G-AAATTTGGCAATTGCATAGAGGAACTATTAACTTTTAT
gi|17862 : GCAGCCATTAAATGCATAT-TT-----ATAGTGCTGTTGCTGTA-TAACCGTAT-TTCA--TATAGGTAT-G-AAATTTGGCATTTGCATTGAGATAATATTACTTTTTAT
gi|17863 : GTAACCATACCATGCATAT-TT----TCTAACGCTGTTGCTACA-TAACTGTAT-TTAG--TATAGATAC-G-AAATTTTGCAATTGTATAGAAGAAATATTAC
gi|17864 : GTAGCAATTACATGCATAG-TT----T-TAGCACTTTTGTTAC---------------A--TATCAATCT-G-AAATTTGGCAATTGCATAGAGCAAATA
gi|17865 : GTATCCATGCTATGAATAT-TT----TCTAGCGCTGTAGCTTCA-TAACCATAT-TCAA--TATAGATAC-A-AAATGTGGCAATTGTATAGAATACAAATCACTTTTTGT
gi|17866 : GTAGCCATTACATGTATAC-TT----TCTAGTGCTGTTGCTGCG-TAACGGTAT-TCAA--TATCAATAC-G-AAACTTTACAATTTCTTAGAGGACATATTAATTTGTAT
gi|17867 : GTAGTCATTACATGCATCT-TT----T--AGTACTGTTGCTACG-CAACGGTAT-TCCA--TATCAATAT-A-ACATTTGGCATTTGCTTAGACGATATATTACTTTTCAT
gi|17868 : GTAGCCATTACATGCATAT-TT-----ATAGCGCTGATGCTACG-TAACGGTGT-TCAA--TATCAATAC-G-AAA
gi|17869 : GTAGCCATTGCATGCATTTGTT----TTTAGCACTGTTGCAACA-TAACCGTTG-TCAA---ATAGATAC-G-AAAGTGAGCAATTGCATAGAGAAAATATAACTTTTTAT
gi|17870 : GTTGCCATTACATTCATAT-TT----TTTAGAGCTGTTACTAGGGTTAGGGTATATCAA--TATCAATGT-G-AAATTTAGTAATTGCATAGAGAAAATGTTACTTTTT
gi|17871 : GTAACCATTACATGCATAT-TT----TCTAGTGCTGTTGCTACA-TAACCGTAT-TCAA--TAT
gi|17872 : GTAACCATCATATGAATAT-TT----TCTTGCACTGTTGTTTCA-TAACTGTAT-TCAA--TATAAATAC-G-AAAATTGGCAGGTGTAT-------ATATTACTTTTTATaagtctgggattt
gi|17873 : GTAACCATTACATGCATAT-TT----TCTAGAGCTGTTCCTACA-TAACAGTAT-TCAA--TATAGGTCT-G-AAATTT
gi|17874 : GCAGACATTACATGTATAT-TT----TTAAGTGCTGTTGCTATG-TAACGGTAT-TCAA--TAT
gi|17875 : GTATCCATTACATGTATA--TT----TCTAG-G-TGTTGCTA----AGC--TAT-TCAT--TATCAATAT-G-tttataaaact
gi|17876 : TAGCCATTACATGCAAAT-TT----TCTAACGCTATTGCTATG-TAACAGTAA-AAAG--TATCAATAT-G-GAATTCGGCAATTGCACAAAGGAAATATTACTTTTTAT
gi|17877 : TAGCCATTACATGTATAT-TT----TCTGGCGCTGTTGCTACA-TGACCGTGT-TCAA--CATTT-TAC-ATAAATTTACCAAT
gi|17878 : TAGCCATTACA--CATAT-AT----TCTAGCGCTGTTGCTACA-TAACCGTTT-TTA
gi|17879 : TAGCCATTACAAATATAT-TT----T-TAGCGCTGTTTCTACG-TAACTGTAT-TCAA--TCCCAATAT-A-AAATTTAGCAAATGCAGAGATTAAATATTACTTTT
gi|17880 : TAACCATACCATGCATAT-TTAATTTCTAGGGCTGTTGCCACA-AAACCGTAA--CAAAATATAGATAT-G-AAATCTGGCAATTGCAAAGGGAAAATATTACTTTTTA
gi|17881 : TAACCATTACATGCATAG-TT----TCTAGCGCTGTTGCTGCG-TAACTGTAT-TTAA--TATAGATACTA-AAATTTGCCAATTACATAAA
gi|17882 : TAGCCATTACATGCATAT-TT----TCTAGCG---------------CAGTAT-TCAA--TATCAATA----AGATTT
gi|17883 : AGCCATTACATGCGTAT-TT----CCTTGCGATGTTGCAACA-TTACCATAC-TCAG--TATAGTTAC-A-AAATTTGGCAATTGCATAGAGGAAATATTACTTTCTAT
gi|17884 : AGCCATTACATGCATAC-TT-----CTCATTCTTCTGCTACA-TAACCGTAT-TTAA--TATAGATAC-G-AATTGTGGCAATTGCATAGAGGAAATATTACTGTTTAT
gi|17885 : GCCATTGCATGTGAAT-TT----TCTAGC--TGTTGTTACG-CAACGGTAA-TCAA--TTTCAATAC-A-AAAT-------TTGCATTGAGGAAATATT
gi|17886 : CCATACCATACGTAT-TT----TCTAGCGCTGTTACTACA-TAACCGTAT-TCAG--TAT--A-AC-A-AAATTTGGCAATTGCATAGGGGAAATGTCACTTT
gi|17887 : TTACATGCATAT-GT----TTTAGCACTGTTGCTACA-TAACGGTAT-TCAA--TATTAATAT-A-AATTTTGGCAATTGCATAAAAGAAATATTAC
gi|17888 : TACATGCATTT-TT----TCTAGCACTGTTGCTATG-TAACAGTAT-TCAA--TA
gi|17889 : TAT-TT----TCTAGCACTGTTGTTACA-TTACAGTAT-TCAA--CATAGATAC-A-AAATTTGGCAATTGTAAAATGGAAAAATAACTTTTTATcagtat
gi|17890 : TAT-GT----TTTAACGTTGTTGCTACA-TAACCATAG-TCAA--TAAAGATAG-G-AAATTTGGCAATTGCATGGA--AAATATTATTAATTAT
gi|17891 : AGCACCTTTGCTACA-TAATGGTAT-TCAA--TATCAATAT-T-AATTTTTACAATTGCATAGAGGAAATATTAC
gi|17892 : TCAATAT-G-AAATTTGGCAGTTGCATTGAAGATATATTAC
Alignments
lowQualScore : 1 2222 55 2 1 11 44 22 1
lowQualScore : . .... .. . . .. .. .. .
lowQualScore : 1 4444 11 5 1 66 11 22 2
consensus : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
Reference ( family-577 ) : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
gi|17856 : GTAGCCATTACATGCGTAT-TT----TCTAGCGCTGCTGCTACA-GAATGGTAT-TCAA--TATCAATAT-G-AAATTCAGCAATTGCATAGAGGAAATATTACCTTTGAT
gi|17857 : GTAGCCATTACATTCATAT-TT----TCTAGAGCTGTTGCTAT--TAACAGTAT-TCAA--TATCAATAT-G-GAATTTGGCAATTGCATAGAGGAAATATTACTCTTT
gi|17858 : GTAACCATTACATACATAT-TT----TCTAGCGCTGTTGCTACA-TAATCGTAT-TCAA--TATGGGTAT-G-TAATTT
gi|17859 : GTAGCCATTATATACATAT-TT----TCTAGCATTGTTGCTACA-TAACGGTAT-TTAA--TATAAATAT-G-AACATTGACAATTGCATACAGGAAATATTATTTT
gi|17860 : GTAACCATGTCAAGTATAT-TT----TTCTGTA-TGTTGCTACA-CACTCATTT-TCAA--TATAGATAT-A-AAATTTACCAATTACATAGAGGAAGTATTACTTTTTAT
gi|17861 : GTGGCCATTACCTGCATAT-TT----GCTAGCACT--TGTTACA-TAAAAGTAT-ATAA--TATCAATAT-G-AAATTTGGCAATTGCATAGAGGAACTATTAACTTTTAT
gi|17862 : GCAGCCATTAAATGCATAT-TT-----ATAGTGCTGTTGCTGTA-TAACCGTAT-TTCA--TATAGGTAT-G-AAATTTGGCATTTGCATTGAGATAATATTACTTTTTAT
gi|17863 : GTAACCATACCATGCATAT-TT----TCTAACGCTGTTGCTACA-TAACTGTAT-TTAG--TATAGATAC-G-AAATTTTGCAATTGTATAGAAGAAATATTAC
gi|17864 : GTAGCAATTACATGCATAG-TT----T-TAGCACTTTTGTTAC---------------A--TATCAATCT-G-AAATTTGGCAATTGCATAGAGCAAATA
gi|17865 : GTATCCATGCTATGAATAT-TT----TCTAGCGCTGTAGCTTCA-TAACCATAT-TCAA--TATAGATAC-A-AAATGTGGCAATTGTATAGAATACAAATCACTTTTTGT
gi|17866 : GTAGCCATTACATGTATAC-TT----TCTAGTGCTGTTGCTGCG-TAACGGTAT-TCAA--TATCAATAC-G-AAACTTTACAATTTCTTAGAGGACATATTAATTTGTAT
gi|17867 : GTAGTCATTACATGCATCT-TT----T--AGTACTGTTGCTACG-CAACGGTAT-TCCA--TATCAATAT-A-ACATTTGGCATTTGCTTAGACGATATATTACTTTTCAT
gi|17868 : GTAGCCATTACATGCATAT-TT-----ATAGCGCTGATGCTACG-TAACGGTGT-TCAA--TATCAATAC-G-AAA
gi|17869 : GTAGCCATTGCATGCATTTGTT----TTTAGCACTGTTGCAACA-TAACCGTTG-TCAA---ATAGATAC-G-AAAGTGAGCAATTGCATAGAGAAAATATAACTTTTTAT
gi|17870 : GTTGCCATTACATTCATAT-TT----TTTAGAGCTGTTACTAGGGTTAGGGTATATCAA--TATCAATGT-G-AAATTTAGTAATTGCATAGAGAAAATGTTACTTTTT
gi|17871 : GTAACCATTACATGCATAT-TT----TCTAGTGCTGTTGCTACA-TAACCGTAT-TCAA--TAT
gi|17872 : GTAACCATCATATGAATAT-TT----TCTTGCACTGTTGTTTCA-TAACTGTAT-TCAA--TATAAATAC-G-AAAATTGGCAGGTGTAT-------ATATTACTTTTTATaagtctgggattt
gi|17873 : GTAACCATTACATGCATAT-TT----TCTAGAGCTGTTCCTACA-TAACAGTAT-TCAA--TATAGGTCT-G-AAATTT
gi|17874 : GCAGACATTACATGTATAT-TT----TTAAGTGCTGTTGCTATG-TAACGGTAT-TCAA--TAT
gi|17875 : GTATCCATTACATGTATA--TT----TCTAG-G-TGTTGCTA----AGC--TAT-TCAT--TATCAATAT-G-tttataaaact
gi|17876 : TAGCCATTACATGCAAAT-TT----TCTAACGCTATTGCTATG-TAACAGTAA-AAAG--TATCAATAT-G-GAATTCGGCAATTGCACAAAGGAAATATTACTTTTTAT
gi|17877 : TAGCCATTACATGTATAT-TT----TCTGGCGCTGTTGCTACA-TGACCGTGT-TCAA--CATTT-TAC-ATAAATTTACCAAT
gi|17878 : TAGCCATTACA--CATAT-AT----TCTAGCGCTGTTGCTACA-TAACCGTTT-TTA
gi|17879 : TAGCCATTACAAATATAT-TT----T-TAGCGCTGTTTCTACG-TAACTGTAT-TCAA--TCCCAATAT-A-AAATTTAGCAAATGCAGAGATTAAATATTACTTTT
gi|17880 : TAACCATACCATGCATAT-TTAATTTCTAGGGCTGTTGCCACA-AAACCGTAA--CAAAATATAGATAT-G-AAATCTGGCAATTGCAAAGGGAAAATATTACTTTTTA
gi|17881 : TAACCATTACATGCATAG-TT----TCTAGCGCTGTTGCTGCG-TAACTGTAT-TTAA--TATAGATACTA-AAATTTGCCAATTACATAAA
gi|17882 : TAGCCATTACATGCATAT-TT----TCTAGCG---------------CAGTAT-TCAA--TATCAATA----AGATTT
gi|17883 : AGCCATTACATGCGTAT-TT----CCTTGCGATGTTGCAACA-TTACCATAC-TCAG--TATAGTTAC-A-AAATTTGGCAATTGCATAGAGGAAATATTACTTTCTAT
gi|17884 : AGCCATTACATGCATAC-TT-----CTCATTCTTCTGCTACA-TAACCGTAT-TTAA--TATAGATAC-G-AATTGTGGCAATTGCATAGAGGAAATATTACTGTTTAT
gi|17885 : GCCATTGCATGTGAAT-TT----TCTAGC--TGTTGTTACG-CAACGGTAA-TCAA--TTTCAATAC-A-AAAT-------TTGCATTGAGGAAATATT
gi|17886 : CCATACCATACGTAT-TT----TCTAGCGCTGTTACTACA-TAACCGTAT-TCAG--TAT--A-AC-A-AAATTTGGCAATTGCATAGGGGAAATGTCACTTT
gi|17887 : TTACATGCATAT-GT----TTTAGCACTGTTGCTACA-TAACGGTAT-TCAA--TATTAATAT-A-AATTTTGGCAATTGCATAAAAGAAATATTAC
gi|17888 : TACATGCATTT-TT----TCTAGCACTGTTGCTATG-TAACAGTAT-TCAA--TA
gi|17889 : TAT-TT----TCTAGCACTGTTGTTACA-TTACAGTAT-TCAA--CATAGATAC-A-AAATTTGGCAATTGTAAAATGGAAAAATAACTTTTTATcagtat
gi|17890 : TAT-GT----TTTAACGTTGTTGCTACA-TAACCATAG-TCAA--TAAAGATAG-G-AAATTTGGCAATTGCATGGA--AAATATTATTAATTAT
gi|17891 : AGCACCTTTGCTACA-TAATGGTAT-TCAA--TATCAATAT-T-AATTTTTACAATTGCATAGAGGAAATATTAC
gi|17892 : TCAATAT-G-AAATTTGGCAGTTGCATTGAAGATATATTAC
blockSeqs : G AATT GG A A AA CA CT T
blockSeqs : . . A C . . GG T .
blockSeqs : . . A G . . AA T .
blockSeqs : . . A C . . AG T .
blockSeqs : . . A A . . CA T .
blockSeqs : . . A C . . AG T .
blockSeqs : . . A T . . AG T .
blockSeqs : . . A C . . CA C .
blockSeqs : . . G G . . AG T .
blockSeqs : . . G G . . CA C .
blockSeqs : . . G G . . CA C .
blockSeqs : . . A C . . CA T .
blockSeqs : . . A G . . AG C .
blockSeqs : . . A C . . CA C .
blockSeqs : . . A T . . AA T .
blockSeqs : . . G A . . AG C .
blockSeqs : . . G G . . CA T .
blockSeqs : . . A A . . CA T .
blockSeqs : . . A C . . TT T .
blockSeqs : . . G C . . CA C .
blockSeqs : . . A T . . AG T .
blockSeqs : . . G C . . AG T .
blockSeqs : . . A T . . CA C .
blockSeqs : . . A A . . AG C .
blockSeqs : . . G C . . AG C .
blockSeqs : . . A C . . CA C .
blockSeqs : . . A G . . TA T .
blockSeqs : . . G C . . AG C .
blockSeqs : . . A G . . AG G .
blockSeqs : . . A A . . CA T .
blockSeqs : . . A A . . CA T .
blockSeqs : . . . C . . . . .
blockSeqs : . . . G . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
finalCons : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
Alignments
lowQualScore : 1 2222 55 2 1 11 44 22 1
lowQualScore : . .... .. . . .. .. .. .
lowQualScore : 1 4444 11 5 1 66 11 22 2
consensus : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
Reference ( family-577 ) : GTAGCCATTACATGCATAT-TT----TCTAGCGCTGTTGCTACG-TAACNGTAT-TCAA--TATCGATAC-G-AAATTTGGCAATTGCATAGAGGAAATATTACTTTTTAT
gi|17856 : GTAGCCATTACATGCGTAT-TT----TCTAGCGCTGCTGCTACA-GAATGGTAT-TCAA--TATCAATAT-G-AAATTCAGCAATTGCATAGAGGAAATATTACCTTTGAT
gi|17857 : GTAGCCATTACATTCATAT-TT----TCTAGAGCTGTTGCTAT--TAACAGTAT-TCAA--TATCAATAT-G-GAATTTGGCAATTGCATAGAGGAAATATTACTCTTT
gi|17858 : GTAACCATTACATACATAT-TT----TCTAGCGCTGTTGCTACA-TAATCGTAT-TCAA--TATGGGTAT-G-TAATTT
gi|17859 : GTAGCCATTATATACATAT-TT----TCTAGCATTGTTGCTACA-TAACGGTAT-TTAA--TATAAATAT-G-AACATTGACAATTGCATACAGGAAATATTATTTT
gi|17860 : GTAACCATGTCAAGTATAT-TT----TTCTGTA-TGTTGCTACA-CACTCATTT-TCAA--TATAGATAT-A-AAATTTACCAATTACATAGAGGAAGTATTACTTTTTAT
gi|17861 : GTGGCCATTACCTGCATAT-TT----GCTAGCACT--TGTTACA-TAAAAGTAT-ATAA--TATCAATAT-G-AAATTTGGCAATTGCATAGAGGAACTATTAACTTTTAT
gi|17862 : GCAGCCATTAAATGCATAT-TT-----ATAGTGCTGTTGCTGTA-TAACCGTAT-TTCA--TATAGGTAT-G-AAATTTGGCATTTGCATTGAGATAATATTACTTTTTAT
gi|17863 : GTAACCATACCATGCATAT-TT----TCTAACGCTGTTGCTACA-TAACTGTAT-TTAG--TATAGATAC-G-AAATTTTGCAATTGTATAGAAGAAATATTAC
gi|17864 : GTAGCAATTACATGCATAG-TT----T-TAGCACTTTTGTTAC---------------A--TATCAATCT-G-AAATTTGGCAATTGCATAGAGCAAATA
gi|17865 : GTATCCATGCTATGAATAT-TT----TCTAGCGCTGTAGCTTCA-TAACCATAT-TCAA--TATAGATAC-A-AAATGTGGCAATTGTATAGAATACAAATCACTTTTTGT
gi|17866 : GTAGCCATTACATGTATAC-TT----TCTAGTGCTGTTGCTGCG-TAACGGTAT-TCAA--TATCAATAC-G-AAACTTTACAATTTCTTAGAGGACATATTAATTTGTAT
gi|17867 : GTAGTCATTACATGCATCT-TT----T--AGTACTGTTGCTACG-CAACGGTAT-TCCA--TATCAATAT-A-ACATTTGGCATTTGCTTAGACGATATATTACTTTTCAT
gi|17868 : GTAGCCATTACATGCATAT-TT-----ATAGCGCTGATGCTACG-TAACGGTGT-TCAA--TATCAATAC-G-AAA
gi|17869 : GTAGCCATTGCATGCATTTGTT----TTTAGCACTGTTGCAACA-TAACCGTTG-TCAA---ATAGATAC-G-AAAGTGAGCAATTGCATAGAGAAAATATAACTTTTTAT
gi|17870 : GTTGCCATTACATTCATAT-TT----TTTAGAGCTGTTACTAGGGTTAGGGTATATCAA--TATCAATGT-G-AAATTTAGTAATTGCATAGAGAAAATGTTACTTTTT
gi|17871 : GTAACCATTACATGCATAT-TT----TCTAGTGCTGTTGCTACA-TAACCGTAT-TCAA--TAT
gi|17872 : GTAACCATCATATGAATAT-TT----TCTTGCACTGTTGTTTCA-TAACTGTAT-TCAA--TATAAATAC-G-AAAATTGGCAGGTGTAT-------ATATTACTTTTTATaagtctgggattt
gi|17873 : GTAACCATTACATGCATAT-TT----TCTAGAGCTGTTCCTACA-TAACAGTAT-TCAA--TATAGGTCT-G-AAATTT
gi|17874 : GCAGACATTACATGTATAT-TT----TTAAGTGCTGTTGCTATG-TAACGGTAT-TCAA--TAT
gi|17875 : GTATCCATTACATGTATA--TT----TCTAG-G-TGTTGCTA----AGC--TAT-TCAT--TATCAATAT-G-tttataaaact
gi|17876 : TAGCCATTACATGCAAAT-TT----TCTAACGCTATTGCTATG-TAACAGTAA-AAAG--TATCAATAT-G-GAATTCGGCAATTGCACAAAGGAAATATTACTTTTTAT
gi|17877 : TAGCCATTACATGTATAT-TT----TCTGGCGCTGTTGCTACA-TGACCGTGT-TCAA--CATTT-TAC-ATAAATTTACCAAT
gi|17878 : TAGCCATTACA--CATAT-AT----TCTAGCGCTGTTGCTACA-TAACCGTTT-TTA
gi|17879 : TAGCCATTACAAATATAT-TT----T-TAGCGCTGTTTCTACG-TAACTGTAT-TCAA--TCCCAATAT-A-AAATTTAGCAAATGCAGAGATTAAATATTACTTTT
gi|17880 : TAACCATACCATGCATAT-TTAATTTCTAGGGCTGTTGCCACA-AAACCGTAA--CAAAATATAGATAT-G-AAATCTGGCAATTGCAAAGGGAAAATATTACTTTTTA
gi|17881 : TAACCATTACATGCATAG-TT----TCTAGCGCTGTTGCTGCG-TAACTGTAT-TTAA--TATAGATACTA-AAATTTGCCAATTACATAAA
gi|17882 : TAGCCATTACATGCATAT-TT----TCTAGCG---------------CAGTAT-TCAA--TATCAATA----AGATTT
gi|17883 : AGCCATTACATGCGTAT-TT----CCTTGCGATGTTGCAACA-TTACCATAC-TCAG--TATAGTTAC-A-AAATTTGGCAATTGCATAGAGGAAATATTACTTTCTAT
gi|17884 : AGCCATTACATGCATAC-TT-----CTCATTCTTCTGCTACA-TAACCGTAT-TTAA--TATAGATAC-G-AATTGTGGCAATTGCATAGAGGAAATATTACTGTTTAT
gi|17885 : GCCATTGCATGTGAAT-TT----TCTAGC--TGTTGTTACG-CAACGGTAA-TCAA--TTTCAATAC-A-AAAT-------TTGCATTGAGGAAATATT
gi|17886 : CCATACCATACGTAT-TT----TCTAGCGCTGTTACTACA-TAACCGTAT-TCAG--TAT--A-AC-A-AAATTTGGCAATTGCATAGGGGAAATGTCACTTT
gi|17887 : TTACATGCATAT-GT----TTTAGCACTGTTGCTACA-TAACGGTAT-TCAA--TATTAATAT-A-AATTTTGGCAATTGCATAAAAGAAATATTAC
gi|17888 : TACATGCATTT-TT----TCTAGCACTGTTGCTATG-TAACAGTAT-TCAA--TA
gi|17889 : TAT-TT----TCTAGCACTGTTGTTACA-TTACAGTAT-TCAA--CATAGATAC-A-AAATTTGGCAATTGTAAAATGGAAAAATAACTTTTTATcagtat
gi|17890 : TAT-GT----TTTAACGTTGTTGCTACA-TAACCATAG-TCAA--TAAAGATAG-G-AAATTTGGCAATTGCATGGA--AAATATTATTAATTAT
gi|17891 : AGCACCTTTGCTACA-TAATGGTAT-TCAA--TATCAATAT-T-AATTTTTACAATTGCATAGAGGAAATATTAC
gi|17892 : TCAATAT-G-AAATTTGGCAGTTGCATTGAAGATATATTAC