lowQualScore : 11111 111111 222 1 22222222222 11 33333 22 1111 1 1 111111 11111111 1111 11111111 1 1
lowQualScore : 1 77777 1 1 4 1 0 8 333333 4 000 111 0 0 4 3 0 1 1 0 99999999999 33 2 999 0 7 00 88888 3333 11 2222 3 4 3 7 5 1 4 777 222222 4 5 66 66666666 1 1 88 0000 88888888 0 0 5 888 5
lowQualScore : . ..... . . . . . . ...... . ... ... . . . . . . . . ........... .. . ... . . .. ..... .... .. .... . . . . . . . ... ...... . . .. ........ . . .. .... ........ . . . ... .
lowQualScore : 5 99999 1 1 5 7 8 0 111111 5 999 555 9 9 2 6 8 5 0 6 99999999999 33 6 444 8 8 11 55555 3333 66 3333 6 4 9 8 4 1 4 888 888888 4 0 99 11111111 6 0 88 6666 11111111 0 1 0 888 0
consensus : GTTTG-G----NGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCCTGGGCATAGTGTT-------GT-TGA-GAC-GTN-AGTCTGATAC-TTTGGTGCA----GTTCGGAGCCTTTCG--AGTTTGGTTTTAT-ATGTA-AAGTTAATTTGTACGTGATT-ATT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTATCTTN-AATCA----AA--------CGGC-AAGTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( gi|112825 ) : GTTTG-G----TGT-GCTGCAGGACTAG-TTTTATTTATCT-AAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCGA-AAC-GTT-GGTTTGAAAC-GTT-----A----GTTCGAAACCTTTAT--AATTTGGTTTTAT-ATGTA-AAGTTAATTTGTACGTGATT-ATT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTATCTTT-AATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112821 : GTTTG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGAACTA-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCGA-AAC-GTT-GGTTTGAAAC-GTT-----A----GTTCGAAACCTTTAT--AAATTGGTTTTAT-ATGTA-AAGTTAATTTGTACGTGATT-ATT---GT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTATCTTT-AATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGAACTA-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCGA-AAC-GTT-GGTTTGAAAC-GTT-----A----GTTCGAAACCTTTAT--AATTTGGTTTTAT-ATGTA-AAATTAATT-GTACGTGATT-ATT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTATCTTA-AATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112824 : GTTTG-G----AAT-GCTGCAAAACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---T---GCTG-CAGAACTA-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCGA-AAC-GTT-TGTTTGAAAC-GTT-----A----GTTCGAAACCTTTAT--AATTTGGTTTTAT-ATGTATAAGTTAATTTGTACGTGATT-ATT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTATCTTA-AATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112827 : GTTTG-G----AAT-GCTGCAGAACTAG-TTTTATTTATTT-AAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCGA-AAC-GTT-TGTTTGAAAC-GTT-----A----GTTCGAAACCTTTAT--AATTTGGTTTTAT-ATGTA-AAGTTAATT-GTACGTGATT-ATT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTATCTTA-AATCA----AA--------TGGC-AAGTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-G----TGC-GCTGCAGGACTAG-TTTT-TTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---T---GCTG-CAGAACTT-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCGA-AAC-GTT-TGTTTGAAAC-GTT-----A----GTTCGAAACCTTTTTTTAATTTGGTTTTAT-ATGTAGAAGTTAATT-GTACGTGATT-AAT---CT------TTT--T-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTATCTTT-AATCA----AA--------CGGC-AAGTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTA-CAGAACTA-GTTTTATTTA-----AAACACAGTTCTGGGCATAGTGTTTAGTGTTGTGCGA-AAC-GTT-TGTTTGAAAT-ATT-----A----GTTTGAAATCTTTAT--ATTTTGGTTTTAT-ATGTATAAGTTAATT-GAACGTGATT-ATT----T------TTT-TA-AAACAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTACCTTG-AATCA----AA--------CGGC-AAGTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGAACTA-GTTTTATTTATTT-AAAACAGAGTTCTGGGCATAGTGTT-------GTGCG--AAC-GTT-TGTTTGAAAC-GTT-----A----GTTCGAAACCTTTAT--AA---AATTTT---------AAATTGATTT-TA---AATTGATT---CT------TTT-T
gi|112819 : GTTTG-G----TGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCCTGGGCAT
gi|112822 : GTTTG-G----TGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----TTGTTTG-GTG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCCTGGGCAT
gi|112835 : GTTTG-T----TATTGTTGCAGGACTAG-TTTTACTTAT---GAAACACAGTTCTAGG-CAT----TTGTTTAAGAT---T---GTTG-CAGGACTA-GTTTTATTAAGTT-AAAACACAGTTCTGGGCAT
gi|112832 : GTTTG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-ACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---T---GCTG-CAttgtttgagattgtt
gi|112840 : GTTCG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-ACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---T---GCTG-CA
gi|112836 : GTTTGAG----AGT-GTTGCAGGACAAG-TTTTATTAAGTT-AAAACA
gi|112846 : gtttgagattgttgcaggactagttttgttaaaacacagtcctgggcatttGTTTG-A----GAT-TTTGCAGGACTAG-TTTTATTAAGTT-AAATCACAGTTCTGGG-CAT----ATGTTcaatt
gi|112823 : agttttattaagttaaaacacagttctgggcatttGTTTG-G----TGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----
gi|112820 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G----TGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-CAT----
gi|112838 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-A----GAT-TTTGCAGGACTAG-TTTTATTAAGTT-AAATCACAGTTCTGGG-CAT----ATGTTTGAGAC---T---GTTG-CGGTACTAGGTTTTATTAACTT-AAAATACAGTCCTGGGC
gi|112831 : GTTTG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCCTGGG-TAT----TTGTTT
gi|112851 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-GAACAT-T-GCTGCAGGACTAG-TTTTATTTAGTT-AAAACAGAGTCCTGAG-CAA----GTGTTTG-tg
gi|112842 : ttgtttgtctcagacaggtgttgggacagGTTTG-GAACATG--GCTGCAGGACTAG-TTTTATTTATTT-AAAACAGAGTCATGAG-CAA----GTGTTTG-agacgtaagtctgatactttggtgcagctcgaagtttcgagtttgg
gi|112833 : agtgctccaggtcgtagtctgttgggagcctttgtttgtctcagacaggtgttgggacagGTTTG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-ACAACAGAGTCCTGGG-CAT----agacgcaagtctgatactttggt
gi|112844 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G----TGT-GCTACAGGACTAG-TTTTATTTATTT-AAAACAAAGTCCTGAG-CAA----GTGTTTG-AGG---C---G
gi|112826 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G----TGT-GCTGCAGGACTAG-TTTTATTTATTT-AAAAC--AGTCCTGGG-CAT----taagtctgatactttggt
gi|112841 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTCG-G----AGT-GCTGCAGGACTAG-TTTTATTTATTT-ACAACAGAGTCCTGGG-CAT----
gi|112853 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-GAACAT-T-GCTGCAGAACTAG-TTTTATTTATTTAAAAAAAGAGTCCTGAG-CA
gi|112852 : ttgtttgtctcagacaggtgttgggacagGTTTG-GAACAT-T-GCTGCAGAACTAG-TTTTATTTATTTAAAAAAAGAGTCCTGAG-CAagtgtatgagacgtaagtctgatactttggt
gi|112839 : ttgtttgtctcagacaggtgttgggacagGC-GCTGCAGGACTAG-TTTTATTAAGTT-AAAACACAGTTCTGAG-CAT----TTGTTTG-----------------------A-GTTTTATTAAGTT-AAAACACAGTTCTGGGCAT----TT-------GTTTGA-GAT-TTT-Gagtgtatgagacgtaagtctgatactttggt
gi|112834 : gttgagaT-GTTGCAGGACTAG-TTTTATTAAGTT-AAAACACAGTTCTGGG-CAT----TTGTTTGAGAT---T---GTTG-CAGGACTA-GTTTTG-----TT-AAAACACAGTCCTGGGCAT----TT-------GTTTGAGAGT-GTT-G
gi|112836 : gtttaagatT-GTTGCAGGACTAG-TTTTGTT------AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---T---GTTG-CAGGACAA-GTTTTATTAAGTT-AAAACACAATTcaggacaagttt
gi|112837 : gtttgagatT-GTTGCGGTACTAGGTTTTATTAACTT-AAAATACAGTCCTGGG-CCT----TTGTTTGTTAT---T---GTTG-CAGGACTA-GTTTTACTTA--T-GAAACACAGTTCTAGGCAT
gi|112847 : gtttgagacT-GCTGCAGGACTAG-TTTTATTTAGTT-AAAACAAAGTCCTGAG-CAA----GTGTTTG-
gi|112848 : tttgtttgcctcagacaggtgttgggacaggcttggaacatT-GCTGCAGAACTAG-TTTTATTTAGTT-AAAACAAAGTACTGAG-CAA----GTGTTTG-agacgtaagtctgatactttggt
gi|112849 : ttgtttgtctcagacaggtgttgggacaggcttggaacatT-GCTGCAGAACTAG-TTTCATTTAGTT-AAAACAAAGTCCTGAG-CAA----GTGTTTG-agacgtaagtctgatactttggtgcagctcggagtttcgagtttggt
gi|112854 : ttgtttgtctcagacaggtgttgggacaggcttggaacatT-GCTGCAGAACTAG-TTTTATTTAGTT-AAAACAAAGTCCTGAG-CAA----GTGTTTG-agacgtaagtctgatactttggtgcagctcggagtttcgagtttggt
gi|112850 : tgtttgcctcagacaggtgttgggacaggcttggaacatT-GCTGCAA-ACTAG-TTTTATTTAGTT-AAAACAAAGTCCTGAA-CAA----GTGTTTG-agacgtaagtctgacactttggtgcagctcggagtttcgagtttggt
gi|112845 : ttgtttgcctcagacaggtgttgggacaggcttgcaacatTGCAGGACTAG-TTTTATTTAC----------AGTTCCGGG-CATAG--TGGTTTA-GTG---T---GCTGTTTGGAC-A------------TT-AAAAT--ATTTTTAGCCA-A----------------GA-AAG-GTTCGGGTCGAAACAAAT-----A----GTTTGAAACCTTTGT--TGTTTTATCCTATCAT-TATACGTTGA-TTAAGCATGCTT--TT---CT------TTTGTTAAAACAC--GA---ATTTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC----AA--------CGGCAAAATAGTCCAATGAAAA-TCC-TATATA-CATAC---Tagacgtaagtctgatactttggtgcagctcggagtttcgagtttggt
gi|112846 : AG-TTTTATTAAGTT-AAAACACAGTTCTGGG-CAT----TTGTTTG-AGA---T---TTTG-CAGGACTA-GTTTTATTAAGTT-AAATCACAGTTCTGGGCATA-TGTT-------
gi|112842 : TTTGTTTGTCT-CAGACAG-GTGTTGGGACAG------GTTTG-GAA---CATGGCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCATGAGCA-AGTGTT----------TGA-GAC-GCA-AGTCTGATAC-TTT-----G----GT
gi|112847 : agtgctccaggtcgtagtctgttgggagccTTTGTTTGCCT-CAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGGACTA-GTTTTATTTAGTT-AAAACAAAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTT-----G----GT
gi|112851 : TTGTTTGTCT-CAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTG-CAGGACTA-GTTTTATTTAGTT-AAAACAGAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGAAG--TTTCG--AGTTTGG
gi|112853 : TTGTTTGTCT-CAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AG---T-------GTATGA-GAC-GTA-AGTCTGATAC-TTT-----G----GT
gi|112852 : TTGTTTGTCT-CAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AG---T-------GTATGA-GAC-GTA-AGTCTGATAC-TTT-----G----GT
gi|112848 : TTGTTTGTCT-CAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTAGTT-AAAACAAAGTACTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112849 : TTGTTTGTCT-CAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGAACTA-GTTTCATTTAGTT-AAAACAAAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112850 : TTGTTTGCCT-CAGACAG-GTGTTGGGACAG------GCTTG-CAACATT---GCTG-CAA-ACTA-GTTTTATTTAGTT-AAAACAAAGTCCTGAACA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112854 : TGTTTGCCT-CAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTAGTT-AAAACAAAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGACAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112832 : GTTTG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-ACAACAGAGTCCTGGGCAT
gi|112840 : GTTCG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-ACAACAGAGTCCTGGGCATttgtttagagtgctgca
gi|112836 : GTTTGAGAT---T---GTTG-CAGGACTA-GTTTTG-----TT-AAAACACAGTCCTGGGCAT----TT-------GTTTGAGAGT-GTT-Gttgtttagagtgctgca
gi|112823 : GTTTG-GTG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCCTGGGCATcaggacaagttttattaagttaaaacacaatt
gi|112823 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGCTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTAGTT-AAAACAAAGTACTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112820 : GTTTG-GTG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCCTGGGCATgtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112820 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGCTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTAGTT-AAAACAAAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGACAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112838 : GTTTG-AGA---T---TTTG-CAGGACTA-GTTTTATTAAGTT-AAATCACAGTTCTGGGCATA-TGTT----------TGA-GACTGTT-Ggtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112831 : GTTTG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAACAGAGTCCTGGGTAT-TTGTT-------TTGcggtactaggttttattaacttaaaatacagtcctgggc
gi|112831 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-GAACATT---GCTG-CAGGACTA-GTTTTATTTAGTT-AAAACAGAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGAAG--TTTCG--AGTTTGG
gi|112833 : GTTTG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-ACAACAGAGTCCTGGGCATagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112833 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AG---T-------GTATGA-GAC-GTA-AGTCTGATAC-TTT-----G----GT
gi|112844 : GTTTG-GTG---T---GCTA-CAGGACTA-GTTTTATTTATTT-AAAACAAAGTCCTGAGCA-AGTGTT----------TGA-GGC-GTA-AGTCTGATAC-TTT-----G----GTgcagctcggagtttcgagtttggagtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112826 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-GTG---T---GCTG-CAGGACTA-GTTTTATTTATTT-AAAAC--AGTCCTGGGCAT
gi|112826 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGCTTG-GAACATT---GCTG-CAGAACTA-GTTTCATTTAGTT-AAAACAAAGTCCTGAGCA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGT
gi|112841 : GTTCG-GAG---T---GCTG-CAGGACTA-GTTTTATTTATTT-ACAACAGAGTCCTGGGCATgtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112841 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-GAACATT---GCTG-CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AG---T-------GTATGA-GAC-GTA-AGTCTGATAC-TTT-----G----GT
gi|112844 : ---T---GCTG-CAA-ACTA-GTTTTATTTAGTT-AAAACAAAGTCCTGAACA-AGTGTT----------TGA-GAC-GTA-AGTCTGATAC-TTTGGTGCA----GCTCGGAG--TTTCG--AGTTTGGTgcagctcggagtttcgagttcggagtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112846 : A-GTTTTATTAAGTT-AAAACACAGTTCTGGGCAT----TT-------GTTTGA-GAT-TTT-Ggtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112843 : ATAGTGTT-------GAAC---AACAGTT-GGTTC--AAC-CCT-----ACAAGGTTTGAAACATT-AT--A--CTG----TAT-AT-----AGTTAATTGGTA--TGATC-ATTTGTCTGTATGATTT-CT-AAATATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATTcaggactagttttattaagttaaatcacagttctgggcatatgtt
gi|112855 : agtgttccagacatacagttttggtttaagtttgaaacaagtctcaagcgtatgctgtccagacacgttgtctgaacagctggtctcattattaaaATCATTTATCTAATCATTG--------G--AACGAATCATCG-GCAAAGTAGCCCAAGGAAAATTAT
gi|112855 : ATCATTTATC--T-AATCATTGGAACGAATCATCGGCAAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTATatatatatatatgaattattactagctgtat
Alignments
lowQualScore : 1 222 1 333333333 22222222222222222222222222222222222222 22 1 1 111111111 111111 11111111 11111111
lowQualScore : 5 1 1 4 0 99999 6 444 111 2222 1 1 555 2 33 4 5555555555 222222222 2222 88888888888888 1 3333 44444444444444444444444444444444444444 333 11 4444 1 22 4 6 4 3 4 4 666666666 777 111111 4 4 66 66666666 1 4 2 66666666 9999 4 4 4 777
lowQualScore : . . . . . ..... . ... ... .... . . ... . .. . .......... ......... .... .............. . .... ...................................... ... .. .... . .. . . . . . . ......... ... ...... . . .. ........ . . . ........ .... . . . ...
lowQualScore : 7 0 7 4 9 11111 3 555 888 6666 0 1 999 1 22 1 6666666666 777777777 8888 77777777777777 0 1111 66666666666666666666666666666666666666 222 66 4444 8 55 0 0 0 0 0 0 000000000 000 555555 0 4 11 11111111 7 4 6 11111111 4444 4 4 4 888
consensus : GTTTG-GAGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--NTT-AAAACA-GAGTCCTGGGCATAGT----------GTT----G-T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AGCCTTTCG--AG-TTTGG--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( family-561 ) : GTTTG-GNGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTCCTGGGCATAGT----------GTT----G-T-TG----AGAC--------------GTNAGTCTGATACTT----T-----------GGTG--------C--------------AGTTCGG---AGCCTTTCG--AG-TTTGG--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-GAGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGA---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----AAAC--------------GTTGGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTAT--AA-TTTGG--TTTTATA-TGTA-A-AATTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112819 : GTTTG-GTGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTCCTGGGCAT
gi|112820 : GCTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGACACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112820 : GTTTG-GTGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112821 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-GAGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGA---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----AAAC--------------GTTGGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTAT--AA-ATTGG--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---GT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112822 : GTTTG-GTGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GTG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTCCTGGGCAT
gi|112823 : GCTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTACTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112823 : GTTTG-GTGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112824 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-GAATGCTGCAAAACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---T---GCTGCAGA---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----AAAC--------------GTTTGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTAT--AA-TTTGG--TTTTATA-TGTATA-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112825 : GTTTG-GTGTGCTGCAGGACTAG-TTTTATTTATCTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----AAAC--------------GTTGGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTAT--AA-TTTGG--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112826 : GCTTG-GAACATT---GCTGCAGA---ACTA-GTTTCA-TTTA--GTT-AAAACA-AAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112826 : GTTTG-GTGTGCTGCAGGACTAG-TTTTATTTATTTAAAAC--AGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112827 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-GAATGCTGCAGAACTAG-TTTTATTTATTTAAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----AAAC--------------GTTTGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTAT--AA-TTTGG--TTTTATA-TGTA-A-AGTTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTAAATCA--------AA----TGGC-AA-GTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-GTGCGCTGCAGGACTAG-TTTT-TTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---T---GCTGCAGA---ACTT-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----AAAC--------------GTTTGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTTTTTAA-TTTGG--TTTTATA-TGTAGA-AGTTAATT-GTACGT-GATT-A---------AT---CT------TTT--TAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-GAGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTACAGA---ACTA-GTTTTA-TTTA-------AAACA-CAGTTCTGGGCATAGT----------GTTTAGTG-T-TGTGCGAAAC--------------GTTTGTTTGAAATAT----T--------------------------------------AGTTTGA---AATCTTTAT--AT-TTTGG--TTTTATA-TGTATA-AGTTAATT-GAACGT-GATT-A---------TT----T------TTT-TAAAA-CAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTAC-CTTGAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-GAGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---T---GCTGCAGA---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTTCTGGGCATAGT----------GTT----G-TGCG----A-AC--------------GTTTGTTTGAAACGT----T--------------------------------------AGTTCGA---AACCTTTAT--AA----AA--TTTT---------A-AATTGATTT-TA----AATTGA---------TT---CT------TTT-T
gi|112831 : GTTTG-GAACATT---GCTGCAGG---ACTA-GTTTTA-TTTA--GTT-AAAACA-GAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGA---AG--TTTCG--AG-TTTGG--
gi|112831 : GTTTG-GAGTGCTGCAGGACTAG-TTTTATTTATTTAAAACAGAGTCCTGGG-TAT----TTGTTTagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112832 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-GAGTGCTGCAGGACTAG-TTTTATTTATTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---T---GCTGCAtg
gi|112833 : GTTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--TTT-AAAAAAAGAGTCCTGAGCA-AGT----------GTA--------TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--
gi|112833 : GTTTG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-ACAACA-GAGTCCTGGGCATagtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112834 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaTGTTGCAGGACTAG-TTTTATTAAGTTAAAACACAGTTCTGGG-CAT----TTGTTTGAGAT---T---GTTGCAGG---ACTA-GTTTTG--------TT-AAAACA-CAGTCCTGGGCAT--------------TT----GTT-TG----AGA
gi|112834 : gtttaagatGTTTGAGATTGTTGCAGGACTAG-TTTTGTT-----AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---T---GTTGCAGG---ACAA-GTTTgtgttgcaggacaagttt
gi|112835 : gtttaagattgttgcaggactagttttattaagttaaaacacagttctgggcatttTGTTGCAGGACTAG-TTTTACTTAT--GAAACACAGTTCTAGG-CAT----TTGTTTAAGAT---T---GTTGCAGG---ACTA-GTTTTA-TTAA--GTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112836 : gtttgttatGTTTGAGATTGTTGCAGGACTAG-TTTTGTT-----AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---T---GTTGCAGG---ACAA-GTTTTA-TTAA--GTT-AAAACA-ttgtt
gi|112837 : GTTTGAGACTGTTGCGGTACTAGGTTTTATTAACTTAAAATACAGTCCTGGG-CCT----TTGTTTGTTAT---T---GTTGCAGG---ACTA-GTTTTA-CTTA----T-GAAACA-CAGTTCTAGGCATcaatt
gi|112838 : GTTTG-AGATTTTGCAGGACTAG-TTTTATTAAGTTAAATCACAGTTCTGGG-CAT----ATGTTTGAGAC---T---GTTGCGGT---ACTAGGTTTTA-TTAA--CTT-AAAATA-CAGTCCTGGGC
gi|112839 : GTTGA-GAGCGCTGCAGGACTAG-TTTTATTAAGTTAAAACACAGTTCTGAG-CAT----TTGTTTG-------------------------A-GTTTTA-TTAA--GTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112840 : GTTCG-GAGTGCTGCAGGACTAG-TTTTATTTATTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---T---GCTGCAttttg
gi|112841 : GTTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--TTT-AAAAAAAGAGTCCTGAGCA-AGT----------GTA--------TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTCGG--
gi|112841 : GTTCG-GAG---T---GCTGCAGG---ACTA-GTTTTA-TTTA--TTT-ACAACA-GAGTCCTGGGCATagtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112842 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaTTTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAA---CATGGCTGCAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-GAGTCATGAGCA-AGT----------GT-------T-TG----AGAC--------------GCAAGTCTGATACTT----T-----------GGT
gi|112843 : agtgctccaggtcgtagtctgttgggagccAG---T---GTTCCAGACATAC-A-GTTTTGGTTTAAGTTT-GAAACA--AGTCTCAAGCGTA-T----------GCT----G-T-CC----AGACACGTTGTCTGAACAGCTGGTCTCATTATTAAAAT-----------AGTGTTGAACAAC--------------AGTT-GGTTCAACCCTACA--AGGTTTGAAACATTATACTGTATATAGTTAATTGGTA--T-GATC-A---------TTTGTCTGTATGATTT-CTAAA-TATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATT
gi|112844 : ---T---GCTGCAA----ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTCCTGAACA-AGT----------GTT--------TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112844 : GTTTG-GTG---T---GCTACAGG---ACTA-GTTTTA-TTTA--TTT-AAAACA-AAGTCCTGAGCA-AGT----------GT-------T-TG----AGGC--------------GTAAGTCTGATACTT----T-----------GGTgtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112845 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaTGCAGG---ACTA-GTTTTA-TTTA--C-----------AGTTCCGGGCATAGTGGTTTAGTGTGCT----G-T-TT----GGAC--------------ATTAA---AATATTT----TTAGCCAAGAAAGGTT--------CGGGTCGAAACAAATAGTTTGA---AACCTTT-----G-TT--G--TTTTATC-C-TA-----TCA--TTATACGTTGATT-AAGCATGCTTTT---CT------TTTGTTAAAACAC--GAAT---TTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC--------AA----CGGCAAA-ATAGTCCAATGAAAA-TCC-TATATA-CATAC---
gi|112846 : AG-TTTTATTAAGTTAAAACACAGTTCTGGG-CAT----TTGTTTG-AGA---T---TTTGCAGG---ACTA-GTTTTA-TTAA--GTT-AAATCA-CAGTTCTGGGCATA-T----------GTT----
gi|112847 : TTTGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTGCAGG---ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGT
gi|112848 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTACTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112849 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTGCAGA---ACTA-GTTTCA-TTTA--GTT-AAAACA-AAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112850 : TTGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-CAACATT---GCTGCAA----ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTCCTGAACA-AGT----------GTT--------TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112851 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTGCAGG---ACTA-GTTTTA-TTTA--GTT-AAAACA-GAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGTG--------C--------------AGCTCGA---AG--TTTCG--AG-TTTGG--
gi|112852 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--TTTAAAAAAA-GAGTCCTGAGCA-AGT----------GT-------A-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGT
gi|112853 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--TTTAAAAAAA-GAGTCCTGAGCA-AGT----------GT-------A-TG----AGAC--------------GTAAGTCTGATACTT----T-----------GGT
gi|112854 : TGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTGCAGA---ACTA-GTTTTA-TTTA--GTT-AAAACA-AAGTCCTGAGCA-AGT----------GT-------T-TG----AGAC--------------GTAAGTCTGACACTT----T-----------GGTG--------C--------------AGCTCGG---AG--TTTCG--AG-TTTGG--T
gi|112855 : ATCATTTAT-CT--AATCATTGGAACGAATCATCGGC-AAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTAT
Alignments
lowQualScore : 1 11111 2222 1 333333333 22 1 1 111111111 111111 11111111 11111111
lowQualScore : 6 1 1 1 777777777777 3 0 00000 6 6666 111 1 1 1 111 1 3 2 2 7 555555555 2222 0 999 0 33 4444 4 6 4 3 4 4 666666666 777 111111 4 4 66 66666666 4 2 66666666 9999 4 4 4 777
lowQualScore : . . . . ............ . . ..... . .... ... . . . ... . . . . . ......... .... . ... . .. .... . . . . . . ......... ... ...... . . .. ........ . . ........ .... . . . ...
lowQualScore : 4 5 5 4 111111111111 2 0 00000 5 1111 888 1 3 1 999 1 2 3 3 0 888888888 9999 2 999 3 66 8888 0 0 0 0 0 0 000000000 000 555555 0 4 11 11111111 4 6 11111111 4444 4 4 4 888
consensus : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAGC--T---GCTG-CAGGAC-T---A-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAGTGTT----G-T-TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAGCCTTTCG--AGTTTGGTTTTATA-TGTA-A-AGTTAATTTGTACG-TGATT-A---------TT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( family-561 ) : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGGAC-T---A-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAGTGTT----G-T-TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAGCCTTTCG--AGTTTGGTTTTATA-TGTA-A-AGTTAATTTGTACG-TGATT-A---------TT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGAAC-T---A-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----AAACGTTGGTTTGAAACGTTAGT-----TCGAAACCTTTAT--AATTTGGTTTTATA-TGTA-A-AATTAATT-GTACG-TGATT-A---------TT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112819 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGGAC-T---A-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112820 : GCTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AGTGT-------T-TG----AGACGTAAGTCTGACACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112820 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112821 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGAAC-T---A-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----AAACGTTGGTTTGAAACGTTAGT-----TCGAAACCTTTAT--AAATTGGTTTTATA-TGTA-A-AGTTAATTTGTACG-TGATT-A---------TT---GT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112822 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GTG---T---GCTG-CAGGAC-T---A-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112823 : GCTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AGTGTT--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112823 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112824 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAAAAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---T---GCTG-CAGAAC-T---A-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----AAACGTTTGTTTGAAACGTTAGT-----TCGAAACCTTTAT--AATTTGGTTTTATA-TGTATA-AGTTAATTTGTACG-TGATT-A---------TT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112825 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATCTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGGAC-T---A-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----AAACGTTGGTTTGAAACGTTAGT-----TCGAAACCTTTAT--AATTTGGTTTTATA-TGTA-A-AGTTAATTTGTACG-TGATT-A---------TT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112826 : GCTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AGTGTT--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112826 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAAC--AGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112827 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAGAAC-TAG-T------------TTTATTTATTTAAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GAG---T---GCTG-CAGGAC-T---A-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----AAACGTTTGTTTGAAACGTTAGT-----TCGAAACCTTTAT--AATTTGGTTTTATA-TGTA-A-AGTTAATT-GTACG-TGATT-A---------TT---CT------TTT-TT-AAACAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTAAATCA--------AA----TGGC-AA-GTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-G-TGCGCTGCAGGAC-TAG-T------------TTT-TTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---T---GCTG-CAGAAC-T---T-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----AAACGTTTGTTTGAAACGTTAGT-----TCGAAACCTTTTTTTAATTTGGTTTTATA-TGTAGA-AGTTAATT-GTACG-TGATT-A---------AT---CT------TTT--T-AAACAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---T---GCTA-CAGAAC-T---A-GTTTTATTTA-----AAACA-CAGTTCTGGGCATAGTGTTTAGTG-T-TGTGCGAAACGTTTGTTTGAAATATTAGT-----TTGAAATCTTTAT--ATTTTGGTTTTATA-TGTATA-AGTTAATT-GAACG-TGATT-A---------TT----T------TTT-TA-AAACAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTAC-CTTGAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---T---GCTG-CAGAAC-T---A-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAGTGTT----G-TGCG----A-ACGTTTGTTTGAAACGTT-----AGTTCGAAACCTTTAT--AA---AATTTT---------A-AATTGATTT-TA----AATTGA---------TT---CT------TTT-T
gi|112831 : GTTTG-GAACATT---GCTG-CAGGAC-T---A-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AGTGT-------T-TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGAAG--TTTCG--AGTTTGG
gi|112831 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-TAT----TTGTTTagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112832 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---T---GCTG-CAtg
gi|112833 : GTTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AGTGTA--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGG
gi|112833 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112834 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTAAG-ATTGTTGCAGGAC-TAG-T------------TTTATTAAGTTAAAACACAGTTCTGGG-CAT----TTGTTTGAGAT---T---GTTG-CAGGAC-T---A-GTTTT-----GTT-AAAACA-CAGTCCTGGGCAT----TT----GTT-TG----AGA
gi|112834 : GTTTGAG-ATTGTTGCAGGAC-TAG-T------------TTTGTT-----AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---T---GTTG-CAGGAC-A---A-GTTTgtgttgcaggacaagttt
gi|112835 : gtttaagattgttgcaggactagttttattaagttaaaacacagttctgggcatttGTTTG-TTATTGTTGCAGGAC-TAG-T------------TTTACTTAT--GAAACACAGTTCTAGG-CAT----TTGTTTAAGAT---T---GTTG-CAGGAC-T---A-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT----TT----GTT-TG----AGA
gi|112836 : GTTTGAG-ATTGTTGCAGGAC-TAG-T------------TTTGTT-----AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---T---GTTG-CAGGAC-A---A-GTTTTATTAAGTT-AAAACA-ttgtt
gi|112837 : GTTTGAG-ACTGTTGCGGTAC-TAGGT------------TTTATTAACTTAAAATACAGTCCTGGG-CCT----TTGTTTGTTAT---T---GTTG-CAGGAC-T---A-GTTTTACTTA--T-GAAACA-CAGTTCTAGGCATcaatt
gi|112838 : GTTTG-A-GATTTTGCAGGAC-TAG-T------------TTTATTAAGTTAAATCACAGTTCTGGG-CAT----ATGTTTGAGAC---T---GTTG-CGGTAC-T---AGGTTTTATTAACTT-AAAATA-CAGTCCTGGGC
gi|112839 : GTTGA-G-AGCGCTGCAGGAC-TAG-T------------TTTATTAAGTTAAAACACAGTTCTGAG-CAT----TTGTTTG---------------------------A-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT----TT----GTT-TG----AGA
gi|112840 : GTTCG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---T---GCTG-CAttttg
gi|112841 : GTTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AGTGTA--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTCGG
gi|112841 : GTTCG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112842 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcga-AGTGCTCCAGGTCGTAG-TCTGTTGGGAGCCTTTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAA---CATGGCTG-CAGGAC-T---A-GTTTTATTTATTT-AAAACA-GAGTCATGAGCA-AGTGT-------T-TG----AGACGCAAGTCTGATACTTTGGT
gi|112843 : TTATACTGTATATAGTTAATTGGTA---TGATC-A---------TTTGTCTGTATGATTT-CT-AAATATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATT
gi|112844 : agtgttccagacatacagttttggtttaagtttgaaacaagtctcaagcgtatgctgtccagacacgttgtctgaacagctggtctcattattaaaatagtgttgaacaacagttggttcaaccctacaaggtttgaaaca---T---GCTG-CAA-AC-T---A-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AGTGTT--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112844 : GTTTG-GTG---T---GCTA-CAGGAC-T---A-GTTTTATTTATTT-AAAACA-AAGTCCTGAGCA-AGTGT-------T-TG----AGGCGTAAGTCTGATACTTTGGTgtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112845 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaTGCAGGAC-TAG-T------------TTTATTTAC---------AGTTCCGGG-CATAG--TGGTTTA-GTG---T---GCTGTTTGGACATTAAA-ATATT-TTTAGCC-AAGAAA-G-GTTC-GG--------------G-T-CG----AAAC--AA-----ATAGTTT----------GAAACCTTT-----GTT--GTTTTAT--CCTA-----TCA--TTATACGTTGATT-AAGCATGCTTTT---CT------TTTGTTAAAACAC--GA---ATTTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC--------AA----CGGCAAA-ATAGTCCAATGAAAA-TCC-TATATA-CATAC---
gi|112846 : AG-T------------TTTATTAAGTTAAAACACAGTTCTGGG-CAT----TTGTTTG-AGA---T---TTTG-CAGGAC-T---A-GTTTTATTAAGTT-AAATCA-CAGTTCTGGGCATA-TGTT----
gi|112847 : ------------TTTGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGGAC-T---A-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AGTGT-------T-TG----AGACGTAAGTCTGATACTTTGGT
gi|112848 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AGTGTT--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112849 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AGTGTT--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112850 : TTGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-CAACATT---GCTG-CAA-AC-T---A-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AGTGTT--------TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112851 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTG-CAGGAC-T---A-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AGTGT-------T-TG----AGACGTAAGTCTGATACTTTGGTGCAGCTCGAAG--TTTCG--AGTTTGG
gi|112852 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AGTGT-------A-TG----AGACGTAAGTCTGATACTTTGGT
gi|112853 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AGTGT-------A-TG----AGACGTAAGTCTGATACTTTGGT
gi|112854 : TGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATT---GCTG-CAGAAC-T---A-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AGTGT-------T-TG----AGACGTAAGTCTGACACTTTGGTGCAGCTCGGAG--TTTCG--AGTTTGGT
gi|112855 : ATCATTTAT-CT--AATCATTGGAACGAATCATCGGC-AAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTAT
Alignments
lowQualScore : 1 333 1 333333333 2222 1 1 111111111 111111 11111111 11111111
lowQualScore : 6 1 1 1 777777777777 3 0 99999 2 555 1 1 1 3 2 22 6 5555555555 444444444 2222 1 0 77777777777 9 0 7777 22 22 333 22 4 6 4 3 4 4 666666666 777 111111 4 4 66 66666666 4 2 9999 66666666 8 4 777
lowQualScore : . . . . ............ . . ..... . ... . . . . . .. . .......... ......... .... . . ........... . . .... .. .. ... .. . . . . . . ......... ... ...... . . .. ........ . . .... ........ . . ...
lowQualScore : 4 5 5 5 333333333333 6 3 00000 2 444 1 3 1 2 3 99 2 8888888888 999999999 9999 5 2 33333333333 0 3 4444 66 66 333 66 0 0 0 0 0 0 000000000 000 555555 0 4 11 11111111 4 6 4444 11111111 9 4 888
consensus : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAGCATTG-CTGCAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--GTTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA----AA--------CGGC-AAGTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( family-561 ) : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAGC--TG-CTGCAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--GTTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA----AA--------CGGC-AAGTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---TG-CTGCAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--GTTTTATA-TGTA-A-AATTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112819 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---TG-CTGCAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112820 : GCTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGACACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112820 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112821 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---TG-CTGCAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---ATTG--GTTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---GT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112822 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GTG---TG-CTGCAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112823 : GCTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112823 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112824 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAAAAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---TG-CTGCAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--GTTTTATA-TGTATA-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112825 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATCTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---TG-CTGCAGGACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--GTTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA----AA--------CGGC-AAGTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112826 : GCTTG-GAACATTG-CTGCAGAACTA-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112826 : GTTTG-G-TGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAAC--AGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112827 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAGAAC-TAG-T------------TTTATTTATTTAAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GAG---TG-CTGCAGGACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--GTTTTATA-TGTA-A-AGTTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTAAATCA----AA--------TGGC-AAGTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-G-TGCGCTGCAGGAC-TAG-T------------TTT-TTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GAG---TG-CTGCAGAACTT-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTTTTTAA---TTTG--GTTTTATA-TGTAGA-AGTTAATT-GTACGT-GATT-A---------AT---CT------TTT--TAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTTAATCA----AA--------CGGC-AAGTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GAG---TG-CTACAGAACTA-GTTTTATTTA-----AAACA-CAGTTCTGGGCATAG----------TGTTTAGTG-T-TGTGCGAAACGT-TTGTTTGAAATATT-----------AGT-----TTGAAATC--T--TTAT--AT---TTTG--GTTTTATA-TGTATA-AGTTAATT-GAACGT-GATT-A---------TT----T------TTT-TAAAA-CAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTAC-CTTGAATCA----AA--------CGGC-AAGTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GAG---TG-CTGCAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----A-ACGT-TTGTTTGAAACGTT----------------AGTTCGAAACC--T--TTAT--AA------A--ATTTT---------A-AATTGATTT-TA----AATTGA---------TT---CT------TTT-T
gi|112831 : GTTTG-GAACATTG-CTGCAGGACTA-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGAAG----T--TTCG--AG---TTTG--G
gi|112831 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTAAAACAGAGTCCTGGG-TAT----TTGTTTagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112832 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---TG-CTGCAtg
gi|112833 : GTTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AG----------TGTA--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G
gi|112833 : GTTTG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112834 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTAAG-ATTGTTGCAGGAC-TAG-T------------TTTATTAAGTTAAAACACAGTTCTGGG-CAT----TTGTTTG-AGAT--TG-TTGCAGGACTA-GTTTT-----GTT-AAAACA-CAGTCCTGGGCAT--------------TT----GTT-TG----AGA
gi|112834 : GTTTGAG-ATTGTTGCAGGAC-TAG-T------------TTTGTT-----AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---TG-TTGCAGGACAA-GTTTgtgttgcaggacaagttt
gi|112835 : gtttaagattgttgcaggactagttttattaagttaaaacacagttctgggcatttGTTTG-TTATTGTTGCAGGAC-TAG-T------------TTTACTTAT--GAAACACAGTTCTAGG-CAT----TTGTTTA-AGAT--TG-TTGCAGGACTA-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112836 : GTTTGAG-ATTGTTGCAGGAC-TAG-T------------TTTGTT-----AAAACACAGTCCTGGG-CAT----TTGTTTGAGAG---TG-TTGCAGGACAA-GTTTTATTAAGTT-AAAACA-ttgtt
gi|112837 : GTTTGAG-ACTGTTGCGGTAC-TAGGT------------TTTATTAACTTAAAATACAGTCCTGGG-CCT----TTGTTTG-TTAT--TG-TTGCAGGACTA-GTTTTACTTA--T-GAAACA-CAGTTCTAGGCATcaatt
gi|112838 : GTTTG-A-GATTTTGCAGGAC-TAG-T------------TTTATTAAGTTAAATCACAGTTCTGGG-CAT----ATGTTTG-AGAC--TG-TTGCGGTACTAGGTTTTATTAACTT-AAAATA-CAGTCCTGGGC
gi|112839 : GTTGA-G-AGCGCTGCAGGAC-TAG-T------------TTTATTAAGTTAAAACACAGTTCTGAG-CAT----TTGTTTG--------------------A-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112840 : GTTCG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GAG---TG-CTGCAttttg
gi|112841 : GTTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AG----------TGTA--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTCG--G
gi|112841 : GTTCG-G-AGTGCTGCAGGAC-TAG-T------------TTTATTTATTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112842 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcga-AGTGCTCCAGGTCGTAG-TCTGTTGGGAGCCTTTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACA-TGGCTGCAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCATGAGCA-AG----------TGT-------T-TG----AGACGC-AAGTCTGATACTTT-----------GGT
gi|112843 : TTATACTGTATATAGTTAATTGGTA--T-GATC-A---------TTTGTCTGTATGATTT-CTAAA-TATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATT
gi|112844 : agtgttccagacatacagttttggtttaagtttgaaacaagtctcaagcgtatgctgtccagacacgttgtctgaacagctggtctcattattaaaatagtgttgaacaacagttggttcaaccctacaaggtttgaaaca--TG-CTGCAA-ACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112844 : GTTTG-GTG---TG-CTACAGGACTA-GTTTTATTTATTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGGCGT-AAGTCTGATACTTT-----------GGTgtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112845 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaTGCAGGACTA-GTTTTATTTAC-----------AGTTCCGGGCATAGTGGTTTAGTGTGCT----G-T-TT----GGACATTAAA----ATATTTTTAGCCAAGAAAGGTTCGGGTCGAAACAAATAGTTTG--AAACCTTTGTTGTTTTATC-C-TA-----TCA--TTATACGTTGATT-AAGCATGCTTTT---CT------TTTGTTAAAACAC--GAAT---TTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC----AA--------CGGCAAAATAGTCCAATGAAAA-TCC-TATATA-CATAC---
gi|112846 : AG-T------------TTTATTAAGTTAAAACACAGTTCTGGG-CAT----TTGTTTG--AGA--TT-TTGCAGGACTA-GTTTTATTAAGTT-AAATCA-CAGTTCTGGGCATA-----------TGTT----
gi|112847 : ------------TTTGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATTG-CTGCAGGACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112848 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112849 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATTG-CTGCAGAACTA-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112850 : TTGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-CAACATTG-CTGCAA-ACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112851 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATTG-CTGCAGGACTA-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGAAG----T--TTCG--AG---TTTG--G
gi|112852 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AG----------TGT-------A-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112853 : TTGTTTGTCTCAGACAG-GTGTTGGGACAG------GTTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AG----------TGT-------A-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112854 : TGTTTGCCTCAGACAG-GTGTTGGGACAG------GCTTG-GAACATTG-CTGCAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGACACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--GT
gi|112855 : ATCATTTAT-CT--AATCATTGGAACGAATCATCGGCAAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTAT
Alignments
lowQualScore : 1 11111 222 1 333333333 11111 2222 1 1 111111111 111111 11111111 11111111
lowQualScore : 6 1 222 1 1 777777777777 1 11 3 0 00000 2 1 000 1 11 2 1 3 2 33 5 5555555555 444444444 2222 1 0 77777777777 11111 5555 22 22 555 22 22 4 6 4 3 4 4 666666666 777 111111 4 4 66 66666666 4 2 66666666 9999 4 4 4 777
lowQualScore : . . ... . . ............ . .. . . ..... . . ... . .. . . . . .. . .......... ......... .... . . ........... ..... .... .. .. ... .. .. . . . . . . ......... ... ...... . . .. ........ . . ........ .... . . . ...
lowQualScore : 4 5 666 5 4 111111111111 1 55 2 0 99999 2 1 444 1 44 3 1 2 2 22 5 6666666666 444444444 8888 5 7 00000000000 11111 3333 55 55 000 55 55 0 0 0 0 0 0 000000000 000 555555 0 4 11 11111111 4 6 11111111 4444 4 4 4 888
consensus : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( family-561 ) : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTA-A-AATTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112819 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112820 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGACACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112820 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112821 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---ATTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---GT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112822 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GT-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112823 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112823 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112824 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAAA---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTATA-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112825 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TCTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112826 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112826 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAAC--AGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112827 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAGA---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTA-A-AGTTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTAAATCA--------AA----TGGC-AA-GTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-G-TGCGCTGCAGG---AC-TAG-T------------TTT--TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GA-G---TG-CTG--CAGAACTT-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTTTTTAA---TTTG--G--TTTTATA-TGTAGA-AGTTAATT-GTACGT-GATT-A---------AT---CT------TTT--TAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTA--CAGAACTA-GTTTTATTTA-----AAACA-CAGTTCTGGGCATAG----------TGTTTAGTG-T-TGTGCGAAACGT-TTGTTTGAAATATT-----------AGT-----TTGAAATC--T--TTAT--AT---TTTG--G--TTTTATA-TGTATA-AGTTAATT-GAACGT-GATT-A---------TT----T------TTT-TAAAA-CAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTAC-CTTGAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----A-ACGT-TTGTTTGAAACGTT----------------AGTTCGAAACC--T--TTAT--AA------A--A--TTTT---------A-AATTGATTT-TA----AATTGA---------TT---CT------TTT-T
gi|112831 : GTTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGAAG----T--TTCG--AG---TTTG--G--
gi|112831 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-TAT----TTGTTTagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112832 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GA-G---TG-CTG--CAtg
gi|112833 : GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AG----------TGTA--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--
gi|112833 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112834 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTAAG-ATTGTTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGGG-CAT----TTGTTT--GA-G-ATTG-TTG--CAGGACTA-GTTTT-----GTT-AAAACA-CAGTCCTGGGCAT--------------TT----GTT-TG----AGA
gi|112834 : GTTTGAG-ATTGTTGCAGG---AC-TAG-T------------TTTG-TT-------AAAACACAGTCCTGGG-CAT----TTGTTTGAGA-G---TG-TTG--CAGGACAA-GTTTgtgttgcaggacaagttt
gi|112835 : gtttaagattgttgcaggactagttttattaagttaaaacacagttctgggcatttGTTTG-TTATTGTTGCAGG---AC-TAG-T------------TTTA-CTTA--T--GAAACACAGTTCTAGG-CAT----TTGTTTA--A-G-ATTG-TTG--CAGGACTA-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112836 : GTTTGAG-ATTGTTGCAGG---AC-TAG-T------------TTTG-TT-------AAAACACAGTCCTGGG-CAT----TTGTTTGAGA-G---TG-TTG--CAGGACAA-GTTTTATTAAGTT-AAAACA-ttgtt
gi|112837 : GTTTGAG-ACTGTTGCGGT---AC-TAGGT------------TTTA-TTAA--CTTAAAATACAGTCCTGGG-CCT----TTGTTTG----TTATTG-TTG--CAGGACTA-GTTTTACTTA--T-GAAACA-CAGTTCTAGGCATcaatt
gi|112838 : GTTTG-A-GATTTTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAATCACAGTTCTGGG-CAT----ATGTTT--GA-G-ACTG-TTG--CGGTACTAGGTTTTATTAACTT-AAAATA-CAGTCCTGGGC
gi|112839 : GTTGA-G-AGCGCTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGAG-CAT----TTGTTTG-----------------------A-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112840 : GTTCG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GA-G---TG-CTG--CAttttg
gi|112841 : GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AG----------TGTA--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTCG--G--
gi|112841 : GTTCG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112842 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcga-AGTGCTCCAGG---TCGTAG-TCTGTTGGGAGCCTTTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATGG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCATGAGCA-AG----------TGT-------T-TG----AGACGC-AAGTCTGATACTTT-----------GGT
gi|112843 : -AGTGTTCCAGACATAC--AG-T------------TTTGGTTTAAGTTTGAAACA-AGTCTCAAG-CGTATG-CTGTCCA-GACACGTTGTCTGAACAG--CTG-GTCTCATT--ATT-AAAA---------------TAG----------TGTT----G----------AACAA-CAGT---------T-----------GGT-----TC--AACC--C--TACA--AGG--TTTG--AAACATTATACTGTATATAGTTAATTGGTA--T-GATC-A---------TTTGTCTGTATGATTT-CTAAA-TATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATT
gi|112844 : TG-CTG--CAA-ACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112844 : GTTTG-GT-G---TG-CTA--CAGGACTA-GTTTTATTTATTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGGCGT-AAGTCTGATACTTT-----------GGTgtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112845 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaTG--CAGGACTA-GTTTTATTTAC-----------AGTTCCGGGCATAGTGGTTTAGTGTGCT----G-T-TT----GGACATTAAA----ATATTTTTAGCCAAGAAAGGTTCGGGTCGAAACAAATAGTTTG--AAACCTTTGTTG--TTTTATC-C-TA-----TCA--TTATACGTTGATT-AAGCATGCTTTT---CT------TTTGTTAAAACAC--GAAT---TTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC--------AA----CGGCAAA-ATAGTCCAATGAAAA-TCC-TATATA-CATAC---
gi|112846 : AG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGGG-CAT----TTGTTTG--A-G-ATT--TTG--CAGGACTA-GTTTTATTAAGTT-AAATCA-CAGTTCTGGGCATA-----------TGTT----
gi|112847 : ------------TTTG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112848 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112849 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112850 : TTG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-CA-ACATTG-CTG--CAA-ACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112851 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGAAG----T--TTCG--AG---TTTG--G--
gi|112852 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AG----------TGT-------A-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112853 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AG----------TGT-------A-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112854 : TG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGACACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112855 : ATCATTTAT-CT--AATCATTGGAACGAATCATCGGC-AAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTAT
Alignments
lowQualScore : 1 11111 222 1 333333333 11111 2222 1 1 111111111 111111 11111111 11111111
lowQualScore : 6 1 222 1 1 777777777777 1 11 3 0 00000 2 1 000 1 11 2 1 3 2 33 5 5555555555 444444444 2222 1 0 77777777777 11111 5555 22 22 555 22 22 4 6 4 3 4 4 666666666 777 111111 4 4 66 66666666 4 2 66666666 9999 4 4 4 777
lowQualScore : . . ... . . ............ . .. . . ..... . . ... . .. . . . . .. . .......... ......... .... . . ........... ..... .... .. .. ... .. .. . . . . . . ......... ... ...... . . .. ........ . . ........ .... . . . ...
lowQualScore : 4 5 666 5 4 111111111111 1 55 2 0 99999 2 1 444 1 44 3 1 2 2 22 5 6666666666 444444444 8888 5 7 00000000000 11111 3333 55 55 000 55 55 0 0 0 0 0 0 000000000 000 555555 0 4 11 11111111 4 6 11111111 4444 4 4 4 888
consensus : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( family-561 ) : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTA-A-AATTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112819 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112820 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGACACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112820 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112821 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---ATTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---GT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112822 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GT-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCCTGGGCAT
gi|112823 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112823 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112824 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAAA---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTATA-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112825 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TCTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TGGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112826 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112826 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAAC--AGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112827 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAGA---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTAT--AA---TTTG--G--TTTTATA-TGTA-A-AGTTAATT-GTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTAAATCA--------AA----TGGC-AA-GTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-G-TGCGCTGCAGG---AC-TAG-T------------TTT--TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GA-G---TG-CTG--CAGAACTT-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----AAACGT-TTGTTTGAAACGTT-----------AGT-----TCGAAACC--T--TTTTTTAA---TTTG--G--TTTTATA-TGTAGA-AGTTAATT-GTACGT-GATT-A---------AT---CT------TTT--TAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTA--CAGAACTA-GTTTTATTTA-----AAACA-CAGTTCTGGGCATAG----------TGTTTAGTG-T-TGTGCGAAACGT-TTGTTTGAAATATT-----------AGT-----TTGAAATC--T--TTAT--AT---TTTG--G--TTTTATA-TGTATA-AGTTAATT-GAACGT-GATT-A---------TT----T------TTT-TAAAA-CAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTAC-CTTGAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTT-AAAACA-GAGTTCTGGGCATAG----------TGTT----G-TGCG----A-ACGT-TTGTTTGAAACGTT----------------AGTTCGAAACC--T--TTAT--AA------A--A--TTTT---------A-AATTGATTT-TA----AATTGA---------TT---CT------TTT-T
gi|112831 : GTTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGAAG----T--TTCG--AG---TTTG--G--
gi|112831 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-TAT----TTGTTTagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112832 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GA-G---TG-CTG--CAtg
gi|112833 : GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AG----------TGTA--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--
gi|112833 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112834 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTAAG-ATTGTTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGGG-CAT----TTGTTT--GA-G-ATTG-TTG--CAGGACTA-GTTTT-----GTT-AAAACA-CAGTCCTGGGCAT--------------TT----GTT-TG----AGA
gi|112834 : GTTTGAG-ATTGTTGCAGG---AC-TAG-T------------TTTG-TT-------AAAACACAGTCCTGGG-CAT----TTGTTTGAGA-G---TG-TTG--CAGGACAA-GTTTgtgttgcaggacaagttt
gi|112835 : gtttaagattgttgcaggactagttttattaagttaaaacacagttctgggcatttGTTTG-TTATTGTTGCAGG---AC-TAG-T------------TTTA-CTTA--T--GAAACACAGTTCTAGG-CAT----TTGTTTA--A-G-ATTG-TTG--CAGGACTA-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112836 : GTTTGAG-ATTGTTGCAGG---AC-TAG-T------------TTTG-TT-------AAAACACAGTCCTGGG-CAT----TTGTTTGAGA-G---TG-TTG--CAGGACAA-GTTTTATTAAGTT-AAAACA-ttgtt
gi|112837 : GTTTGAG-ACTGTTGCGGT---AC-TAGGT------------TTTA-TTAA--CTTAAAATACAGTCCTGGG-CCT----TTGTTTG----TTATTG-TTG--CAGGACTA-GTTTTACTTA--T-GAAACA-CAGTTCTAGGCATcaatt
gi|112838 : GTTTG-A-GATTTTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAATCACAGTTCTGGG-CAT----ATGTTT--GA-G-ACTG-TTG--CGGTACTAGGTTTTATTAACTT-AAAATA-CAGTCCTGGGC
gi|112839 : GTTGA-G-AGCGCTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGAG-CAT----TTGTTTG-----------------------A-GTTTTATTAAGTT-AAAACA-CAGTTCTGGGCAT--------------TT----GTT-TG----AGA
gi|112840 : GTTCG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GA-G---TG-CTG--CAttttg
gi|112841 : GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTT-AAAAAAAGAGTCCTGAGCA-AG----------TGTA--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTCG--G--
gi|112841 : GTTCG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112842 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcga-AGTGCTCCAGG---TCGTAG-TCTGTTGGGAGCCTTTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATGG-CTG--CAGGACTA-GTTTTATTTATTT-AAAACA-GAGTCATGAGCA-AG----------TGT-------T-TG----AGACGC-AAGTCTGATACTTT-----------GGT
gi|112843 : -AGTGTTCCAGACATAC--AG-T------------TTTGGTTTAAGTTTGAAACA-AGTCTCAAG-CGTATG-CTGTCCA-GACACGTTGTCTGAACAG--CTG-GTCTCATT--ATT-AAAA---------------TAG----------TGTT----G----------AACAA-CAGT---------T-----------GGT-----TC--AACC--C--TACA--AGG--TTTG--AAACATTATACTGTATATAGTTAATTGGTA--T-GATC-A---------TTTGTCTGTATGATTT-CTAAA-TATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATT
gi|112844 : TG-CTG--CAA-ACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112844 : GTTTG-GT-G---TG-CTA--CAGGACTA-GTTTTATTTATTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGGCGT-AAGTCTGATACTTT-----------GGTgtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112845 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaTG--CAGGACTA-GTTTTATTTAC-----------AGTTCCGGGCATAGTGGTTTAGTGTGCT----G-T-TT----GGACATTAAA----ATATTTTTAGCCAAGAAAGGTTCGGGTCGAAACAAATAGTTTG--AAACCTTTGTTG--TTTTATC-C-TA-----TCA--TTATACGTTGATT-AAGCATGCTTTT---CT------TTTGTTAAAACAC--GAAT---TTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC--------AA----CGGCAAA-ATAGTCCAATGAAAA-TCC-TATATA-CATAC---
gi|112846 : AG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGGG-CAT----TTGTTTG--A-G-ATT--TTG--CAGGACTA-GTTTTATTAAGTT-AAATCA-CAGTTCTGGGCATA-----------TGTT----
gi|112847 : ------------TTTG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112848 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTACTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112849 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTCATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112850 : TTG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-CA-ACATTG-CTG--CAA-ACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAACA-AG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112851 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTT-AAAACA-GAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGAAG----T--TTCG--AG---TTTG--G--
gi|112852 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AG----------TGT-------A-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112853 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAA-GAGTCCTGAGCA-AG----------TGT-------A-TG----AGACGT-AAGTCTGATACTTT-----------GGT
gi|112854 : TG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTT-AAAACA-AAGTCCTGAGCA-AG----------TGT-------T-TG----AGACGT-AAGTCTGACACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--T
gi|112855 : ATCATTTAT-CT--AATCATTGGAACGAATCATCGGC-AAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTAT
blockSeqs : A T CAT G G CTGTTGGGAGCC G AG A A AGTGT A C CAT T AA G G T A AG T TGGTTTAGTG TTAGTGT TGCG T TAGCCAAGAAA GCAGC CAAA AG TT ACC TT AA C T T T T G AGCATGCTT TGT GTATGA G A TA TGTTTGAA G T TTGGAACG TCAT A A A GAA
blockSeqs : A . . . . . . . A A ATGC A . CAT . . A . G A AG T . TGTG . . . GCAGC CC . . G . . . G . T . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . A A T . . CAT . . A . T . G T . TGTG . . . GCAGC CC . . . . . . T . T . . . . . . . . . . T . . . . . .
blockSeqs : A . . . . . . . A A T . . CAT . . G . T . A T . TGTG . . . GCAGC CC . . . . . . T . T . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . A A T . . CAT . . A . G . G T . TGTG . . . GCAGC CC . . . . . . . . G . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . A A T . . TAT . . A . T . G T . TGTG . . . GCAGC CC . . . . . . . . T . . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . A A T . . CAT . . G . T . A T . TGTG . . . GCAGC TC . . . . . . . . . . . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . A A T . . CAT . . A . G . G T . TGTT . . . TCGGG CC . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A A T . . CGT . . G . T . G T . TGTT . . . GCAGC CC . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . A . T . A T . TGTT . . . GCAGC . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . A . T . G T . TGT . . . GCAGC . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . A . G . G T . TG . . . GCAGC . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . G . T . C T . T . . . GCAGC . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . A . G . G T . T . . . AGT . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . G . G . G T . T . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . G . G . C T . T . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . CAT . . G . C . C . . A . . . . . . . . . .
blockSeqs : . . . . . . . . A . A . . AT . . G . G . C . . A . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . AT . . G . T . C . . T . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . AC . . T . T . C . . T . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . AT . . A . A . G . . T . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . G . G . A . . T . . .
blockSeqs : . . . . . . . . A . . . . . . . G . T . A . . T . . .
blockSeqs : . . . . . . . . A . . . . . . . G . C . C . . T . . .
blockSeqs : . . . . . . . A . . . . . . . G . G . A . . T . . .
blockSeqs : . . . . . . . A . . . . . . . G . G . A . . T . . .
blockSeqs : . . . . . . . . . . . . A . G . A . . A .
blockSeqs : . . . . . . . . . . . A . G . A . . A .
blockSeqs : . . . . . . . . . . G . G . G . . T .
blockSeqs : . . . . . . . . . . A . G . G . .
blockSeqs : . . . . . . . . . A . T . G .
blockSeqs : . . . . . . . . . A . T . A .
blockSeqs : . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : CAT T******** GCAGC ****
originalCons : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT----G-T-TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAGCC--T--TTCG--AG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
finalCons : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTT-AAAACA-GAGTCCTGGGCATAG----------TGTT--------TG----AGACGT-AAGTCTGATACTTT-----------GGTGCAGCTCGGAG----T--TTCG--AG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATT-A---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Alignments
lowQualScore : 1 11111 222 1 11111111111111 111111111111 111 1 111111111 111111 11111111 11111111
lowQualScore : 6 1 222 1 1 777777777777 1 11 3 0 00000 2 1 000 1 11 2 1 3 55 5 66666666666666 1 0 1 555555555 0 77777777777 9 999999999999 22 0 555 22 22 4 888 5 4 777777777 777 222222 4 4 66 66666666 4 2 66666666 9999 4 4 4 777
lowQualScore : . . ... . . ............ . .. . . ..... . . ... . .. . . . .. . .............. . . . ......... . ........... . ............ .. . ... .. .. . ... . . ......... ... ...... . . .. ........ . . ........ .... . . . ...
lowQualScore : 4 5 666 5 4 111111111111 1 55 2 0 99999 2 1 444 1 44 3 1 2 44 5 33333333333333 3 1 5 999999999 7 00000000000 0 999999999999 66 3 222 66 66 4 777 4 4 888888888 888 888888 4 4 11 11111111 4 6 11111111 4444 4 4 4 888
consensus : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTTAAAACA-GAGTCCTGGGCATAGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATTA---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
Reference ( family-561 ) : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-GCATTG-CTG--CAGGACTA-GTTTTATTTANTTAAAACA-GAGTCCTGGGCATAGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATTA---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTNAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112818 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTGTGC----------GAA-ACGTTG-GTTTG---------AAACGTT-----------AGT-----TCGAA-------ACC--T--TTATAA---TTTG--G--TTTTATA-TGTA-A-AATTAATT-GTACGT-GATTA---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TGTATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112819 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTTAAAACA-GAGTCCTGGGCAT
gi|112820 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTTAAAACA-AAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ACACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112820 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112821 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgacactttggtgcagctcggagtttcgaGTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTGTGC----------GAA-ACGTTG-GTTTG---------AAACGTT-----------AGT-----TCGAA-------ACC--T--TTATAA---ATTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATTA---------TT---GT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112822 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GT-G---TG-CTG--CAGGACTA-GTTTTATTTATTTAAAACA-GAGTCCTGGGCAT
gi|112823 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTTAAAACA-AAGTACTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112823 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagagtcctgggcat
gi|112824 : gcttggaacattgctgcagaactagttttatttagttaaaacaaagtactgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAAA---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTGTGC----------GAA-ACGTTT-GTTTG---------AAACGTT-----------AGT-----TCGAA-------ACC--T--TTATAA---TTTG--G--TTTTATA-TGTATA-AGTTAATTTGTACGT-GATTA---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCAAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTAAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112825 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TCTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTGTGC----------GAA-ACGTTG-GTTTG---------AAACGTT-----------AGT-----TCGAA-------ACC--T--TTATAA---TTTG--G--TTTTATA-TGTA-A-AGTTAATTTGTACGT-GATTA---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACCATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGTCCAAGGAAAATTCT-TATATATCATAT---TTATTAGTAGGTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112826 : GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTCATTTAGTTAAAACA-AAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112826 : GTTTG-G-TGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAAC--AGTCCTGGG-CAT----gtgctgcaggactagttttatttatttaaaacagtcctgggcat
gi|112827 : gcttggaacattgctgcagaactagtttcatttagttaaaacaaagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTG-G-AATGCTGCAGA---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTTCTGGG-CATAGTGTTGTGCG-GA-G---TG-CTG--CAGGACTA-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTGTGC----------GAA-ACGTTT-GTTTG---------AAACGTT-----------AGT-----TCGAA-------ACC--T--TTATAA---TTTG--G--TTTTATA-TGTA-A-AGTTAATT-GTACGT-GATTA---------TT---CT------TTT-TTAAA-CAC--GAATCATTTGTTCAATCATTT--------GTAATCTAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTAAATCA--------AA----TGGC-AA-GTAGCCCAAGGGAAATTCA-TATATACCATAT---ATATTAGTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112828 : GTTTG-G-TGCGCTGCAGG---AC-TAG-T------------TTT--TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTGG-GA-G---TG-CTG--CAGAACTT-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTGTGC----------GAA-ACGTTT-GTTTG---------AAACGTT-----------AGT-----TCGAA-------ACCTTT--TTTTAA---TTTG--G--TTTTATA-TGTAGA-AGTTAATT-GTACGT-GATTA---------AT---CT------TTT--TAAA-CAC--GAATCATTTGTTCAATCATTT--------GTCATCCAATCATAAAGCAAAGTAGCTTGAGGAAAATTATTTCACTATTTAT-CTTTAATCA--------AA----CGGC-AA-GTAGCCCAATTAAAAGTTA-TATATATCATAT---ATATTATTAGTTGTGTGCATAATCCGCTCGGTGCACGTTACA
gi|112829 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-CAT----TTGTTTG-GA-G---TG-CTA--CAGAACTA-GTTTTATTTA----AAACA-CAGTTCTGGGCATAGTGTT---TAGTGTTGTGCGAA-ACGTTT-GTTTG---------AAATATT-----------AGT-----TTGAA-------A----TCTTTATAT---TTTG--G--TTTTATA-TGTATA-AGTTAATT-GAACGT-GATTA---------TT----T------TTT-TAAAA-CAT--GAATCATTTGTTCAATCATTT--------TTCATCCAATCATAAAGCAGAGTAACTTACGAAAAATTATTTGACTGTTTAC-CTTGAATCA--------AA----CGGC-AA-GTAGCCCAAGGAAAATTCT-TATATATAATAT---TTATTAGTATTTGTGTGCATAATCCGCTC-ATGCACGTAACA
gi|112830 : GTTTT-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCTTGGG-CAT----TTGTTTG-GA-G---TG-CTG--CAGAACTA-GTTTTATTTATTTAAAACA-GAGTTCTGGGCATAGTGTTG--T----------GCGAACGTTT-GTTTG---------AAACGTT-----------AGT
gi|112831 : GTTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTTAAAACA-GAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGAA-------G----T--TTCGAG---TTTG--G--tcgaaacctttataaaattttaaattgattttaaattgattcttttt
gi|112831 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTAAAACAGAGTCCTGGG-TAT----TTGTTTagtgctgcaggactagttttatttatttaaaacagagtcctgggtatttgttttg
gi|112832 : gtttggaacattgctgcaggactagttttatttagttaaaacagagtcctgagcaagtgtttgagacgtaagtctgatactttggtgcagctcgaagtttcgaGTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GA-G---TG-CTG--CAtg
gi|112833 : GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AGTGTA---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--
gi|112833 : GTTTG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112834 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcgaGTTTAAG-ATTGTTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGGG-CAT----TTGTTT--GA-G-ATTG-TTG--CAGGACTA-GTTTT-----GTTAAAACA-CAGTCCTGGGCAT-TTGTT---T----------GAG-A
gi|112834 : GTTTGAG-ATTGTTGCAGG---AC-TAG-T------------TTTG-TT-------AAAACACAGTCCTGGG-CAT----TTGTTTGAGA-G---TG-TTG--CAGGACAA-GTTTgtgttgcaggacaagttt
gi|112835 : gtttaagattgttgcaggactagttttattaagttaaaacacagttctgggcatttGTTTG-TTATTGTTGCAGG---AC-TAG-T------------TTTA-CTTA--T--GAAACACAGTTCTAGG-CAT----TTGTTTA--A-G-ATTG-TTG--CAGGACTA-GTTTTATTAAGTTAAAACA-CAGTTCTGGGCAT-TTGTT---T----------GAG-A
gi|112836 : GTTTGAG-ATTGTTGCAGG---AC-TAG-T------------TTTG-TT-------AAAACACAGTCCTGGG-CAT----TTGTTTGAGA-G---TG-TTG--CAGGACAA-GTTTTATTAAGTTAAAACA-ttgtt
gi|112837 : GTTTGAG-ACTGTTGCGGT---AC-TAGGT------------TTTA-TTAA--CTTAAAATACAGTCCTGGG-CCT----TTGTTTG----TTATTG-TTG--CAGGACTA-GTTTTACTTA--TGAAACA-CAGTTCTAGGCATcaatt
gi|112838 : GTTTG-A-GATTTTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAATCACAGTTCTGGG-CAT----ATGTTT--GA-G-ACTG-TTG--CGGTACTAGGTTTTATTAACTTAAAATA-CAGTCCTGGGC
gi|112839 : GTTGA-G-AGCGCTGCAGG---AC-TAG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGAG-CAT----TTGTTTG-----------------------A-GTTTTATTAAGTTAAAACA-CAGTTCTGGGCAT-TTGTT---T----------GAG-A
gi|112840 : GTTCG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----TTGTTTA-GA-G---TG-CTG--CAttttg
gi|112841 : GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AGTGTA---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTCG--G--
gi|112841 : GTTCG-G-AGTGCTGCAGG---AC-TAG-T------------TTTA-TTTA--TTTACAACAGAGTCCTGGG-CAT----agtgctgcaggactagttttatttatttacaacagagtcctgggcat
gi|112842 : gtttggaacattgctgcagaactagttttatttatttaaaaaaagagtcctgagcaagtgtatgagacgtaagtctgatactttggtgcagctcggagtttcga-AGTGCTCCAGG---TCGTAG-TCTGTTGGGAGCCTTTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATGG-CTG--CAGGACTA-GTTTTATTTATTTAAAACA-GAGTCATGAGCA-AGTGTT---T----------GAG-ACGCAA-GTCTG---------ATACTTT-----------GGT
gi|112843 : -AGTGTTCCAGACATAC--AG-T------------TTTGGTTTAAGTTTGAAACA-AGTCTCAAG-CGTATG-CTGTCCA-GACACGTTGTCTGAACAG--CTG-GTCTCATT--ATTAAAA---------------TAGTGTT--------------GA--ACAACA-GT------------------T-----------GGTTCAACCC------------------TACAAGG--TTTG--AAACATTATACTGTATATAGTTAATTGGTA--T-GATCA---------TTTGTCTGTATGATTT-CTAAA-TATTAGAATCATTTTATTATTCCTTTTGTTTGAAGTTAACTAATCATAAGGCAA-GAAGCCTGAGGAAAATT
gi|112844 : TG-CTG--CAA-ACTA-GTTTTATTTAGTTAAAACA-AAGTCCTGAACA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112844 : GTTTG-GT-G---TG-CTA--CAGGACTA-GTTTTATTTATTTAAAACA-AAGTCCTGAGCA-AGTGTT---T----------GAG-GCGTAA-GTCTG---------ATACTTT-----------GGTgtgctacaggactagttttatttatttaaaacaaagtcctgagcaagtgtttgaggcgtaagtctgatactttggt
gi|112845 : tgctgcaaactagttttatttagttaaaacaaagtcctgaacaagtgtttgagacgtaagtctgatactttggtgcagctcggagtttcgaTG--CAGGACTA-GTTTTATTTAC----------AGTTCCGGGCATAGTGGT---T----------TAG--TGTGCTGTTTGGACATTAAAATATTTTTAGCCAAGAAAGGTTCGGGTCGAAACAAATAG----T--TT-GAAACCTTTGTTG--TTTTATC-C-TA-----TCA--TTATACGTTGATTAAGCATGCTTTT---CT------TTTGTTAAAACAC--GAAT---TTATCTAATCGTTT--------GTCATTCAATCATAATGCAAAATAACTT-AACAAAAGGAGTTCATCATTTATGTTTGAATCC--------AA----CGGCAAA-ATAGTCCAATGAAAA-TCC-TATATA-CATAC---
gi|112846 : AG-T------------TTTA-TTAA--GTTAAAACACAGTTCTGGG-CAT----TTGTTTG--A-G-ATT--TTG--CAGGACTA-GTTTTATTAAGTTAAATCA-CAGTTCTGGGCATA-TGTT---
gi|112847 : ------------TTTG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTTAAAACA-AAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGT
gi|112848 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTTAAAACA-AAGTACTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112849 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTCATTTAGTTAAAACA-AAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112850 : TTG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-CA-ACATTG-CTG--CAA-ACTA-GTTTTATTTAGTTAAAACA-AAGTCCTGAACA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112851 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGGACTA-GTTTTATTTAGTTAAAACA-GAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGTGCAGCTCGAA-------G----T--TTCGAG---TTTG--G--
gi|112852 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AGTGTA---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGT
gi|112853 : TTG-TTTG--TCTCAGACAG-GTGTTGGGACAG------GTTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTATTTAAAAAAAGAGTCCTGAGCA-AGTGTA---T----------GAG-ACGTAA-GTCTG---------ATACTTT-----------GGT
gi|112854 : TG-TTTG--CCTCAGACAG-GTGTTGGGACAG------GCTTG-GA-ACATTG-CTG--CAGAACTA-GTTTTATTTAGTTAAAACA-AAGTCCTGAGCA-AGTGTT---T----------GAG-ACGTAA-GTCTG---------ACACTTT-----------GGTGCAGCTCGGA-------G----T--TTCGAG---TTTG--G--T
gi|112855 : ATCATTTAT-CT--AATCATTGGAACGAATCATCGGC-AAAGTAGCCCAAGGAAAATTATATATATAT-ATATGAATTATTACTAGCTGTAT