lowQualScore : 1 22 1
lowQualScore : 1 33 1 1 1 66 11 4 2222 5 222222 444444 1 222 333 11 3 0
lowQualScore : . .. . . . .. .. . .... . ...... ...... . ... ... .. . .
lowQualScore : 3 11 3 1 1 33 55 5 2222 0 999999 444444 0 888 222 44 5 6
consensus : AAGCCTCGTT-T--CTGAGGGAGGTT-T-ATCGGGC--ATT----TGAATCACTGATT------A------A-CA--CA---GAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
Reference ( gi|13306 ) : AAGCCTCATT-T--CAGAGGGAGGTT-T-ATCGGGC--AGT----TGAATCGCTGATT------A------A-CA--TA---GAAGTTCAGTGAGA--TCTTTTACGTGCACTGG
gi|13290 : AAGCCTTGTT-T--CAGAGAGAAGTT-T-CT-GAGT--ATT----AGAATCGCTGATT------A------A-CA--TA---GAAGTTCAGTGAGA--TCTTTTACATGCACTGG
gi|13286 : aattattattggAAACCTCATT-T--TAGAGGGAGGTT-T-A-CAGGC--ATT----TGAATCACTGATT------A------A-CA--TA---GAAGTT--G-GAGA--TCTTTTACATGCATTGG
gi|13285 : caatcatgaaatgattattacaggAAGTCTCGTT-T--CCGAGGGAGGTT-T-A-CGGGC--ATC----TGAATCACTGATT------A------A-AA--TA---GAAGTTCAGTGA-A--TGCTTTACGTGCACTGG
gi|13301 : tcaatgaactgataattatcggAAGCCTTAAT-T--CTGAGGGAGATT-T--TCAGGC--ATT----TGAACTGCTGATT------A------C-CA--TA---GAAGTTCAGTGAGA--TATTTTACATACACTGG
gi|13307 : gAAGCCTCCCT-T--CTGAGGGAGGTT-T-A-CGGGC--ATT----TGCATCACTGATT------T------A-CA--TT---GAAGTTCAGTGAGATCTCTTTTACATGCGCTGG
gi|13296 : AAGACTCATT-T--CAGAGGGAGGTA-T-A-CGAGC--AAT----TGCATCACCGATT------A------A-TA--CA---GATGTTCAGTGAGA--TCTTTTACAAGCAATG
gi|13303 : ttattacaggAAACCT-GTT-T--CTGAGGAAGGTT-T-A-CAGGC--ATT----TGAATTGTTGACT------A------T-CA--AA---GAAGTTCAGTGAGA--TCTTTTATATGCACTGG
gi|13300 : gAAGCTTCGTT-T--CTAAGGAAGGCT-T-A-CGGGC--ATT----TGCATCACTGATT------A------A-CA--GA---GAAGTTCAGTAAGA--TATTTTACGTGAAATGG
gi|13295 : gAAGCCTCATT-T--CAGAGGGAGGTT-T-AT-GGGC--ATT----TGCATCAC-------------------------A---GAAGTTCAGTCAGA--TCTTTTACATGCACT
gi|13297 : ttattacaggAAGCCTCATT-T--CTGAGGAAAGTT-T--TCAGAC--ATT----TGAATCACTAATT------A------A-CA--TA---GAAGTTCTGCGACA--CATTTTACCTACACTGG
gi|13308 : ttacaggAAGCCTCGTT-T--CAAAGGGAGGTT-T-AT-AGCC--ATT----TACATCACTGATT------A------A-CA--CA---GAAGTTCAGTGAGA--TC-TTCACATG
gi|13302 : AAACGTAATT-T--CTGAGGGAAGTT-T-A-CGGTC--ATT----TGCATCACTGATT------A------A-CAATTACCGGTAATTCAGTGAGA--TCTTTCACGTGCACTGG
gi|13293 : gAAGCCTCTTT-T--CCGAGGGAGGTT-T-AT-GGGC--ATT----TGAATCACTGATT--------------------------AGTTCTACGAGA--TATTTTACATGCACTGG
gi|13299 : attactttaggAAGCCTTGTT-T--CTGATGGAGTTT-T-A-CAGTC--ATT----TGAATCACTGATT------A--------CA--CA---GAAGTTCAGTGAGA--TCTTTTGCAAACACAGG
gi|13305 : gAAGCCTCATT-T--TCAAGGGAGGTT-T-A-CGGGC--ATT----TGCATCACTGGT--------------------------AAGTCCAGCGAGA--TATTTTACGCGCACTGG
gi|13294 : gAAGCCTCGTT-TTTCGG-GGAAAGTT-T---CAG-C--ATT----TAAATCACTGATT------A------A-CA--TA---GAAGTTCAGCAAGA--TCTTTTGCATGCATT
gi|13279 : ttattatagaAAGCCTCATT-T--CTGAACAAGGTC-A-AT-GTTC--ATT----TGATTCACTGATT------A------A-AA--CT---GAAGTTCAGTGAGA--TATTTAGCATGCACTGG
gi|13281 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactttttcttgcagAAGCCTCATT-T--CTGAGAAAGGTC-A-AT-GTTC--ATT----TGATTCACAGATT------A------A-AA--CT---GAAGTTCAGTGAGA--TATTTAGCATGCACTGG
gi|13304 : gtcaattattattgagtaaactaatctccctttttagattatttccgtgtacaggtttcaattgaaatgatcgcaaaactatttcttgctgAGGTCTCGGT-T--ATGAGAGAGGTT-A-A-CGGGC--TTT----TGCGTCACTAATT------A------A-CA--TA---GAAGTTCAATGAGA--TATGTTATATGCACTAG
gi|13288 : gAAGTCTCATTAT--TA-AGCGAGGTT-T-AT-GGGC--ATT----TGAGTCATTTATT------A------A-GG--TA---GTTGTTCTGTGAAA--TATTTTACATGCACTG
gi|13283 : attaaagaactgattactacaggAAGCCTCATT-T--CTGAACAAGGTC-A-AT-GTTC--ATT----TGATTCACTGATT------A------A-AA--CT---GAAGTTCAGCGAGA--TATTTAGCATGCACTGG
gi|13292 : attattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactatttcttgcagAAGCCCCATT-C--CTGAGAGAG----T-AT---------T----TTAATGTCTGATTTTATTAATT----A-CA--TA---GAAGTTCAGTGAGA--TATTTTACATGCACTGG
gi|13282 : tacttctagccactgAACCCTTATT-T--CTGAGCGAGGTC-A-AT-GTTC--ATT----TTATTCACTGATT------A------A-AA--CA---GAAGTACAGTGAGA--TATTTAGCATGTACTGG
gi|13280 : aattattactaagtaaactaatctccctgtttagattgtttccgggtacaggtttcaattgaaatgattgtaaaacaatttcttccagAAGCCTCATT-T--CTGAACAAGGTC-A-AT-GTTC--ATT----TGATTCACTGATT------A------A-AA--CT---GAAGTTCATCGAGA--TATTT
gi|13284 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtataactatttcttgcagAGCCTCGTT-T--ACGATTGAGGTT-T-TACGGAC--ATT----TAAATCACTGAAT------A------G-CA--TA---GACGTTCAGTGAGA--TATTTTACGTGCACTGGagcat
gi|13309 : taacacccttcttttccttatactgcacagggtccaatatggagcaatgtcatacAGCCTCGTT-TA-C-----GAGATT-T-TACGTGC--ATT----TAAATCACTGATT------A------A-CA--TA---GAAGTTCAGTGAGA--TATTTTATGTGCACTG
gi|13289 : AGCCTCGTT-T--CTGAGGAAGGTT---A-CGGGC--ATTAATTTGAATCACTGATT------ACCTATAA-CA--AA---GATGTTTAGTGTGA--TCTTTTACCTGCA
gi|13291 : attgtgaattgattattacaggcGCCTCATT-T--CTAAGGGAGGTT-T-AT-GGGC--ATT----TGCATCACTGATT------A------A-CT--TG-----AGTTCAGTGAGA--TCTACAATGTGCACTGG
gi|13298 : tatgttattataggatGCCTCATT-T--CTGAGGGGGGTT-T-A-AGGGC--ATT----TGCATCACTGAT--------------G-CA--TA---GGAGTTCAGCGAGA--TATTTTATGTGCAATGG
gi|13287 : ttatagaatCCCGTT-T--CAGAGGGAGGTT-G-A-CGGGC--ATT----TTAATCACTGAAT------A------A-CA--TA---AAAGTTCAGTGCGA--TATTTTCCATACATTG
gi|13310 : caatgaaatgattattattgaaattTT-T--TTGAGGGAGGCTCT-AT-GGGCGTAAT----TTGGTCACTGTTT------A------AACA--CA---GAAGTTCAGTGAGA--TCGTTTACGTGCACTGG
gi|13314 : AGGTT-T-A-CGGGC--ATT----TGAATCACTGATT------A------A-CA--CA---GAAGTTCAATGAGA--TATTTTACATGCACT
gi|13313 : acacAGGTT-TTAT-GGGC--ATT----TGAATCACTGATA------A------A-CA--CACA-GAAGTTCAGTGAGA--TCTTCTACGTGCAATGG
gi|13312 : tgcacAGGAT-T-A-CTGGC--ACT----TGCATCACTGATT------A------A-CA---A---ATAGTTCAGTGAGA--TATTTCATGTTCACTGG
gi|13311 : tgcacGTT-T-A-CACGC--ATT----TGAATCACTCATT------C------A-CA--TT---GAAGTTCAGTGAGA--TCATTTACATGCATTGG
gi|13316 : tgcacaacgttcacatC--ATT----TGAATCACTGATT------A------A-CA--CA---GACGTTCAGTGAGA--TCTTGTACGTGCGCTG
gi|13317 : C--ATT----TAAATCACTGATT------A------A-TA--TA---GAAGTTCAGCGAGA--TCCTTATTGTACACTGG
gi|13318 : T----TGAATCACTGATT------A------A-CA--CA---GACGTTCAGTGAGA--TC-TTTATGTGCACTGG
gi|13315 : at----TGAATCACTTAAT------A------A-CA--CA---GAAGATCAGTGAGA--TATTTTACATGCACTGG
Alignments
lowQualScore : 22
lowQualScore : 0 1 11 1 1 55 111 2222 1 222222 1 66666666 11 1 0
lowQualScore : . . .. . . .. ... .... . ...... . ........ .. . .
lowQualScore : 2 2 55 1 1 44 888 1111 0 999999 0 11111111 44 0 3
consensus : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
Reference ( family-545 ) : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
gi|13279 : AAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCAGTGAGA--TATTTAGCATGCACTGG
gi|13280 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactttttcttgcagAAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCATCGAGA--TATTT
gi|13281 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtataactatttcttgcagAAGCCTCATTTCT-GAGAAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACAGATTA------A-AA-----C--TGAAGTTCAGTGAGA--TATTTAGCATGCACTGGagcat
gi|13282 : gtcaattattattgagtaaactaatctccctttttagattatttccgtgtacaggtttcaattgaaatgatcgcaaaactatttcttgctgAACCCTTATTTCT-GAGCGAGG--TC-A-AT-GTTC---ATT----TTATTC-ACTGATTA------A-AA-----C--AGAAGTACAGTGAGA--TATTTAGCATGTACTGG
gi|13283 : aattattactaagtaaactaatctccctgtttagattgtttccgggtacaggtttcaattgaaatgattgtaaaacaatttcttccagAAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCAGCGAGA--TATTTAGCATGCACTGG
gi|13284 : attattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactatttcttgcagAGCCTCGTTTAC-GATTGAGG--TT-T-TACGGAC---ATT----TAAATC-ACTGAATA------G-CA-----T--AGACGTTCAGTGAGA--TATTTTACGTGCACTGG
gi|13285 : taacacccttcttttccttatactgcacagggtccaatatggagcaatgtcatacAAGTCTCGTTTCC-GAGGGAGG--TT-T-A-CGGGC---ATC----TGAATC-ACTGATTA------A-AA-----T--AGAAGTTCAGTGA-A--TGCTTTACGTGCACTGG
gi|13286 : tcaatgaactgataattatcggAAACCTCATTTTA-GAGGGAGG--TT-T-A-CAGGC---ATT----TGAATC-ACTGATTA------A-CA-----T--AGAAGTT--G-GAGA--TCTTTTACATGCATTGG
gi|13287 : caatcatgaaatgattattacaggCCCGTTTCA-GAGGGAGG--TT-G-A-CGGGC---ATT----TTAATC-ACTGAATA------A-CA-----T--AAAAGTTCAGTGCGA--TATTTTCCATACATTG
gi|13288 : caatgaaatgattattattgaaattAAGTCTCATTATT-AAGCGAGG--TT-T-AT-GGGC---ATT----TGAGTC-ATTTATTA------A-GG-----T--AGTTGTTCTGTGAAA--TATTTTACATGCACTG
gi|13289 : attaaagaactgattactacaggAGCCTCGTTTCT-GAGGAAGG--TT---A-CGGGC---ATTAATTTGAATC-ACTGATTACCTATAA-CA-----A--AGATGTTTAGTGTGA--TCTTTTACCTGCA
gi|13290 : attgtgaattgattattacaggcAAGCCTTGTTTCA-GAGAGAAG--TT-T-CT-GAGT---ATT----AGAATC-GCTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TCTTTTACATGCACTGG
gi|13291 : aattattattggGCCTCATTTCT-AAGGGAGG--TT-T-AT-GGGC---ATT----TGCATC-ACTGATTA------A-CT-----T----GAGTTCAGTGAGA--TCTACAATGTGCACTGG
gi|13292 : tatgttattataggatAAGCCCCATTCCT-GAGAGAGTATTT-T-AATG-------TC----TGATTTTATTAATTA--------CA-----T--AGAAGTTCAGTGAGA--TATTTTACATGCACTGG
gi|13293 : tacttctagccactgAAGCCTCTTTTCC-GAGGGAGG--TT-T-AT-GGGC---ATT----TGAATC-ACTGATT----------------------AGTTCTACGAGA--TATTTTACATGCACTGG
gi|13294 : attactttaggAAGCCTCGTTTTTCGGGGAAAG--TT-T---CAG-C---ATT----TAAATC-ACTGATTA------A-CA-----T--AGAAGTTCAGCAAGA--TCTTTTGCATGCATT
gi|13295 : ttattatagaAAGCCTCATTTCA-GAGGGAGG--TT-T-AT-GGGC---ATT----TGCATC-AC------------------------AGAAGTTCAGTCAGA--TCTTTTACATGCACT
gi|13296 : ttattacaggAAGACTCATTTCA-GAGGGAGG--TA-T-A-CGAGC---AAT----TGCATC-ACCGATTA------A-TA-----C--AGATGTTCAGTGAGA--TCTTTTACAAGCAATG
gi|13297 : ttattacaggAAGCCTCATTTCT-GAGGAAAG--TT-T--TCAGAC---ATT----TGAATC-ACTAATTA------A-CA-----T--AGAAGTTCTGCGACA--CATTTTACCTACACTGG
gi|13298 : ttacaggGCCTCATTTCT-GAGGGGGG--TT-T-A-AGGGC---ATT----TGCATC-ACTGAT--------G-CA-----T--AGGAGTTCAGCGAGA--TATTTTATGTGCAATGG
gi|13299 : ttatagaatAAGCCTTGTTTCT-GATGGAGT--TT-T-A-CAGTC---ATT----TGAATC-ACTGATTA--------CA-----C--AGAAGTTCAGTGAGA--TCTTTTGCAAACACAGG
gi|13300 : gAAGCTTCGTTTCT-AAGGAAGG--CT-T-A-CGGGC---ATT----TGCATC-ACTGATTA------A-CA-----G--AGAAGTTCAGTAAGA--TATTTTACGTGAAATGG
gi|13301 : gAAGCCTTAATTCT-GAGGGAGA--TT-T--TCAGGC---ATT----TGAACT-GCTGATTA------C-CA-----T--AGAAGTTCAGTGAGA--TATTTTACATACACTGG
gi|13302 : gTTTCT-GAGGGAAG--TT-T-A-CGGTC---ATT----TGCATC-ACTGATTA------A-CAATTACC--GGTAATTCAGTGAGA--TCTTTCACGTGCACTGG
gi|13303 : gaaacgtaaAAACCT-GTTTCT-GAGGAAGG--TT-T-A-CAGGC---ATT----TGAATT-GTTGACTA------T-CA-----A--AGAAGTTCAGTGAGA--TCTTTTATATGCACTGG
gi|13304 : gAGGTCTCGGTTAT-GAGAGAGG--TT-A-A-CGGGC---TTT----TGCGTC-ACTAATTA------A-CA-----T--AGAAGTTCAATGAGA--TATGTTATATGCACTAG
gi|13305 : gAAGCCTCATTTTC-AAGGGAGG--TT-T-A-CGGGC---ATT----TGCATC-ACTGGT----------------------AAGTCCAGCGAGA--TATTTTACGCGCACTGG
gi|13306 : gAAGCCTCATTTCA-GAGGGAGG--TT-T-ATCGGGC---AGT----TGAATC-GCTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TCTTTTACGTGCACTGG
gi|13307 : AAGCCTCCCTTCT-GAGGGAGG--TT-T-A-CGGGC---ATT----TGCATC-ACTGATTT------A-CA-----T--TGAAGTTCAGTGAGATCTCTTTTACATGCGCTGG
gi|13308 : AAGCCTCGTTTCA-AAGGGAGG--TT-T-AT-AGCC---ATT----TACATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TC-TTCACATG
gi|13309 : AGCCTCGTTTAC-GAGAT-----TT-T-A-CGTGC---ATT----TAAATC-ACTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TATTTTATGTGCACTG
gi|13310 : TTTTT-GAGGGAGG--CTCT-AT-GGGCGTAATT----TGG-TC-ACTGTTTA------AACA-----C--AGAAGTTCAGTGAGA--TCGTTTACGTGCACTGG
gi|13311 : G--TT-T-A-CACGC---ATT----TGAATC-ACTCATTC------A-CA-----T--TGAAGTTCAGTGAGA--TCATTTACATGCATTGG
gi|13312 : tgcacaacgttcacatAGG--AT-T-A-CTGGC---ACT----TGCATC-ACTGATTA------A-CA--------AATAGTTCAGTGAGA--TATTTCATGTTCACTGG
gi|13313 : tgcacAGG--TT-TTAT-GGGC---ATT----TGAATC-ACTGATAA------A-CA-----CACAGAAGTTCAGTGAGA--TCTTCTACGTGCAATGG
gi|13314 : tgcacAGG--TT-T-A-CGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAATGAGA--TATTTTACATGCACT
gi|13315 : acacC---ATG----TGAATC-ACTTAATA------A-CA-----C--AGAAGATCAGTGAGA--TATTTTACATGCACTGG
gi|13316 : tC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGACGTTCAGTGAGA--TCTTGTACGTGCGCTG
gi|13317 : C---ATT----TAAATC-ACTGATTA------A-TA-----T--AGAAGTTCAGCGAGA--TCCTTATTGTACACTGG
gi|13318 : ---ATT----TGAATC-ACTGATTA------A-CA-----C--AGACGTTCAGTGAGA--TC-TTTATGTGCACTGG
Alignments
lowQualScore : 22
lowQualScore : 0 1 11 1 1 55 111 2222 1 222222 1 66666666 11 1 0
lowQualScore : . . .. . . .. ... .... . ...... . ........ .. . .
lowQualScore : 2 2 55 1 1 44 888 1111 0 999999 0 11111111 44 0 3
consensus : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
Reference ( family-545 ) : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
gi|13279 : AAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCAGTGAGA--TATTTAGCATGCACTGG
gi|13280 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactttttcttgcagAAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCATCGAGA--TATTT
gi|13281 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtataactatttcttgcagAAGCCTCATTTCT-GAGAAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACAGATTA------A-AA-----C--TGAAGTTCAGTGAGA--TATTTAGCATGCACTGGagcat
gi|13282 : gtcaattattattgagtaaactaatctccctttttagattatttccgtgtacaggtttcaattgaaatgatcgcaaaactatttcttgctgAACCCTTATTTCT-GAGCGAGG--TC-A-AT-GTTC---ATT----TTATTC-ACTGATTA------A-AA-----C--AGAAGTACAGTGAGA--TATTTAGCATGTACTGG
gi|13283 : aattattactaagtaaactaatctccctgtttagattgtttccgggtacaggtttcaattgaaatgattgtaaaacaatttcttccagAAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCAGCGAGA--TATTTAGCATGCACTGG
gi|13284 : attattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactatttcttgcagAGCCTCGTTTAC-GATTGAGG--TT-T-TACGGAC---ATT----TAAATC-ACTGAATA------G-CA-----T--AGACGTTCAGTGAGA--TATTTTACGTGCACTGG
gi|13285 : taacacccttcttttccttatactgcacagggtccaatatggagcaatgtcatacAAGTCTCGTTTCC-GAGGGAGG--TT-T-A-CGGGC---ATC----TGAATC-ACTGATTA------A-AA-----T--AGAAGTTCAGTGA-A--TGCTTTACGTGCACTGG
gi|13286 : tcaatgaactgataattatcggAAACCTCATTTTA-GAGGGAGG--TT-T-A-CAGGC---ATT----TGAATC-ACTGATTA------A-CA-----T--AGAAGTT--G-GAGA--TCTTTTACATGCATTGG
gi|13287 : caatcatgaaatgattattacaggCCCGTTTCA-GAGGGAGG--TT-G-A-CGGGC---ATT----TTAATC-ACTGAATA------A-CA-----T--AAAAGTTCAGTGCGA--TATTTTCCATACATTG
gi|13288 : caatgaaatgattattattgaaattAAGTCTCATTATT-AAGCGAGG--TT-T-AT-GGGC---ATT----TGAGTC-ATTTATTA------A-GG-----T--AGTTGTTCTGTGAAA--TATTTTACATGCACTG
gi|13289 : attaaagaactgattactacaggAGCCTCGTTTCT-GAGGAAGG--TT---A-CGGGC---ATTAATTTGAATC-ACTGATTACCTATAA-CA-----A--AGATGTTTAGTGTGA--TCTTTTACCTGCA
gi|13290 : attgtgaattgattattacaggcAAGCCTTGTTTCA-GAGAGAAG--TT-T-CT-GAGT---ATT----AGAATC-GCTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TCTTTTACATGCACTGG
gi|13291 : aattattattggGCCTCATTTCT-AAGGGAGG--TT-T-AT-GGGC---ATT----TGCATC-ACTGATTA------A-CT-----T----GAGTTCAGTGAGA--TCTACAATGTGCACTGG
gi|13292 : tatgttattataggatAAGCCCCATTCCT-GAGAGAGTATTT-T-AATG-------TC----TGATTTTATTAATTA--------CA-----T--AGAAGTTCAGTGAGA--TATTTTACATGCACTGG
gi|13293 : tacttctagccactgAAGCCTCTTTTCC-GAGGGAGG--TT-T-AT-GGGC---ATT----TGAATC-ACTGATT----------------------AGTTCTACGAGA--TATTTTACATGCACTGG
gi|13294 : attactttaggAAGCCTCGTTTTTCGGGGAAAG--TT-T---CAG-C---ATT----TAAATC-ACTGATTA------A-CA-----T--AGAAGTTCAGCAAGA--TCTTTTGCATGCATT
gi|13295 : ttattatagaAAGCCTCATTTCA-GAGGGAGG--TT-T-AT-GGGC---ATT----TGCATC-AC------------------------AGAAGTTCAGTCAGA--TCTTTTACATGCACT
gi|13296 : ttattacaggAAGACTCATTTCA-GAGGGAGG--TA-T-A-CGAGC---AAT----TGCATC-ACCGATTA------A-TA-----C--AGATGTTCAGTGAGA--TCTTTTACAAGCAATG
gi|13297 : ttattacaggAAGCCTCATTTCT-GAGGAAAG--TT-T--TCAGAC---ATT----TGAATC-ACTAATTA------A-CA-----T--AGAAGTTCTGCGACA--CATTTTACCTACACTGG
gi|13298 : ttacaggGCCTCATTTCT-GAGGGGGG--TT-T-A-AGGGC---ATT----TGCATC-ACTGAT--------G-CA-----T--AGGAGTTCAGCGAGA--TATTTTATGTGCAATGG
gi|13299 : ttatagaatAAGCCTTGTTTCT-GATGGAGT--TT-T-A-CAGTC---ATT----TGAATC-ACTGATTA--------CA-----C--AGAAGTTCAGTGAGA--TCTTTTGCAAACACAGG
gi|13300 : gAAGCTTCGTTTCT-AAGGAAGG--CT-T-A-CGGGC---ATT----TGCATC-ACTGATTA------A-CA-----G--AGAAGTTCAGTAAGA--TATTTTACGTGAAATGG
gi|13301 : gAAGCCTTAATTCT-GAGGGAGA--TT-T--TCAGGC---ATT----TGAACT-GCTGATTA------C-CA-----T--AGAAGTTCAGTGAGA--TATTTTACATACACTGG
gi|13302 : gTTTCT-GAGGGAAG--TT-T-A-CGGTC---ATT----TGCATC-ACTGATTA------A-CAATTACC--GGTAATTCAGTGAGA--TCTTTCACGTGCACTGG
gi|13303 : gaaacgtaaAAACCT-GTTTCT-GAGGAAGG--TT-T-A-CAGGC---ATT----TGAATT-GTTGACTA------T-CA-----A--AGAAGTTCAGTGAGA--TCTTTTATATGCACTGG
gi|13304 : gAGGTCTCGGTTAT-GAGAGAGG--TT-A-A-CGGGC---TTT----TGCGTC-ACTAATTA------A-CA-----T--AGAAGTTCAATGAGA--TATGTTATATGCACTAG
gi|13305 : gAAGCCTCATTTTC-AAGGGAGG--TT-T-A-CGGGC---ATT----TGCATC-ACTGGT----------------------AAGTCCAGCGAGA--TATTTTACGCGCACTGG
gi|13306 : gAAGCCTCATTTCA-GAGGGAGG--TT-T-ATCGGGC---AGT----TGAATC-GCTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TCTTTTACGTGCACTGG
gi|13307 : AAGCCTCCCTTCT-GAGGGAGG--TT-T-A-CGGGC---ATT----TGCATC-ACTGATTT------A-CA-----T--TGAAGTTCAGTGAGATCTCTTTTACATGCGCTGG
gi|13308 : AAGCCTCGTTTCA-AAGGGAGG--TT-T-AT-AGCC---ATT----TACATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TC-TTCACATG
gi|13309 : AGCCTCGTTTAC-GAGAT-----TT-T-A-CGTGC---ATT----TAAATC-ACTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TATTTTATGTGCACTG
gi|13310 : TTTTT-GAGGGAGG--CTCT-AT-GGGCGTAATT----TGG-TC-ACTGTTTA------AACA-----C--AGAAGTTCAGTGAGA--TCGTTTACGTGCACTGG
gi|13311 : G--TT-T-A-CACGC---ATT----TGAATC-ACTCATTC------A-CA-----T--TGAAGTTCAGTGAGA--TCATTTACATGCATTGG
gi|13312 : tgcacaacgttcacatAGG--AT-T-A-CTGGC---ACT----TGCATC-ACTGATTA------A-CA--------AATAGTTCAGTGAGA--TATTTCATGTTCACTGG
gi|13313 : tgcacAGG--TT-TTAT-GGGC---ATT----TGAATC-ACTGATAA------A-CA-----CACAGAAGTTCAGTGAGA--TCTTCTACGTGCAATGG
gi|13314 : tgcacAGG--TT-T-A-CGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAATGAGA--TATTTTACATGCACT
gi|13315 : acacC---ATG----TGAATC-ACTTAATA------A-CA-----C--AGAAGATCAGTGAGA--TATTTTACATGCACTGG
gi|13316 : tC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGACGTTCAGTGAGA--TCTTGTACGTGCGCTG
gi|13317 : C---ATT----TAAATC-ACTGATTA------A-TA-----T--AGAAGTTCAGCGAGA--TCCTTATTGTACACTGG
gi|13318 : ---ATT----TGAATC-ACTGATTA------A-CA-----C--AGACGTTCAGTGAGA--TC-TTTATGTGCACTGG
blockSeqs : C AT C T AC GTA AATT T CCTATA A ATTACC TC A
blockSeqs : . . . . AT . . . . . CAC . A
blockSeqs : . . . . TC . . . . . C . A
blockSeqs : . . . . TC . . . . . C . A
blockSeqs : . . . . TC . . . . . C . A
blockSeqs : . . . . T . . . . . C . G
blockSeqs : . . . . T . . . . . T . C
blockSeqs : . . . . T . . . . . T . A
blockSeqs : . . . . T . . . . . T . A
blockSeqs : . . . . C . . . . . T . C
blockSeqs : . . . . C . . . . . T . C
blockSeqs : . . . . C . . . . . A . C
blockSeqs : . . . . T . . . . . T . A
blockSeqs : . . . . C . . . . . T . A
blockSeqs : . . . . T . . . . . T . C
blockSeqs : . . . . T . . . . . T . C
blockSeqs : . . . . T . . . . . C . C
blockSeqs : . . . . C . . . . . T . A
blockSeqs : . . . . T . . . . . T . A
blockSeqs : . . . . C . . . . . C . C
blockSeqs : . . . . A . . . . . G . A
blockSeqs : . . . . C . . . . . T . A
blockSeqs : . . . . C . . . . . A . C
blockSeqs : . . . . C . . . . . T . C
blockSeqs : . . . . C . . . . . T . A
blockSeqs : . . . . C . . . . . T . A
blockSeqs : . . . . C . . . . . C . C
blockSeqs : . . . . C . . . . . T . C
blockSeqs : . . . . T . . . . . C . C
blockSeqs : . . . . C . . . . . T . A
blockSeqs : . . . . T . . . . . C . C
blockSeqs : . . . C . . . . . C . C
blockSeqs : . . . C . . . . . C . A
blockSeqs : . . . T . . . . . T . C
blockSeqs : . . . C . . . . . C . A
blockSeqs : . . . . . . . A
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . C
blockSeqCons :
originalCons : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
finalCons : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
Alignments
lowQualScore : 22
lowQualScore : 0 1 11 1 1 55 111 2222 1 222222 1 66666666 11 1 0
lowQualScore : . . .. . . .. ... .... . ...... . ........ .. . .
lowQualScore : 2 2 55 1 1 44 888 1111 0 999999 0 11111111 44 0 3
consensus : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
Reference ( family-545 ) : AAGCCTCGTTTCT-GAGGGAGG--TT-T-ATCGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TNTTTTACGTGCACTGG
gi|13279 : AAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCAGTGAGA--TATTTAGCATGCACTGG
gi|13280 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactttttcttgcagAAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCATCGAGA--TATTT
gi|13281 : gtcaattattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtataactatttcttgcagAAGCCTCATTTCT-GAGAAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACAGATTA------A-AA-----C--TGAAGTTCAGTGAGA--TATTTAGCATGCACTGGagcat
gi|13282 : gtcaattattattgagtaaactaatctccctttttagattatttccgtgtacaggtttcaattgaaatgatcgcaaaactatttcttgctgAACCCTTATTTCT-GAGCGAGG--TC-A-AT-GTTC---ATT----TTATTC-ACTGATTA------A-AA-----C--AGAAGTACAGTGAGA--TATTTAGCATGTACTGG
gi|13283 : aattattactaagtaaactaatctccctgtttagattgtttccgggtacaggtttcaattgaaatgattgtaaaacaatttcttccagAAGCCTCATTTCT-GAACAAGG--TC-A-AT-GTTC---ATT----TGATTC-ACTGATTA------A-AA-----C--TGAAGTTCAGCGAGA--TATTTAGCATGCACTGG
gi|13284 : attattactgagtaaactaatcaccctttttagattgtttccgtgtacaggtttcaattgaaatgattgtaaaactatttcttgcagAGCCTCGTTTAC-GATTGAGG--TT-T-TACGGAC---ATT----TAAATC-ACTGAATA------G-CA-----T--AGACGTTCAGTGAGA--TATTTTACGTGCACTGG
gi|13285 : taacacccttcttttccttatactgcacagggtccaatatggagcaatgtcatacAAGTCTCGTTTCC-GAGGGAGG--TT-T-A-CGGGC---ATC----TGAATC-ACTGATTA------A-AA-----T--AGAAGTTCAGTGA-A--TGCTTTACGTGCACTGG
gi|13286 : tcaatgaactgataattatcggAAACCTCATTTTA-GAGGGAGG--TT-T-A-CAGGC---ATT----TGAATC-ACTGATTA------A-CA-----T--AGAAGTT--G-GAGA--TCTTTTACATGCATTGG
gi|13287 : caatcatgaaatgattattacaggCCCGTTTCA-GAGGGAGG--TT-G-A-CGGGC---ATT----TTAATC-ACTGAATA------A-CA-----T--AAAAGTTCAGTGCGA--TATTTTCCATACATTG
gi|13288 : caatgaaatgattattattgaaattAAGTCTCATTATT-AAGCGAGG--TT-T-AT-GGGC---ATT----TGAGTC-ATTTATTA------A-GG-----T--AGTTGTTCTGTGAAA--TATTTTACATGCACTG
gi|13289 : attaaagaactgattactacaggAGCCTCGTTTCT-GAGGAAGG--TT---A-CGGGC---ATTAATTTGAATC-ACTGATTACCTATAA-CA-----A--AGATGTTTAGTGTGA--TCTTTTACCTGCA
gi|13290 : attgtgaattgattattacaggcAAGCCTTGTTTCA-GAGAGAAG--TT-T-CT-GAGT---ATT----AGAATC-GCTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TCTTTTACATGCACTGG
gi|13291 : aattattattggGCCTCATTTCT-AAGGGAGG--TT-T-AT-GGGC---ATT----TGCATC-ACTGATTA------A-CT-----T----GAGTTCAGTGAGA--TCTACAATGTGCACTGG
gi|13292 : tatgttattataggatAAGCCCCATTCCT-GAGAGAGTATTT-T-AATG-------TC----TGATTTTATTAATTA--------CA-----T--AGAAGTTCAGTGAGA--TATTTTACATGCACTGG
gi|13293 : tacttctagccactgAAGCCTCTTTTCC-GAGGGAGG--TT-T-AT-GGGC---ATT----TGAATC-ACTGATT----------------------AGTTCTACGAGA--TATTTTACATGCACTGG
gi|13294 : attactttaggAAGCCTCGTTTTTCGGGGAAAG--TT-T---CAG-C---ATT----TAAATC-ACTGATTA------A-CA-----T--AGAAGTTCAGCAAGA--TCTTTTGCATGCATT
gi|13295 : ttattatagaAAGCCTCATTTCA-GAGGGAGG--TT-T-AT-GGGC---ATT----TGCATC-AC------------------------AGAAGTTCAGTCAGA--TCTTTTACATGCACT
gi|13296 : ttattacaggAAGACTCATTTCA-GAGGGAGG--TA-T-A-CGAGC---AAT----TGCATC-ACCGATTA------A-TA-----C--AGATGTTCAGTGAGA--TCTTTTACAAGCAATG
gi|13297 : ttattacaggAAGCCTCATTTCT-GAGGAAAG--TT-T--TCAGAC---ATT----TGAATC-ACTAATTA------A-CA-----T--AGAAGTTCTGCGACA--CATTTTACCTACACTGG
gi|13298 : ttacaggGCCTCATTTCT-GAGGGGGG--TT-T-A-AGGGC---ATT----TGCATC-ACTGAT--------G-CA-----T--AGGAGTTCAGCGAGA--TATTTTATGTGCAATGG
gi|13299 : ttatagaatAAGCCTTGTTTCT-GATGGAGT--TT-T-A-CAGTC---ATT----TGAATC-ACTGATTA--------CA-----C--AGAAGTTCAGTGAGA--TCTTTTGCAAACACAGG
gi|13300 : gAAGCTTCGTTTCT-AAGGAAGG--CT-T-A-CGGGC---ATT----TGCATC-ACTGATTA------A-CA-----G--AGAAGTTCAGTAAGA--TATTTTACGTGAAATGG
gi|13301 : gAAGCCTTAATTCT-GAGGGAGA--TT-T--TCAGGC---ATT----TGAACT-GCTGATTA------C-CA-----T--AGAAGTTCAGTGAGA--TATTTTACATACACTGG
gi|13302 : gTTTCT-GAGGGAAG--TT-T-A-CGGTC---ATT----TGCATC-ACTGATTA------A-CAATTACC--GGTAATTCAGTGAGA--TCTTTCACGTGCACTGG
gi|13303 : gaaacgtaaAAACCT-GTTTCT-GAGGAAGG--TT-T-A-CAGGC---ATT----TGAATT-GTTGACTA------T-CA-----A--AGAAGTTCAGTGAGA--TCTTTTATATGCACTGG
gi|13304 : gAGGTCTCGGTTAT-GAGAGAGG--TT-A-A-CGGGC---TTT----TGCGTC-ACTAATTA------A-CA-----T--AGAAGTTCAATGAGA--TATGTTATATGCACTAG
gi|13305 : gAAGCCTCATTTTC-AAGGGAGG--TT-T-A-CGGGC---ATT----TGCATC-ACTGGT----------------------AAGTCCAGCGAGA--TATTTTACGCGCACTGG
gi|13306 : gAAGCCTCATTTCA-GAGGGAGG--TT-T-ATCGGGC---AGT----TGAATC-GCTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TCTTTTACGTGCACTGG
gi|13307 : AAGCCTCCCTTCT-GAGGGAGG--TT-T-A-CGGGC---ATT----TGCATC-ACTGATTT------A-CA-----T--TGAAGTTCAGTGAGATCTCTTTTACATGCGCTGG
gi|13308 : AAGCCTCGTTTCA-AAGGGAGG--TT-T-AT-AGCC---ATT----TACATC-ACTGATTA------A-CA-----C--AGAAGTTCAGTGAGA--TC-TTCACATG
gi|13309 : AGCCTCGTTTAC-GAGAT-----TT-T-A-CGTGC---ATT----TAAATC-ACTGATTA------A-CA-----T--AGAAGTTCAGTGAGA--TATTTTATGTGCACTG
gi|13310 : TTTTT-GAGGGAGG--CTCT-AT-GGGCGTAATT----TGG-TC-ACTGTTTA------AACA-----C--AGAAGTTCAGTGAGA--TCGTTTACGTGCACTGG
gi|13311 : G--TT-T-A-CACGC---ATT----TGAATC-ACTCATTC------A-CA-----T--TGAAGTTCAGTGAGA--TCATTTACATGCATTGG
gi|13312 : tgcacaacgttcacatAGG--AT-T-A-CTGGC---ACT----TGCATC-ACTGATTA------A-CA--------AATAGTTCAGTGAGA--TATTTCATGTTCACTGG
gi|13313 : tgcacAGG--TT-TTAT-GGGC---ATT----TGAATC-ACTGATAA------A-CA-----CACAGAAGTTCAGTGAGA--TCTTCTACGTGCAATGG
gi|13314 : tgcacAGG--TT-T-A-CGGGC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGAAGTTCAATGAGA--TATTTTACATGCACT
gi|13315 : acacC---ATG----TGAATC-ACTTAATA------A-CA-----C--AGAAGATCAGTGAGA--TATTTTACATGCACTGG
gi|13316 : tC---ATT----TGAATC-ACTGATTA------A-CA-----C--AGACGTTCAGTGAGA--TCTTGTACGTGCGCTG
gi|13317 : C---ATT----TAAATC-ACTGATTA------A-TA-----T--AGAAGTTCAGCGAGA--TCCTTATTGTACACTGG
gi|13318 : ---ATT----TGAATC-ACTGATTA------A-CA-----C--AGACGTTCAGTGAGA--TC-TTTATGTGCACTGG