lowQualScore : 11 111
lowQualScore : 11 88 3 11 0 0 0 666 33 5
lowQualScore : .. .. . .. . . . ... .. .
lowQualScore : 33 00 6 66 7 7 7 333 66 1
consensus : ATTACTGAGCCAGTTA--GCACGCCC-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
Reference ( gi|44125 ) : ATTACTGAGCCAGTTA--GCACATCC-TTGAATCAGCCAGC-AGGC-T-AT-TACTT--AA-CCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44132 : ATTACTGTGTCAGTTA--GCACATCC-TTAAATCAGCCAGC-ATGC-T-AT-TACTA--AG-CCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCTTTGAATCA
gi|44126 : ATTACTAAGCCAGTTA--GCACACCC-TTGAATCAGCTAGC-TGGC-T-AT-TACTA--AG-CCATTTAATTGGCTGTTACTGAGTCAGTTAGCACGCCATTGAATCA
gi|44124 : ATTACTGTGCCAGTAA--GTACGACC-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CAAGTTAGTTGGCTATTATTGAGCCAGTTAGCACGCCATTGAATCA
gi|44116 : ATTACTGAGCCAGTTA--GCACATCC-TTGAATCAGCCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44129 : ATTACTGAGCCAGTTA--ACACACCC-TTGAATCAGCCAGC-TGAC-T-AT-TACTA--AG-CCTGTTAGTTGTCTATT
gi|44115 : ATTACTGAGCCAGTTA--GCACACCC-TTGAATCAGCCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44123 : ATTAATGAGCCAGTTA--GCACATCC-TTGAATCAGCCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44120 : ATTACTGAGCCAGTTA--GCACACCC-TTGAATCAGTCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44119 : ATTACTAAGCCAGTTA--GCACACCC-TTGAATCAGCCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44118 : ATTACTAAGCCAGTTA--GCACACCC-TTGAATCAGCCAGC-TGGC----------------------NNNNNNNNNNTACTGTGCCAGTTAGCACGACCTTGAATCA
gi|44105 : ATTACTGAGCCAGTTA--GCACACCT-TTGAATCAGCCAGT-TGGC-T-AT-TACTA--AG-CCAGTTA-----------------------GCACACCCTTGAATCA
gi|44101 : ATTACTGAGCCAGTTA--GCACGCCA-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAG
gi|44104 : ATTATTGAGCCAGTTA--GCACGCCA-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAGCT---CACCACTGAATCAcacgccactgaatca
gi|44112 : ATTACTGAGCCAGTAA--GCACGCCC-TTGATTAAGCC------------------------------AGCTGGCTATTACTGAGCCAGTTAGCACATCCTTGAATCA
gi|44109 : ATCACTGAGCCAGTTA--GCACACCT-TTGAATCAGCCAGT-TGGC-T-AT-TACTA--AG-CCAGTTA-----------------------GCACACCCTTGAATCA
gi|44110 : ATTACTGAGCCAGTTA--GCACACCT-TTGAATCAACCAGT-TGGC-T-AT-TACTA--AG-CCAGTTA-----------------------GCACACCCTTGAATCA
gi|44106 : ATTACTAAGTCAGTTA--GCACGCCA-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAG
gi|44102 : ATTACTGAGCCAGTTA--GCACGCCA-CTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAGcacatccttgaatca
gi|44127 : ATTACTAAGCCAGTTA--GCACACCC-TTGAATCAGCCTGC-TGGC-T-AT-TACTA--AG-CCAGTTAcatgcctttgaatca
gi|44121 : ATTACTGCGCCAGTTA--GCAC-TCCATTGAATCA---------------------------TCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACGCTCTTGAAT
gi|44130 : ATTACTGAGCCAGTAA--GCACACAC-TTGAATCAGTCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44107 : ATTACTGAGCCAGTCA--GCACGCCC-TTGAATCAGCCAGT-TGGC-T-AA-TACTG--AG-CCAGTTAG
gi|44098 : ATTACTGTGCCAGTTA--GCACGACC-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--CG-CCAGTTAGcacatccttgaatca
gi|44108 : ATTACTGAGCCAGTTA--GCTCACCA-CTGAATCAACCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAGCACGCCATTcactccattgaatca
gi|44100 : ATTACTGAGCCAGTTA--GCACAACT-TTGAATCAGCCAGC-TGGT-T-AT-TACTG--CG-TCAGTTAGgaatca
gi|44131 : ATTACTGCGCCAGTTA--GCAC-TCCATTGAATCAGTCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAGcactccattgaatca
gi|44128 : ATTACTGAGCCAGTTA--GCACGCTC-TTGAATGAACCGGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44133 : ATTACTGCGCCATTTA--GCAC-TCCATTGAATCA--------------------TC--AG-CTAGCTGGCTGGCTATTACTGAGCCAGTCAGCGTGCCCTTAAATCA
gi|44103 : ATTACCGTGCCAGTTA--GCACGACC-TTGAATCAGCCAGA-TGGC-T-AT-TACTA--AG-CCAGTTA-----------------------GCACACCCTTGAATCA
gi|44114 : ATTACTGAGCCAGTCA--GCGTGCCC-TTAAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTAAG
gi|44099 : ATTACTGTGCCAATTA--GCACGACC-TTGAATCAGCCAGC-TGGT-T-AT-TACTG--CG-CCAGTTAGcgtgcccttgaatca
gi|44113 : ATTACTGAGCCAGTAA--GCGTGCCC-TTGAATCAGCCAGA-TGGC-T-AT-TACTG--AG-CCAGTTAcactccattgaatca
gi|44117 : ATTACTGTGCCAGTAA--GCACGCCC-TTGA------------------------TT------CAGCCAGCTGGCTATTACTGAGCCAGTAAGCACACACTTGAATCAacgcgcccttgaatca
gi|44139 : ATTACTGAGCCAGTTA--GCACAACT-TTGAATCA
gi|44134 : gcacgccattgaatcagccagctggctATTACTGCGTCAGTTA--GCAC-TCCATTGAATCA-TCAGC-AAGC-T------------------------GGGTATTACTGAGCCAGTTAGGGTGCACTTAAATCA
gi|44122 : ATTACTGAGCCAGTTAGGGTGCA--C-TTAAATCAGCCAGC-TGGT-T-AT-TACTG--TG-TCAGTTAG
gi|44111 : ATTACTGAGCCAGTTA--GCATGCCT-TTGAATCAG-GACT-TGGC-T-AT-TACT-----------------GC---------GCCATTTAGCACTCCATTGAATCAcacatccttaaatca
gi|44138 : ATTACGGAGTCAGTTA--GCGCGTCC-ATGAACCA
gi|44135 : cctgtcagtgcgcccttgaatcagccagctggttTTACTGAGTCAGTTA--GCACGCCA-TTGAATCAGCCAGC-TGGC-T-AT-TAATG--AG-CCAGTTAG
gi|44137 : TACTGAGCCAGTTA--GCACATCC-TTGAATCAGCCAGC-TGGC-T-AT-TACTT--GA--CAGTTTGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCAcacatccttgaatca
gi|44136 : TACTGTGCCAGTTA--GCACGACC-TTGAATCAGCCAGC-TGGC-T-AT-TACTA--AG-CCAGTTAG
gi|44138 : CCTGTCA--GTGCGCCC-TTGAATCAGCCAGC-TGGT-T-AT-TACGG--AG-TCAGTTAG
gi|44139 : --GCACGCCA-TTGAATCAGCCAGC-TGGC-T-AT-TACTG--AG-CCAGTTAGcgcgtccatgaacca
gi|44104 : -TTGAGCCAGTTAGC-ACGC-C-AT-TG-----AA-TCAGCCAGCTGGCTATTACTGAGCCAGTTAGCTCACCACTGAATCAcacaactttgaatca
gi|44101 : attaTGAGCCAGTTAGC-ACGC-C-AT-TG-----AA-TCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACGCCACTGAATCA
gi|44106 : attacTAAGTCAGTTAGC-ACGC-C-AT-TG-----AA-TCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACATCCTTGAATCA
gi|44102 : attacTGAGCCAGTTAGC-ACGC-C-A----CTG--AA-TCAGCCAGCTGGCTATTACTGAGCCAGTTAGCATGCCTTTGAATCA
gi|44135 : attacTGAGTCAGTTAGC-ACGC-C-AT-TG-----AA-TCAGCCAGCTGGCTATTAATGAGCCAGTTAGCACATCCTTGAATCA
gi|44107 : ttacTGAGCCAGTCAGC-ACGC-C------CTTG-AA-TCAGCCAGTTGGCTAATACTGAGCCAGTTAGCACATCCTTGAATCA
gi|44114 : attacTGAGCCAGTCAGC-GTGC-C-CT-TA-----AA-TCAGCCAGCTGGCTATTACTGAGCCAGTAAGCGTGCCCTTGAATCA
gi|44130 : attacAGCCAGT-AAGC---ACACACTTG-AA-TCAGTCAGCTGGCTATTACTAAGCCAGTTAG
gi|44108 : attactgAGCCAGT-TAGC-TCAC-CACTG--AA-TCAACCAGCTGGCTATTACTGAGCCAGTTAGCACGCCATTGAATCA
gi|44100 : attactgAGCCAGT-TAGC---AC-AACTTTGAA-TCAGCCAGCTGGTTATTACTGCGTCAGTTAGCACTCCATTGAATCA
gi|44113 : attactgAGCCAGT-AAGCGT-GC-C-CTTG-AA-TCAGCCAGATGGCTATTACTGAGCCAGTTAACGCGCCCTTGAATCA
gi|44122 : attactgAGCCAGTTAGGG-T-GC--ACTT--AAATCAGCCAGCTGGTTATTACTGTGTCAGTTAGCACATCCTTAAATCA
gi|44139 : attactgGC-ACGC-C-AT-TG-----AA-TCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACAACTTTGAATCA
gi|44138 : CTTG-AA-TCAGCCAGCTGGTTATTACGGAGTCAGTTAGCGCGTCCATGAACCA
gi|44116 : cctgtcagtgcgccATTACTGAGCCAGTTAGCACATCCTTGAATCA
gi|44129 : ATTACTGAGCCAGTTAACACACCCTTGAATCAgccagctggctattactaagccagttag
gi|44115 : ATTACTGAGCCAGTTAGCACACCCTTGAATCAgccagctgactattactaagcctgttagttgtctatt
gi|44123 : ATTAATGAGCCAGTTAGCACATCCTTGAATCAgccagctggctattactaagccagttag
gi|44120 : ATTACTGAGCCAGTTAGCACACCCTTGAATCAgccagctggctattactaagccagttag
gi|44119 : ATTACTAAGCCAGTTAGCACACCCTTGAATCAgtcagctggctattactaagccagttag
gi|44127 : ATTACTAAGCCAGTTAGCACACCCTTGAATCAgccagctggctattactaagccagttag
gi|44130 : ATTACTGAGCCAGTAAGCACACACTTGAATCAgcctgctggctattactaagccagtta
gi|44098 : ATTACTGTGCCAGTTAGCACGACCTTGAATCAgtcagctggctattactaagccagttag
gi|44131 : ATTACTGCGCCAGTTAGCACTCCATTGAATCAgccagctggctattactgcgccagttagcactccattgaatca
gi|44128 : ATTACTGAGCCAGTTAGCACGCTCTTGAATgtcagctggctattactaagccagttag
gi|44099 : ATTACTGTGCCAATTAGCACGACCTTGAATCAgaaccggctggctattactaagccagttag
gi|44136 : TACTGTGCCAGTTAGCACGACCTTGAATCAgccagctggttattactgcgccagttagcactccattgaatca
Alignments
lowQualScore : 0 222 0 0
lowQualScore : . ... . .
lowQualScore : 5 333 9 2
consensus : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
Reference ( family-536 ) : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
gi|44098 : ATTACTGTGCCAGTTAGCACGACCTTGAATCA---GCCAGCTGGCTATTAC-TGCGCCAGTTAGC
gi|44098 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44099 : attactgtgccagttagcacgaccttgaatcagccagctggctATTACTGTGCCAATTAGCACGACCTTGAATCA---GCCAGCTGGTTATTAC-TGCGCCAGTTAGC
gi|44099 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44100 : attactgtgccaattagcacgaccttgaatcagccagctggttATTACTGAGCCAGTTAGCACAACTTTGAATCA---GCCAGCTGGTTATTAC-TGCGTCAGTTAGC
gi|44100 : ATTACTGCGTCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44101 : attactgagccagttagcacaactttgaatcagccagctggttATTACTGAGCCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCACGC---CACTGAATCA
gi|44102 : ATTACTGAGCCAGTTAGCACGCCACTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44102 : ATTACTGAGCCAGTTAGCATGCCTTTGAATCA---atgcctttgaatca
gi|44103 : attactgagccagttagcacgccactgaatcagccagctggctATTACCGTGCCAGTTAGCACGACCTTGAATCA---GCCAGATGGCTATTAC-TAAGCCAGTTAGC
gi|44103 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44104 : attaccgtgccagttagcacgaccttgaatcagccagatggctATTATTGAGCCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCT---CACCACTGAATCA
gi|44105 : ATTACTGAGCCAGTTAGCACACCTTTGAATCA---GCCAGTTGGCTATTAC-TAAGCCAGTTAGC
gi|44105 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44106 : attactgagccagttagcacacctttgaatcagccagttggctATTACTAAGTCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44106 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44107 : attactaagtcagttagcacgccattgaatcagccagctggctATTACTGAGCCAGTCAGCACGCCCTTGAATCA---GCCAGTTGGCTAATAC-TGAGCCAGTTAGC
gi|44107 : TACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44108 : attactgagccagtcagcacgcccttgaatcagccagttggctaaATTACTGAGCCAGTTAGCTCACCACTGAATCA---ACCAGCTGGCTATTAC-TGAGCCAGTTAGCACGCCATT
gi|44109 : ATCACTGAGCCAGTTAGCACACCTTTGAATCA---GCCAGTTGGCTATTAC-TAAGCCAGTTAGCgaatca
gi|44109 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44110 : atcactgagccagttagcacacctttgaatcagccagttggctATTACTGAGCCAGTTAGCACACCTTTGAATCA---ACCAGTTGGCTATTAC-TAAGCCAGTTAGC
gi|44110 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44111 : attactgagccagttagcacacctttgaatcaaccagttggctATTACTGAGCCAGTTAGCATGCCTTTGAATCA---G-GACTTGGCTATTAC-TGCGCCATTTAGC
gi|44111 : ATTACTGCGCCATTTAGCACTCCATTGAATCA---actccattgaatca
gi|44112 : attactgagccagttagcatgcctttgaatcaggacttggctATTACTGAGCCAGTAAGCACGCCCTTGATTAA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44112 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44113 : attactgagccagtaagcacgcccttgattaagccagctggctATTACTGAGCCAGTAAGCGTGCCCTTGAATCA---GCCAGATGGCTATTAC-TGAGCCAGTTAAC
gi|44113 : ATTACTGAGCCAGTTAACGCGCCCTTGAATCA---gcgcccttgaatca
gi|44114 : attactgagccagtaagcgtgcccttgaatcagccagatggctATTACTGAGCCAGTCAGCGTGCCCTTAAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTAAGC
gi|44114 : ATTACTGAGCCAGTAAGCGTGCCCTTGAATCA---gtgcccttgaatca
gi|44115 : attactgagccagtcagcgtgcccttaaatcagccagctggctATTACTGAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44116 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44117 : ATTACTGTGCCAGTAAGCACGCCCTTGATTCA---GCCAGCTGGCTATTAC-TGAGCCAGTAAGC
gi|44117 : ATTACTGAGCCAGTAAGCACACACTTGAATCA---acacacttgaatca
gi|44118 : attactgtgccagtaagcacgcccttgattcagccagctggctATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGC-----------------NNNNNNNNNNTACTGTGCCAGTTAGCACGACCTTGAATCA
gi|44119 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44120 : ATTACTGAGCCAGTTAGCACACCCTTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44121 : ATTACTGCGCCAGTTAGCACTCCATTGAATCATCAGCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44121 : ATTACTGAGCCAGTTAGCACGCTCTTGAATacgctcttgaat
gi|44122 : attactgcgccagttagcactccattgaatcatcagccagctggctATTACTGAGCCAGTTAGGGTGCACTTAAATCA---GCCAGCTGGTTATTAC-TGTGTCAGTTAGC
gi|44122 : ATTACTGTGTCAGTTAGCACATCCTTAAATCA---acatccttaaatca
gi|44123 : attactgagccagttagggtgcacttaaatcagccagctggttATTAATGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44124 : ATTACTGTGCCAGTAAGTACGACCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCAAGTTAGTTGGCTATTATTGAGCCAGTTAGCACGCCATTGAATCA
gi|44125 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCAGGCTATTAC-TTAACCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44126 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCTAGCTGGCTATTAC-TAAGCCATTTAATTGGCTGTTACTGAGTCAGTTAGCACGCCATTGAATCA
gi|44127 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCTGCTGGCTATTAC-TAAGCCAGTTA
gi|44128 : ATTACTGAGCCAGTTAGCACGCTCTTGAATGA---ACCGGCTGGCTATTAC-TAAGCCAGTTAG
gi|44129 : ATTACTGAGCCAGTTAACACACCCTTGAATCA---GCCAGCTGACTATTAC-TAAGCCTGTTAGTTGTCTATT
gi|44130 : ATTACTGAGCCAGTAAGCACACACTTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44131 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44132 : ATTACTGTGTCAGTTAGCACATCCTTAAATCA---GCCAGCATGCTATTAC-TAAGCCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCTTTGAATCA
gi|44133 : ATTACTGCGCCATTTAGCACTCCATTGAATCA----TCAGCTAGCTG----------------GCTGGCTATTACTGAGCCAGTCAGCGTGCCCTTAAATCA
gi|44134 : ATTACTGCGTCAGTTAGCACTCCATTGAATCATCAGCAAGCTGGGTATTAC-TGAGCCAGTTAG
gi|44134 : ATTACTGAGCCAGTTAGGGTGCACTTAAATCA---ggtgcacttaaatca
gi|44135 : attactgcgtcagttagcactccattgaatcatcagcaagctgggtTTACTGAGTCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAA-TGAGCCAGTTAGC
gi|44135 : ATTAATGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44136 : ttactgagtcagttagcacgccattgaatcagccagctggctTACTGTGCCAGTTAGCACGACCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44137 : TACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTACTTGA--CAGTTTGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44138 : CCTGTCAGTGCGCCCTTGAATCA---GCCAGCTGGTTATTAC-GGAGTCAGTTAGC
gi|44138 : ATTACGGAGTCAGTTAGCGCGTCCATGAACCA---gcgtccatgaacca
gi|44139 : cctgtcagtgcgcccttgaatcagccagctggttGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44139 : AT-TGAATCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACAACTTTGAATCAacaactttgaatca
Alignments
lowQualScore : 0 222 0 0
lowQualScore : . ... . .
lowQualScore : 5 333 9 2
consensus : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
Reference ( family-536 ) : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
gi|44098 : ATTACTGTGCCAGTTAGCACGACCTTGAATCA---GCCAGCTGGCTATTAC-TGCGCCAGTTAGC
gi|44098 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44099 : attactgtgccagttagcacgaccttgaatcagccagctggctATTACTGTGCCAATTAGCACGACCTTGAATCA---GCCAGCTGGTTATTAC-TGCGCCAGTTAGC
gi|44099 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44100 : attactgtgccaattagcacgaccttgaatcagccagctggttATTACTGAGCCAGTTAGCACAACTTTGAATCA---GCCAGCTGGTTATTAC-TGCGTCAGTTAGC
gi|44100 : ATTACTGCGTCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44101 : attactgagccagttagcacaactttgaatcagccagctggttATTACTGAGCCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCACGC---CACTGAATCA
gi|44102 : ATTACTGAGCCAGTTAGCACGCCACTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44102 : ATTACTGAGCCAGTTAGCATGCCTTTGAATCA---atgcctttgaatca
gi|44103 : attactgagccagttagcacgccactgaatcagccagctggctATTACCGTGCCAGTTAGCACGACCTTGAATCA---GCCAGATGGCTATTAC-TAAGCCAGTTAGC
gi|44103 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44104 : attaccgtgccagttagcacgaccttgaatcagccagatggctATTATTGAGCCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCT---CACCACTGAATCA
gi|44105 : ATTACTGAGCCAGTTAGCACACCTTTGAATCA---GCCAGTTGGCTATTAC-TAAGCCAGTTAGC
gi|44105 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44106 : attactgagccagttagcacacctttgaatcagccagttggctATTACTAAGTCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44106 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44107 : attactaagtcagttagcacgccattgaatcagccagctggctATTACTGAGCCAGTCAGCACGCCCTTGAATCA---GCCAGTTGGCTAATAC-TGAGCCAGTTAGC
gi|44107 : TACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44108 : attactgagccagtcagcacgcccttgaatcagccagttggctaaATTACTGAGCCAGTTAGCTCACCACTGAATCA---ACCAGCTGGCTATTAC-TGAGCCAGTTAGCACGCCATT
gi|44109 : ATCACTGAGCCAGTTAGCACACCTTTGAATCA---GCCAGTTGGCTATTAC-TAAGCCAGTTAGCgaatca
gi|44109 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44110 : atcactgagccagttagcacacctttgaatcagccagttggctATTACTGAGCCAGTTAGCACACCTTTGAATCA---ACCAGTTGGCTATTAC-TAAGCCAGTTAGC
gi|44110 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44111 : attactgagccagttagcacacctttgaatcaaccagttggctATTACTGAGCCAGTTAGCATGCCTTTGAATCA---G-GACTTGGCTATTAC-TGCGCCATTTAGC
gi|44111 : ATTACTGCGCCATTTAGCACTCCATTGAATCA---actccattgaatca
gi|44112 : attactgagccagttagcatgcctttgaatcaggacttggctATTACTGAGCCAGTAAGCACGCCCTTGATTAA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44112 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44113 : attactgagccagtaagcacgcccttgattaagccagctggctATTACTGAGCCAGTAAGCGTGCCCTTGAATCA---GCCAGATGGCTATTAC-TGAGCCAGTTAAC
gi|44113 : ATTACTGAGCCAGTTAACGCGCCCTTGAATCA---gcgcccttgaatca
gi|44114 : attactgagccagtaagcgtgcccttgaatcagccagatggctATTACTGAGCCAGTCAGCGTGCCCTTAAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTAAGC
gi|44114 : ATTACTGAGCCAGTAAGCGTGCCCTTGAATCA---gtgcccttgaatca
gi|44115 : attactgagccagtcagcgtgcccttaaatcagccagctggctATTACTGAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44116 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44117 : ATTACTGTGCCAGTAAGCACGCCCTTGATTCA---GCCAGCTGGCTATTAC-TGAGCCAGTAAGC
gi|44117 : ATTACTGAGCCAGTAAGCACACACTTGAATCA---acacacttgaatca
gi|44118 : attactgtgccagtaagcacgcccttgattcagccagctggctATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGC-----------------NNNNNNNNNNTACTGTGCCAGTTAGCACGACCTTGAATCA
gi|44119 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44120 : ATTACTGAGCCAGTTAGCACACCCTTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44121 : ATTACTGCGCCAGTTAGCACTCCATTGAATCATCAGCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44121 : ATTACTGAGCCAGTTAGCACGCTCTTGAATacgctcttgaat
gi|44122 : attactgcgccagttagcactccattgaatcatcagccagctggctATTACTGAGCCAGTTAGGGTGCACTTAAATCA---GCCAGCTGGTTATTAC-TGTGTCAGTTAGC
gi|44122 : ATTACTGTGTCAGTTAGCACATCCTTAAATCA---acatccttaaatca
gi|44123 : attactgagccagttagggtgcacttaaatcagccagctggttATTAATGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44124 : ATTACTGTGCCAGTAAGTACGACCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCAAGTTAGTTGGCTATTATTGAGCCAGTTAGCACGCCATTGAATCA
gi|44125 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCAGGCTATTAC-TTAACCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44126 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCTAGCTGGCTATTAC-TAAGCCATTTAATTGGCTGTTACTGAGTCAGTTAGCACGCCATTGAATCA
gi|44127 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCTGCTGGCTATTAC-TAAGCCAGTTA
gi|44128 : ATTACTGAGCCAGTTAGCACGCTCTTGAATGA---ACCGGCTGGCTATTAC-TAAGCCAGTTAG
gi|44129 : ATTACTGAGCCAGTTAACACACCCTTGAATCA---GCCAGCTGACTATTAC-TAAGCCTGTTAGTTGTCTATT
gi|44130 : ATTACTGAGCCAGTAAGCACACACTTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44131 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44132 : ATTACTGTGTCAGTTAGCACATCCTTAAATCA---GCCAGCATGCTATTAC-TAAGCCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCTTTGAATCA
gi|44133 : ATTACTGCGCCATTTAGCACTCCATTGAATCA----TCAGCTAGCTG----------------GCTGGCTATTACTGAGCCAGTCAGCGTGCCCTTAAATCA
gi|44134 : ATTACTGCGTCAGTTAGCACTCCATTGAATCATCAGCAAGCTGGGTATTAC-TGAGCCAGTTAG
gi|44134 : ATTACTGAGCCAGTTAGGGTGCACTTAAATCA---ggtgcacttaaatca
gi|44135 : attactgcgtcagttagcactccattgaatcatcagcaagctgggtTTACTGAGTCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAA-TGAGCCAGTTAGC
gi|44135 : ATTAATGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44136 : ttactgagtcagttagcacgccattgaatcagccagctggctTACTGTGCCAGTTAGCACGACCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44137 : TACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTACTTGA--CAGTTTGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44138 : CCTGTCAGTGCGCCCTTGAATCA---GCCAGCTGGTTATTAC-GGAGTCAGTTAGC
gi|44138 : ATTACGGAGTCAGTTAGCGCGTCCATGAACCA---gcgtccatgaacca
gi|44139 : cctgtcagtgcgcccttgaatcagccagctggttGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44139 : AT-TGAATCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACAACTTTGAATCAacaactttgaatca
blockSeqs : TCA
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blockSeqCons :
originalCons : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
finalCons : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
Alignments
lowQualScore : 0 222 0 0
lowQualScore : . ... . .
lowQualScore : 5 333 9 2
consensus : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
Reference ( family-536 ) : ATTACTGAGCCAGTTAGCACGCCCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCTGGCTATTACTGAGCCAGTTAGCACGCCCTTGAATCA
gi|44098 : ATTACTGTGCCAGTTAGCACGACCTTGAATCA---GCCAGCTGGCTATTAC-TGCGCCAGTTAGC
gi|44098 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44099 : attactgtgccagttagcacgaccttgaatcagccagctggctATTACTGTGCCAATTAGCACGACCTTGAATCA---GCCAGCTGGTTATTAC-TGCGCCAGTTAGC
gi|44099 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44100 : attactgtgccaattagcacgaccttgaatcagccagctggttATTACTGAGCCAGTTAGCACAACTTTGAATCA---GCCAGCTGGTTATTAC-TGCGTCAGTTAGC
gi|44100 : ATTACTGCGTCAGTTAGCACTCCATTGAATCA---actccattgaatca
gi|44101 : attactgagccagttagcacaactttgaatcagccagctggttATTACTGAGCCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCACGC---CACTGAATCA
gi|44102 : ATTACTGAGCCAGTTAGCACGCCACTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44102 : ATTACTGAGCCAGTTAGCATGCCTTTGAATCA---atgcctttgaatca
gi|44103 : attactgagccagttagcacgccactgaatcagccagctggctATTACCGTGCCAGTTAGCACGACCTTGAATCA---GCCAGATGGCTATTAC-TAAGCCAGTTAGC
gi|44103 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44104 : attaccgtgccagttagcacgaccttgaatcagccagatggctATTATTGAGCCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGCT---CACCACTGAATCA
gi|44105 : ATTACTGAGCCAGTTAGCACACCTTTGAATCA---GCCAGTTGGCTATTAC-TAAGCCAGTTAGC
gi|44105 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44106 : attactgagccagttagcacacctttgaatcagccagttggctATTACTAAGTCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44106 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44107 : attactaagtcagttagcacgccattgaatcagccagctggctATTACTGAGCCAGTCAGCACGCCCTTGAATCA---GCCAGTTGGCTAATAC-TGAGCCAGTTAGC
gi|44107 : TACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44108 : attactgagccagtcagcacgcccttgaatcagccagttggctaaATTACTGAGCCAGTTAGCTCACCACTGAATCA---ACCAGCTGGCTATTAC-TGAGCCAGTTAGCACGCCATT
gi|44109 : ATCACTGAGCCAGTTAGCACACCTTTGAATCA---GCCAGTTGGCTATTAC-TAAGCCAGTTAGCgaatca
gi|44109 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44110 : atcactgagccagttagcacacctttgaatcagccagttggctATTACTGAGCCAGTTAGCACACCTTTGAATCA---ACCAGTTGGCTATTAC-TAAGCCAGTTAGC
gi|44110 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---acacccttgaatca
gi|44111 : attactgagccagttagcacacctttgaatcaaccagttggctATTACTGAGCCAGTTAGCATGCCTTTGAATCA---G-GACTTGGCTATTAC-TGCGCCATTTAGC
gi|44111 : ATTACTGCGCCATTTAGCACTCCATTGAATCA---actccattgaatca
gi|44112 : attactgagccagttagcatgcctttgaatcaggacttggctATTACTGAGCCAGTAAGCACGCCCTTGATTAA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44112 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44113 : attactgagccagtaagcacgcccttgattaagccagctggctATTACTGAGCCAGTAAGCGTGCCCTTGAATCA---GCCAGATGGCTATTAC-TGAGCCAGTTAAC
gi|44113 : ATTACTGAGCCAGTTAACGCGCCCTTGAATCA---gcgcccttgaatca
gi|44114 : attactgagccagtaagcgtgcccttgaatcagccagatggctATTACTGAGCCAGTCAGCGTGCCCTTAAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTAAGC
gi|44114 : ATTACTGAGCCAGTAAGCGTGCCCTTGAATCA---gtgcccttgaatca
gi|44115 : attactgagccagtcagcgtgcccttaaatcagccagctggctATTACTGAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44116 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44117 : ATTACTGTGCCAGTAAGCACGCCCTTGATTCA---GCCAGCTGGCTATTAC-TGAGCCAGTAAGC
gi|44117 : ATTACTGAGCCAGTAAGCACACACTTGAATCA---acacacttgaatca
gi|44118 : attactgtgccagtaagcacgcccttgattcagccagctggctATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGC-----------------NNNNNNNNNNTACTGTGCCAGTTAGCACGACCTTGAATCA
gi|44119 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44120 : ATTACTGAGCCAGTTAGCACACCCTTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44121 : ATTACTGCGCCAGTTAGCACTCCATTGAATCATCAGCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44121 : ATTACTGAGCCAGTTAGCACGCTCTTGAATacgctcttgaat
gi|44122 : attactgcgccagttagcactccattgaatcatcagccagctggctATTACTGAGCCAGTTAGGGTGCACTTAAATCA---GCCAGCTGGTTATTAC-TGTGTCAGTTAGC
gi|44122 : ATTACTGTGTCAGTTAGCACATCCTTAAATCA---acatccttaaatca
gi|44123 : attactgagccagttagggtgcacttaaatcagccagctggttATTAATGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44124 : ATTACTGTGCCAGTAAGTACGACCTTGAATCA---GCCAGCTGGCTATTAC-TGAGCAAGTTAGTTGGCTATTATTGAGCCAGTTAGCACGCCATTGAATCA
gi|44125 : ATTACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCAGGCTATTAC-TTAACCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44126 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCTAGCTGGCTATTAC-TAAGCCATTTAATTGGCTGTTACTGAGTCAGTTAGCACGCCATTGAATCA
gi|44127 : ATTACTAAGCCAGTTAGCACACCCTTGAATCA---GCCTGCTGGCTATTAC-TAAGCCAGTTA
gi|44128 : ATTACTGAGCCAGTTAGCACGCTCTTGAATGA---ACCGGCTGGCTATTAC-TAAGCCAGTTAG
gi|44129 : ATTACTGAGCCAGTTAACACACCCTTGAATCA---GCCAGCTGACTATTAC-TAAGCCTGTTAGTTGTCTATT
gi|44130 : ATTACTGAGCCAGTAAGCACACACTTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44131 : ATTACTGCGCCAGTTAGCACTCCATTGAATCA---GTCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44132 : ATTACTGTGTCAGTTAGCACATCCTTAAATCA---GCCAGCATGCTATTAC-TAAGCCAGTTAGTTGGCTATTACTGAGCCAGTTAGCACACCTTTGAATCA
gi|44133 : ATTACTGCGCCATTTAGCACTCCATTGAATCA----TCAGCTAGCTG----------------GCTGGCTATTACTGAGCCAGTCAGCGTGCCCTTAAATCA
gi|44134 : ATTACTGCGTCAGTTAGCACTCCATTGAATCATCAGCAAGCTGGGTATTAC-TGAGCCAGTTAG
gi|44134 : ATTACTGAGCCAGTTAGGGTGCACTTAAATCA---ggtgcacttaaatca
gi|44135 : attactgcgtcagttagcactccattgaatcatcagcaagctgggtTTACTGAGTCAGTTAGCACGCCATTGAATCA---GCCAGCTGGCTATTAA-TGAGCCAGTTAGC
gi|44135 : ATTAATGAGCCAGTTAGCACATCCTTGAATCA---acatccttgaatca
gi|44136 : ttactgagtcagttagcacgccattgaatcagccagctggctTACTGTGCCAGTTAGCACGACCTTGAATCA---GCCAGCTGGCTATTAC-TAAGCCAGTTAG
gi|44137 : TACTGAGCCAGTTAGCACATCCTTGAATCA---GCCAGCTGGCTATTACTTGA--CAGTTTGTTGGCTATTACTGAGCCAGTTAGCACACCCTTGAATCA
gi|44138 : CCTGTCAGTGCGCCCTTGAATCA---GCCAGCTGGTTATTAC-GGAGTCAGTTAGC
gi|44138 : ATTACGGAGTCAGTTAGCGCGTCCATGAACCA---gcgtccatgaacca
gi|44139 : cctgtcagtgcgcccttgaatcagccagctggttGCACGCCATTGAATCA---GCCAGCTGGCTATTAC-TGAGCCAGTTAGC
gi|44139 : AT-TGAATCAGCCAGCTGGCTATTACTGAGCCAGTTAGCACAACTTTGAATCAacaactttgaatca