lowQualScore : 1 222 1111111111111111 2222 3333333333333 111111 1 1
lowQualScore : 4 1 6 1 1 44 1 333 4444444444444444 11 1 1 222 1 3 0000 1 1 3333333 1 22 2222222222222 1 1 6 2 66 000000 5 22 1 7 1 2 11 111 111 1 111 2 222222 5
lowQualScore : . . . . . .. . ... ................ .. . . ... . . .... . . ....... . .. ............. . . . . .. ...... . .. . . . . .. ... ... . ... . ...... .
lowQualScore : 5 5 1 5 5 55 4 888 6666666666666666 77 2 2 111 2 6 3333 1 1 6666666 1 66 6666666666666 1 1 2 1 33 555555 6 55 1 2 0 9 33 777 777 0 777 0 888888 8
consensus : GTGCATTT-CAAAA-AGT-TG-NTA-CATGTT-TATTNCTT---TN-TG----AATT--T-A-A---AT-GAA-ATTTTC-TG-AA-A-------AT-A--TGC-T-----A-N-AATG-AA-TTTGTT-CA-TTA-----GATT--GT-AGATT-AAAATATGAA--AT---T---T-ACA---AACTCGT-G------TTGACGAAATATCAATAAATC
Reference ( gi|17815 ) : GTGCCTTT-CAAGA-AGT-TG-TTA-CATGAC-TATTATTT---TC-TG----AATT--T-A-A---AT-GAA-ATTTCT-TG-AA-A-------AT-A--TGC-T-----A-A-AATG-AA-TCTGTT-CG-TTG-----GAAT--GT-AGGTT-AAAATAGGAA--AT---T---T-ACA---AACTCGT-G------TTGACGAAATACCAATAAATC
gi|17817 : GTGCATTT-TTAGA-AGC-TG-TTA-CATGA--TATTTATT---TC-TGTATAAATT--T-A-A---AT-GAA-ATTTTC-GG-AA-A-------AT-A--TGCGT-----A-T---TG-AA-TATGTT-CA-TTC-----GACT--GT-AGATT-AAAATATGAC--AT---A---T-ACA---GACTCCT-G------TTGACGATATATCAATAAATC
gi|17818 : GTGCATTT-CAAAA-AGT-TG-TAA-TATGCT-TATTTCTG---TC-TG----AATT--T-A-A---AT-GAA-ATTTTC-TG-AA-A-------AA-A--TGC-C-----T-A-AAT--AA-TTTGTT-CA-TTA-----TATT--GT-AGATT-AAACAAAGAA--AT---T---T-ACA---AACT-----------TTCACGAAATATCAATAAATca
gi|17814 : GTGCGTTT-CAAAA-AGT-TG-GTA-CATGCT-TAATTCTG---TC-TG----AATT--T-A-A---AT-G-G-ATTTTA-TG-AA-A-------AT-A--TGC-T-------T-CATG-AA-TTTGTT-CA-TTA-----CATT--GC-AGATA-AAAATATACA--AT---T---T-AC----AACTCTT-G------TTGACGAAACATCAATAAATC
gi|17811 : GTACATTT-TAAAA-AGT-TG-TTA-CTTGCC-TATTTCTG---TT-TG----AATT--T-C-A---GT-TAA-TTTTTTCTG-AA-A-------AT-A--T---T-----ACC-AATG-AA-TTTGTT-CA-TTA-----GATT--GT-AGATTAAAAATATGAA--AT---T---C-ACA---GACTTGT-A------TTGATGAAATATCAATAAATCc
gi|17813 : GTGCATTT-CAAAA-AGT-GA-CTA-CATG-C-T-TTATTT---CT-TGCTT-AATT--T-T-A---AT-GAC-ATTTTC-AG-AA-A-------AT-G--TG--T-----A-C-AATG-AA-TTTGTT-CA-TTA-----GCTT--GT-AGATT-GAAGTATGAC--AT---T---C-ACA---AACACAT-G------TTGACGAAATATCAATAAAca
gi|17816 : GTACATTT-AAAAA-A---TG-TTAACATGCT-TATTCCTG---TC-TG----AATT--T-A-G---AT-GAA-ATTATC-TG-AA-A-------AT-A--TGC-C-----C-A-A-TG-AA-TTTGTT-CA-ATA-----GAGT--GT-AAATT-AAAATATCGA--AT---T---A-GCA---AACTCGT-G------TTGACGAAATGTCAATATAT
gi|17819 : GTGCATTT-CCAAA-AGT-TG-TTT-C-TG--------------TC-TG----AATT--T-A-A---AT-GTA-ATTTTC-TG-AA-A--------T-A--TGC-T-----C-A-A-TG-AA-TTTGTT-TA-TTA-----GATT--GT-GGATA-CGAATATAAA--AT---T---T-ACA---AACTTGT-G------TTAATGGAATATCAATAAATgca
gi|17821 : GCGCATTT-CAAAA-AGC-TG-TCA-CAT-ACATACTTCTG---TA-TG----AATT--A-A-A---AT-CAA-TTTTTC-TA-AA-A-------AT-AA-TTC-T-----A-A---TG-AT-TTTGTT-CA-CTA-----GATT--GT-AGATT-AAAATATAAA--AC---T---T-ACA---AATTCGA-G------TTGACGAAATATTAATAAA
gi|17822 : GTGTATTT-CAATC-AGT-TG-ATA-CCTGTT-TATTGCTT---TC-TT----AATT--G-A-A---CT-----ATTTTC-GG-AT-A-------AC-A--TGC-------A-C-AATG-GA-TTTGTT-CA-TTA-----GATT--AT-AGATT-GAAATAGGAT--AT---T---T-ACA---AACTCGT-G------TTG
gi|17820 : GTGCATTTACAAAA-----TG-GTA-CATGTT-TATTGCTT-------G----A--T--T-A-A---TT-TAA-ATTCCG-T--AA-A-------AT-A--TGC-------A-T-AATA-AA-TTTATT-CA-TTA-----GATC--GT-AGATT-AAAATATGAA---T---T---T----------TTGT-G------TTGACGAAATATCAATAAATC
gi|17823 : GTACATTT-AAAAA-AATATG-TT---------TATTGCTT---CA-TT----AATT--T-A-A---AC-GAA-ATTTAC-GA-AA-A-------AT-A--TAC-T-----C-A-A-CG-A--TTTTTT-CA-TTA-----GATT--GT-AGAT--AAAATGTGAA--AT---T---T-ACA---AACAGGT-A------CTGACGAAATATCACTTAATCca
gi|17824 : GTGCATTA-CAAAA-AGT-TG-GAG-CTTGTA-AATTGCTT---TA-TT----AATA--A-A-T---AT-GAA-ACTTAC-GG-AA-A-------AT-A--TGC-------A-G-AATG-A--TTTATT-TT-ATT-----CAATA-GT-AGATT-AAAATAT-AA--AT---T---A-ACA---AACTCAT-T------TTTGTGAAATATCAATAAATCc
gi|17825 : GTGCATTT-CAAAA-AGT-AG-ATA-CATGTT-TATTACTT---TG-TA----AATT--T-A-A---GT-TTA-ACTTTT-GG-AA-A-------GG-A--TGC-------A-C-TATG-AA-TTTGTT-CA-TTA-----G
gi|17826 : TGCATTT-TAAAA-AGT-TG-GTA-CATGTT-TATTGCTT---TA-TC----AATT--T-A-A---AC-GAA-TTTTCA--G-AA-A-------AC-A--TG--------A-ACAAAG-AA-TGTGTT-CA-TTA-----TA-T--GTTAGATT-AAAATATGAA--AA---T---T-ACA---AGCTCGC-G------TTCACGAAATATCAATAAATC
gi|17830 : TGCATTT-CAAAA-A-T-TG-GTA-AATGTT-TATTGTCT---TA-TA----AATT--T-A-A---GT-GAA-ATTTTT-GG-AA-A-------AT-A--TAC-------A-C-AATG-AA-TTT-TT-CG-TTA-----GAAT--AT-TGATA-CGAATTTG-A--AT---C---T-ACA---AACTCGT-G------TTGTCGAAAAATTAGTAAATCca
gi|17828 : TGCATTT-CAGAA-AGT-TG-TGA-CATAA--------------------------------A---AT-AAA-ATTGTT-TG-AA-A-------AT-A--TGC-------A-C-AATG-AA-TTTATT-CA-TTA-----GATT--GG-AGATG-AGAATATGAA--AT---T---T-ACA---AACTGAT-G------TTGACGAAATATCATTTAATC
gi|17829 : TGCATTT-CAAAC-AGT-TG-TTA-CATGTT-TATTGCAT---TA-TT----ATTT--T-A-AGCAAT-AAA----TCA-GG-AA-A-------AT-A--TGC-------A-C-AATG-AA-TTTGTT-CA-TT-------AATTTGC-AGATT-TAAATATGAA--ATAATT---T-ACA---AACTCCT-G------TTGACAAAATATCAAAAGATCca
gi|17833 : TGCTTTT-CAAAA-TGT-AG-GAA-CAT----T-TTATTTCTGTA-TG----AATT--T-G-G---GT-GATTATTTCA--G-AA-A-------AT-A--TGC-------A-A-AATG-AA-ATTGTT-CT-TTA-----AATC--GC-AGATT-ATGATATAAA--AT---T---TGACA---AGTTCAT-G------TTAAAGAAATATCAATGAACC
gi|17827 : TGCATTT-CAAAA-GGT-TG-GTA-CATTTG-TATT-TCT---TCATG----AATT--T-A-A---ATAAAA-ATTTC---G-AA-A-------A--A--T-C-T-----G-C-AGTG-AA-ACTGTT-
gi|17812 : TTT-CAAAA-AGG-AG-GTA-CATCTC-TATTGCGT---TA-TG----AATT--T-A-A---AT-GA-----TGT-TGTAA-A-------AT-A--TGC-------A-C-AACG-AA-TTTGTT-CA-TTA-----GATT--GT-AGTTT-AAGATTTGAA--AT---T---T-ACA---AACTCGT-G------TTGACCAAATATCAATAAA
gi|17836 : gtgaaTTT-CAAAA-AGT-TG-GTA-CAAGCT-TATTTATT---TC-TG----AACA--T-G-A---AT-AAA-ATTTTC-TC-AA-A-------AT-A--TTC-C-----C-A-A-TG-AA-TTTGTT-CA-TTA-----GATT--TT-AGTTT-CAAATGTGAA--AT---T---T-ACG---GACTCGT-A------TTGACGCAATATCAATAACTCacca
gi|17838 : caTTT-TAAAA-AGC-TA-TTA-CACGTT-GGTTTCTG---TC-TG----AATT--T-A-A---AT-GAA-A-TTAA-TG-AA-A-------AT-A--TGC-C-------C-ATTG-AA-TTTGTT-CA-TTA-----AACT--TT-AGACT-AACAT--TAA--AT---T---T-TCA---AACTCGTGG------TTGGCGAAATATCAATAAATca
gi|17832 : TTT-CAAAA-AGA-TG-TCA-CATAAT-TATTTTGG---TC-TA----AATT--T-TTA---AC-GAA-TTTTCT-T--AA-A-------AT-A--TGC------------GTG-TG-CCTTTT-TG-TTA-----TATT--GT-ATAT------TAGGAG-------------ACG---AATTTGT-G------ATGATAAACTATCAATGAATCtca
gi|17831 : tgaaTTT-CAATA-AAT-TGGCTA-AATAAT-AA--ATTC---TG-TGTA--AATT--T-A-A---AT-GAA-ATTTTC-TA-AA-T-------AT-AAATGC-C-----C-A-A-TA-AA-TGTGTT-TA-CTA-----GATT--AA-AGATA-AAGAAATGAA--AT---A---A-TCA---TACTCGT-G------TTAATGAAATAGCAAGAAAT
gi|17839 : tgtaTTT-CAAAA-TGT-TG-T-A-CATG-----TTGATT---TC-TGTAA-AAAT--C-A-A---AC-GAACATTTCA--G-AA-A-------AT-A--TGC-T-------A-AATA-GT-TTTGTT-TA-TAA-----GATT--GT-AACTT-AAACTATGAAACAT---TCCAT-ATATATAAGT-AT-A------TTGATGAAATATCAATGAACCtca
gi|17840 : -CAAAATAGT-TG-T-A-CATGTT-TATTCCTT---TA-AT----AATT--T-A-G---AT-GAATATTTCA--G-AT-A-------AT-A--TGC-------A-G-GATG-AA-T-TGTTTCA-TTA-----GATT--GC-AGATT-AAACTATGAA--AT---T---A-ACA---AACTCGT-G------TTGAc
gi|17842 : -AAT-TG-ATA-CATGTT-TGGTTTTT---TT-T------ATTATT-A-A---AT-AAG-AT------G-AA-A-------AT-A--TGC-T-----T-A-A-TA-AA--CTGTTTCA-TTA-----GATT--GT-GAATT-AAATTATGAA--AT---------ATA---AATTCGT-GCAACTGTTGATGAAATATCAATAAATC
gi|17843 : A-CGTGTT-TATTGGTT---TA-TT----AATT--T-G-A---AA-AAA-ATC-----G-AACG-------AT-A--TGC-C-----C-A-G-TG-AG-TTTGTT-CA-TTA-----GACT--GT-AG----------------AT---T---T-ACA---A-CTTAT-G------TTGACGAAATATCAATAAATCca
gi|17834 : TATTTC--TC-TC----AAT-----------AT-GAA-ATTC------AA-A-------CA-A--TGT-TTTCAGA-A-AATGTAA-TCAATG-CGATTG-----GA--------GATT-AAAATATGGA--AT---A---A-ACA---AACTCGT-G------TTGACGAc
gi|17844 : tgcatctaaaaaatgtttgtaca---TC-TG----AATT--TCA-A---AA-CAA-CTTTTC-TG-AA-A-------TT-G--TGCGT-----A-A---TG-AA-ATAGTT-CA-TTAATTTAGATT--GT-AGATT-GAAATATGAA--AT---T---G-ACA---AATTTGT-G------TTGACGAAATACCATTAAATCtcaagacatcca
gi|17846 : TT--T-A-A---AT-AAA-ATTTTC-AG-AA-ATATATTTATTA--TGC-------A-C-AATG-AA-TTTGTT-CG-AT---------T--GT-AGATT-AAAACATGAA--AT---T---T-GTA---AACTCGT-A------TTGta
gi|17837 : T--T-A-A---AC-GAT-ATTTTC-AG-AT-T-------AA-A--TGC-------A-C-AGTG-AT-TATGTT-CA-TAA-----GATT--TG-AGATT-AAAATATGAA--AT---T---G-TCA---AACTTGT-G------TTGATGAAATGTCAA
gi|17845 : catttaaaaacatttttatattatgtgtttata---AT-GAA-ATTGAC-GG-GA-A-------AT-G--CACAT-----T-T-AATA-CA-TTTGAT-CA-TTA-----AATT--GT-AGATT-AAAATATGAA--CG---T---T-ACC---AACTCAT-G------TTGACAAAATATCAAT
gi|17847 : aatctTTTCT-TG-AA----------T-A--TG--T-----C-A-AATT-AA-TTTGTT-TT-TTA-----GATT--AA-ATATT-AAT-TATGAT--TT---T---T-ACA---AACCCTTTG------CTTACGTAAAATCAATAAATCtattcca
gi|17841 : taaattTTCC-AG-AA-A-------AT-A--TGC-C-----C-A-A-TG-CA-TTTGTT-TA-GTA-----GATT--GT-AGATT-AAAATACAAA--AT---T---T-ACA---AACTCGT-G------TTGACGTAATATCAATAAATCca
gi|17848 : aaaaagttgttacatgcttaG-GA-A-------AT-A--TG--------A-ACAATG-AA-TTTGGT-CA-TTA-----GATG--GG-AAATT-AAAATATGAA--AT---T---T-ATA---AAGTCGT-G------TTGGCGAAATATCAATAAATCca
gi|17849 : -AATG-AAATTTGAT-CA-TTA-----CATT--AT-AGATT-AAAATATGAA--GT---T---T-ACA---AACTCAC-G------TTGACAAAATTTCAATAAATCc
gi|17850 : TG-AA-TTTACT-CA-ATA-----GATT--GT-ATATA-ATGATATGAA--AT---A---T-TCA---GACTCGT-G------TTGACAGAATATCACTAAATCca
gi|17851 : TGTA-CT-TTA-----AATT--GT-AAACG-AAAATAGGAA--AT---T---T-ACA---AA-TCGT-G------TTGACAAAATATCAATAAATCca
gi|17852 : T--GT-AGGCT-AAAATATGAA--AT---T---A-ACG---AACTCGT-G------TTGACGAAATATAAATAGATCca
gi|17854 : T-AAAACATGAA--AT---T---T-ACA---AACTCGT-A------TTGCCGAAATATCAATAAAc
gi|17853 : -AAAATATGAC--AT---T---T-ACA---AACTTGT-G------TTGATGAAATATTGATAAATC
gi|17855 : gataGAA--AT---T---G-ACA---AACTCGT-G------TTGACAAAATATCAATAAAca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17835 ): TGTATTTCAAAATTTGGTATGTGTTTATTTCTGTATAAATTTTAATGAAACATGGACAATAAATTTTTCATACGATTATAGATTACAAGAAGAAATTTACAAACCAATTTCAATAAATCTA
Alignments
lowQualScore : 33333
lowQualScore : 1 1 1 66 1 333 1 2 1 3 2 11 1 111 1 888 1 1 3333333 1 22 33333 1 1 22222 1 111 11 22222 0 0 222222 1
lowQualScore : . . . .. . ... . . . . . .. . ... . ... . . ....... . .. ..... . . ..... . ... .. ..... . . ...... .
lowQualScore : 3 2 2 33 2 333 4 7 8 3 3 66 1 999 1 777 1 1 4444444 1 55 99999 0 0 55555 0 666 33 33333 9 9 777777 9
consensus : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTATTTCTTTATGAA-TT--T-AA---ATGAAATTTT-C--NG-AA-A-------AT-A--TGC--AC-AATGAA-TTTG-TTCATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
Reference ( family-516 ) : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTATTNCTTTNTGAA-TT--T-AA---ATGAAATTTT-C--TG-AA-A-------AT-A--TGC-TAN-AATGAA-TTTG-TTCATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
gi|17811 : GTACATTT-TAAAA-A-GTTGT-TA-CTTG---CCTATTTCTGTTTGAA-TT--T-CA---GTTAATTTTTTC--TG-AA-A-------AT-A--T---TACCAATGAA-TTTG-TTCATTA-----GATTGTAGATTAAAAATATGA---AA--TT-----C-ACA-GACTTG------T-ATTGATGAAATATCAATAAATC
gi|17812 : GTGAATTT-CAAAA-A-GGAGG-TA-CATC---TCTATTGCGTTATGAA-TT--T-AA---ATGATGTTGT-------AA-A-------AT-A--TGC--AC-AACGAA-TTTG-TTCATTA-----GATTGTAGTTT-AAGATTTGA---AA--TT-----T-ACA-AACTCG------T-GTTGACCAAATATCAATAAAca
gi|17813 : GTGCATTT-CAAAA-A-GTGAC-TA-CATGC--TTTATTTCTTGCTTAA-TT--T-TA---ATGACATTTT-C--AG-AA-A-------AT-G--TG--TAC-AATGAA-TTTG-TTCATTA-----GCTTGTAGATT-GAAGTATGA---CA--TT-----C-ACA-AACACA------T-GTTGACGAAATATCAATAAAacca
gi|17814 : GTGCGTTT-CAAAA-A-GTTGG-TA-CATG---CTTAATTCTGTCTGAA-TT--T-AA---ATG-GATTTT-A--TG-AA-A-------AT-A--TGC-T-T-CATGAA-TTTG-TTCATTA-----CATTGCAGATA-AAAATATAC---AA--TT-----T-AC--AACTCT------T-GTTGACGAAACATCAATAAATC
gi|17815 : GTGCCTTT-CAAGA-A-GTTGT-TA-CATG---ACTATTATTTTCTGAA-TT--T-AA---ATGAAATTTC-T--TG-AA-A-------AT-A--TGC-TAA-AATGAA-TCTG-TTCGTTG-----GAATGTAGGTT-AAAATAGGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATACCAATAAATCc
gi|17816 : GTACATTT-AAAAA-A---TGT-TAACATG---CTTATTCCTGTCTGAA-TT--T-AG---ATGAAATTAT-C--TG-AA-A-------AT-A--TGC-C-C-AATGAA-TTTG-TTCAATA-----GAGTGTAAATT-AAAATATCG---AA--TT-----A-GCA-AACTCG------T-GTTGACGAAATGTCAATATAT
gi|17817 : GTGCATTT-TTAGA-A-GCTGT-TA-CATGATATTTATTTCTGTATAAA-TT--T-AA---ATGAAATTTT-C--GG-AA-A-------AT-A--TGCGTAT---TGAA-TATG-TTCATTC-----GACTGTAGATT-AAAATATGA---CA--TA-----T-ACA-GACTCC------T-GTTGACGATATATCAATAAATCgca
gi|17818 : GTGCATTT-CAAAA-A-GTTGT-AA-TATG---CTTATTTCTGTCTGAA-TT--T-AA---ATGAAATTTT-C--TG-AA-A-------AA-A--TGC-CTA-AAT-AA-TTTG-TTCATTA-----TATTGTAGATT-AAACAAAGA---AA--TT-----T-ACA-AACT-----------TTCACGAAATATCAATAAATca
gi|17819 : GTGCATTT-CCAAA-A-GTTG----------------TTTCTGTCTGAA-TT--T-AA---ATGTAATTTT-C--TG-AA-A--------T-A--TGC-T-C-AATGAA-TTTG-TTTATTA-----GATTGTGGATA-CGAATATAA---AA--TT-----T-ACA-AACTTG------T-GTTAATGGAATATCAATAAAT
gi|17820 : GTGCATTTACAAAA-----TGG-TA-CATG---TTTATTGCTTGATTAA-TT--T-AA---AT-------T-C--CGTAA-A-------AT-A--TGC--AT-AATAAA-TTTA-TTCATTA-----GATCGTAGATT-AAAATATG----AA--TT-----T--------TTG------T-GTTGACGAAATATCAATAAATC
gi|17821 : GCGCATTT-CAAAA-A-GCTGT-CA-CATA---CATACTTCTGTATGAA-TT--A-AA---ATCAATTTTT-C--TA-AA-A-------AT-AA-TTC-TA---ATGAT-TTTG-TTCACTA-----GATTGTAGATT-AAAATATAA---AA--CT-----T-ACA-AATTCG------A-GTTGACGAAATATTAATAAAca
gi|17822 : GTGTATTT-CAATC-A-GTTGA-TA-CCTG---TTTATTGCTTTCTTAA-TT--G-AA---CT---ATTTT-C--GG-AT-A-------AC-A--TGC--AC-AATGGA-TTTG-TTCATTA-----GATTATAGATT-GAAATAGGA---TA--TT-----T-ACA-AACTCG------T-GTTG
gi|17823 : GTACATTT-AAAAA-A-AT--------ATG---TTTATTGCTTCATTAA-TT--T-AA---ACGAAATTTA-C--GA-AA-A-------AT-A--TAC-T-C-AACGA--TTTT-TTCATTA-----GATTGTAGAT--AAAATGTGA---AA--TT-----T-ACA-AACAGG------T-ACTGACGAAATATCACTTAATC
gi|17824 : GTGCATTA-CAAAA-A-GTTGG-AG-CTTG---TAAATTGCTTTATTAA-TA--A-AT---ATGAAACTTA-C--GG-AA-A-------AT-A--TGC--AG-AATG-A-TTTATTTTATTC-----AATAGTAGATT-AAAATAT-A---AA--TT-----A-ACA-AACTCA------T-TTTTGTGAAATATCAATAAATCc
gi|17825 : GTGCATTT-CAAAA-A-GTAGA-TA-CATG---TTTATTACTTTGTAAA-TT--T-AA---GTTTAACTTT-T--GG-AA-A-------GG-A--TGC--AC-TATGAA-TTTG-TTCATTA-----G
gi|17826 : TGCATTT-TAAAA-A-GTTGG-TA-CATG---TTTATTGCTTTATCAA-TT--T-AA---ACGAA-TTTT-C--AG-AA-A-------AC-A--TGA--AC-AAAGAA-TGTG-TTCATTA-----TATGTTAGATT-AAAATATGA---AA--AT-----T-ACA-AGCTCG------C-GTTCACGAAATATCAATAAATC
gi|17827 : TGCATTT-CAAAA-G-GTTGG-TA-CATT---TGTATTTCTTCATGAA-TT--T-AA---ATAAAAATTT-C--GA-AA-A-------AT-C--TGC-----AGTGAA-ACTG-TTca
gi|17828 : TGCATTT-CAGAA-A-GTTGT-GA-CATA--------------------------AA---ATAAAATTGT-T--TG-AA-A-------AT-A--TGC--AC-AATGAA-TTTA-TTCATTA-----GATTGGAGATG-AGAATATGA---AA--TT-----T-ACA-AACTGA------T-GTTGACGAAATATCATTTAATC
gi|17829 : TGCATTT-CAAAC-A-GTTGT-TA-CATG---TTTATTGCATTATTAT-TT--T-AAGCAATAAA----T-CA-GG-AA-A-------AT-A--TGC--AC-AATGAA-TTTG-TTCATTA-----ATTTGCAGATT-TAAATATGAAATAA--TT-----T-ACA-AACTCC------T-GTTGACAAAATATCAAAAGATCca
gi|17830 : TGCATTT-CAAAA-A--TTGG-TA-AATG---TTTATTGTCTTATAAA-TT--T-AA---GTGAAATTTT-T--GG-AA-A-------AT-A--TAC--AC-AATGAA-TTT--TTCGTTA-----GAATATTGATA-CGAATTTG----AA--TC-----T-ACA-AACTCG------T-GTTGTCGAAAAATTAGTAAATC
gi|17831 : TGTATTT-CAATA-A-ATTGGCTA-AATA---ATAAATTCTGTGTAAA-TT--T-AA---ATGAAATTTT-C--TA-AA-T-------AT-AAATGC-C-C-AATAAA-TGTG-TTTACTA-----GATTAAAGATA-AAGAAATGA---AA--TA-----A-TCA-TACTCG------T-GTTAATGAAATAGCAAGAAAT
gi|17832 : TGAATTT-CAAAA-A-GATGT-CA-CATA---ATTATTTTGGTCTAAATTT--T-TA---ACG-AATTTT-C--TT-AA-A-------AT-A--TGC------GTGTG-CCTT-TTTGTTA-----TATTGTATATT-AGGAGACG----AA--TT-----T----------G------T-GATGATAAACTATCAATGAATCtca
gi|17833 : TGCTTTT-CAAAA-T-GTAGG-AA-CAT----TTTATTTCTGTATGAA-TT--T-GG---GTGATTATTT-C--AG-AA-A-------AT-A--TGC--AA-AATGAA-ATTG-TTCTTTA-----AATCGCAGATT-ATGATATAA---AA--TT-----TGACA-AGTTCA------T-GTTAAAGAAATATCAATGAACC
gi|17834 : TGCATCT-AAAAA-ATGTTTG-TA-CATA---TTTCTCTCAATATGAAATT--C-AA---ACAATGTTTT-C--AG-AA-A-------AT-G--T-------AATCAA-T--G-C-----------GATTGGAGATT-AAAATATGG---AA--TA-----A-ACA-AACTCG------T-GTTGACG----ATCAAGACATC
gi|17835 : TGTATTT-CAAAA---TTTGG-TA-TGTG---TTTATTTCTGTATAAA-TT--T-TA---ATGAAAC------------------------A--TGG--AC-AATAAA-TTT--TTCATAC-----GATTATAGATT-ACAAGAAGA---AA--TT-----T-ACA-AACC------------------AATTTCAATAAATCca
gi|17836 : CATTT-CAAAA-A-GTTGG-TA-CAAG---CTTATTTATTTCTGAA-CA--T-GA---ATAAAATTTT-C--TC-AA-A-------AT-A--TTC-C-C-AATGAA-TTTG-TTCATTA-----GATTTTAGTTT-CAAATGTGA---AA--TT-----T-ACG-GACTCG------T-ATTGACGCAATATCAATAACTCta
gi|17837 : CATTT-AAAAA-C-ATTTT-TA-TAT------TATGTGTTTATA----T--T-AA---ACGATATTTT-C--AG-AT-T-------AA-A--TGC--AC-AGTGAT-TATG-TTCATAA-----GATTTGAGATT-AAAATATGA---AA--TT-----G-TCA-AACTTG------T-GTTGATGAAATGTCAAca
gi|17838 : TTT-TAAAA-A-GCTAT-TA-CACG---TTGGTTTCTGTCTGAA-TT--T-AA---ATGAAA-TTA-A--TG-AA-A-------AT-A--TGC-C-C-ATTGAA-TTTG-TTCATTA-----AACTTTAGACT---AACATTA---AA--TT-----T-TCA-AACTCG------TGGTTGGCGAAATATCAATAAAT
gi|17839 : TTT-CAAAA-T-GTTG--TA-CATG---TTGATTTCTGTAAAAA-TC----AA---ACGAACATTT-C--AG-AA-A-------AT-A--TGC-TA--AATAGT-TTTG-TTTATAA-----GATTGTAACTT-AAACTATGA---AACATTCCATAT-ATATAAGT-A------T-ATTGATGAAATATCAATGAACCtca
gi|17840 : -CAAAATA-GTTG--TA-CATG---TTTATTCCTTTAATAA-TT--T-AG---ATGAATATTT-C--AG-AT-A-------AT-A--TGC--AG-GATGAA-TTGT-TTCATTA-----GATTGCAGATT-AAACTATGA---AA--TT-----A-ACA-AACTCG------T-GTTGAc
gi|17841 : AAAA-A-GTTGT-TA-CATG---CTTATTC--------------------------------C--AG-AA-A-------AT-A--TGC-C-C-AATGCA-TTTG-TTTAGTA-----GATTGTAGATT-AAAATACAA---AA--TT-----T-ACA-AACTCG------T-GTTGACGTAATATCAATAAATC
gi|17842 : -A-ATTGA-TA-CATG---TTTGGTTTTTTTT--A-TTATT-AA---ATAAGAT--------G-AA-A-------AT-A--TGC-T-T-AATAAA-CTGT-TTCATTA-----GATTGTGAATT-AAATTATGA---AA---------T-ATA-AATTCGTGCAACT-GTTGATGAAATATCAATAAATCca
gi|17843 : A-CGTG---TTTATTGGTTTATTAA-TT--T-GA---AAAAAATC-------G-AACG-------AT-A--TGC-C-C-AGTGAG-TTTG-TTCATTA-----GACTGTAG-----------------A--TT-----T-AC--AACTTA------T-GTTGACGAAATATCAATAAATCca
gi|17844 : TCTGAA-TT--TCAA---AACAACTTTT-C--TG-AA-A-------TT-G--TGC--GT-AATGAA-ATAG-TTCATTAATTTAGATTGTAGATT-GAAATATGA---AA--TT-----G-ACA-AATTTG------T-GTTGACGAAATACCATTAAATCc
gi|17845 : ---ATGAAATTGA-C--GG-GA-A-------AT-G--CACATTT-AATACA-TTTG-ATCATTA-----AATTGTAGATT-AAAATATGA---AC--GT-----T-ACC-AACTCA------T-GTTGACAAAATATCAATta
gi|17846 : aatct-TT--T-AA---ATAAAATTTT-C--AG-AA-ATATATTTATTA--TGC--AC-AATGAA-TTTG-TTC---------GATTGTAGATT-AAAACATGA---AA--TT-----T-GTA-AACTCG------T-ATTGtattcca
gi|17847 : AAATTTT-TCTTG-AA----------T-A--TGT-CA--AATTAA-TTTG-TTTTTTA-----GATTAAATATT-AAT-TATGA---TT--TT-----T-ACA-AACCCT------TTGCTTACGTAAAATCAATAAATC
gi|17848 : tG-GA-A-------AT-A--TGA--AC-AATGAA-TTTG-GTCATTA-----GATGGGAAATT-AAAATATGA---AA--TT-----T-ATA-AAGTCG------T-GTTGGCGAAATATCAATAAATCca
gi|17849 : -AATGAAATTTG-ATCATTA-----CATTATAGATT-AAAATATGA---AG--TT-----T-ACA-AACTCA------C-GTTGACAAAATTTCAATAAATCc
gi|17850 : TGAA-TTTA-CTCAATA-----GATTGTATATA-ATGATATGA---AA--TA-----T-TCA-GACTCG------T-GTTGACAGAATATCACTAAATCca
gi|17851 : TG-TACTTTA-----AATTGTAAACG-AAAATAGGA---AA--TT-----T-ACA-AA-TCG------T-GTTGACAAAATATCAATAAATCca
gi|17852 : TGTAGGCT-AAAATATGA---AA--TT-----A-ACG-AACTCG------T-GTTGACGAAATATAAATAGATCca
gi|17853 : GATA-AAAATATGA---CA--TT-----T-ACA-AACTTG------T-GTTGATGAAATATTGATAAATCc
gi|17854 : T-AAAACATGA---AA--TT-----T-ACA-AACTCG------T-ATTGCCGAAATATCAATAAAca
gi|17855 : TGTGA---AA--TT-----G-ACA-AACTCG------T-GTTGACAAAATATCAATAAA
Alignments
lowQualScore : 1 1 1 66 1 333 11 1 2 1 2 2 1 222 1 11 1 33 1 1 3333333 2 11 1 55 2222 1 1 22222 1 111 11 22222 0 0 222222 1
lowQualScore : . . . .. . ... .. . . . . . . ... . .. . .. . . ....... . .. . .. .... . . ..... . ... .. ..... . . ...... .
lowQualScore : 3 2 2 33 2 333 77 2 7 4 6 3 1 000 8 55 1 66 1 1 4444444 1 44 1 22 2222 0 0 55555 0 666 33 33333 9 9 777777 9
consensus : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
Reference ( family-516 ) : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
gi|17811 : GTACATTT-TAAAA-A-GTTGT-TA-CTTG---CCTA--TTTCTGTTTGAA-TTT-C---AGTTAATTT--TTTC-TG-AA-A-------AT-A--TT-A-CCA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATTAAAAATATGA---AA--TT-----C-ACA-GACTTG------T-ATTGATGAAATATCAATAAATC
gi|17812 : GTGAATTT-CAAAA-A-GGAGG-TA-CATC---TCTA--TTGCGTTATGAA-TTT-A---AATGATGTT--GT------AA-A-------AT-A--TG-C-ACA----ACGAA-TTTGTTC-ATTA-----GATTGTAGTTT-AAGATTTGA---AA--TT-----T-ACA-AACTCG------T-GTTGACCAAATATCAATAAAca
gi|17813 : GTGCATTT-CAAAA-A-GTGAC-TA-CATGC--TTTA--TTTCTTGCTTAA-TTT-T---AATGACATT--TT-C-AG-AA-A-------AT-G--TG-T-ACA----ATGAA-TTTGTTC-ATTA-----GCTTGTAGATT-GAAGTATGA---CA--TT-----C-ACA-AACACA------T-GTTGACGAAATATCAATAAAacca
gi|17814 : GTGCGTTT-CAAAA-A-GTTGG-TA-CATG---CTTA--ATTCTGTCTGAA-TTT-A---AATGGA-TT--TT-A-TG-AA-A-------AT-A--TG-C-TTC----ATGAA-TTTGTTC-ATTA-----CATTGCAGATA-AAAATATAC---AA--TT-----T-AC--AACTCT------T-GTTGACGAAACATCAATAAATC
gi|17815 : GTGCCTTT-CAAGA-A-GTTGT-TA-CATG---ACTA--TTATTTTCTGAA-TTT-A---AATGAAATT--TC-T-TG-AA-A-------AT-A--TG-CTAAA----ATGAA-TCTGTTC-GTTG-----GAATGTAGGTT-AAAATAGGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATACCAATAAATCc
gi|17816 : GTACATTT-AAAAA-A---TGT-TAACATG---CTTA--TTCCTGTCTGAA-TTT-A---GATGAAATT--AT-C-TG-AA-A-------AT-A--TG-C-CCA----ATGAA-TTTGTTC-AATA-----GAGTGTAAATT-AAAATATCG---AA--TT-----A-GCA-AACTCG------T-GTTGACGAAATGTCAATATAT
gi|17817 : GTGCATTT-TTAGA-A-GCTGT-TA-CATGATATTTA--TTTCTGTATAAA-TTT-A---AATGAAATT--TT-C-GG-AA-A-------AT-A--TG-C-GTA----TTGAA-TATGTTC-ATTC-----GACTGTAGATT-AAAATATGA---CA--TA-----T-ACA-GACTCC------T-GTTGACGATATATCAATAAATCgca
gi|17818 : GTGCATTT-CAAAA-A-GTTGT-AA-TATG---CTTA--TTTCTGTCTGAA-TTT-A---AATGAAATT--TT-C-TG-AA-A-------AA-A--TG-C-CTA----AATAA-TTTGTTC-ATTA-----TATTGTAGATT-AAACAAAGA---AA--TT-----T-ACA-AACT-----------TTCACGAAATATCAATAAATca
gi|17819 : GTGCATTT-CCAAA-A-GTTG------------------TTTCTGTCTGAA-TTT-A---AATGTAATT--TT-C-TG-AA-A--------T-A--TG-C-TCA----ATGAA-TTTGTTT-ATTA-----GATTGTGGATA-CGAATATAA---AA--TT-----T-ACA-AACTTG------T-GTTAATGGAATATCAATAAAT
gi|17820 : GTGCATTTACAAAA-----TGG-TA-CATG---TTTA--TTGCTTGATTAA-TTT-A---AAT---------T-C-CGTAA-A-------AT-A--TG-C-ATA----ATAAA-TTTATTC-ATTA-----GATCGTAGATT-AAAATATG----AA--TT-----T--------TTG------T-GTTGACGAAATATCAATAAATC
gi|17821 : GCGCATTT-CAAAA-A-GCTGT-CA-CATA---CATA--CTTCTGTATGAA-TTA-A---AATCAATTT--TT-C-TA-AA-A-------ATAA--TT-C--TA----ATGAT-TTTGTTC-ACTA-----GATTGTAGATT-AAAATATAA---AA--CT-----T-ACA-AATTCG------A-GTTGACGAAATATTAATAAAca
gi|17822 : GTGTATTT-CAATC-A-GTTGA-TA-CCTG---TTTA--TTGCTTTCTTAA-TTG-A---ACT---ATT--TT-C-GG-AT-A-------AC-A--TG-C-ACA----ATGGA-TTTGTTC-ATTA-----GATTATAGATT-GAAATAGGA---TA--TT-----T-ACA-AACTCG------T-GTTG
gi|17823 : GTACATTT-AAAAA-A-AT--------ATG---TTTA--TTGCTTCATTAA-TTT-A---AACGAAATT--TA-C-GA-AA-A-------AT-A--TA-C-TCA----ACG-A-TTTTTTC-ATTA-----GATTGTAGA-T-AAAATGTGA---AA--TT-----T-ACA-AACAGG------T-ACTGACGAAATATCACTTAATC
gi|17824 : GTGCATTA-CAAAA-A-GTTGG-AG-CTTG---TAAA--TTGCTTTATTAA-TAA-A---TATGAAACT--TA-C-GG-AA-A-------AT-A--TG-C-AGA----ATGA--TTTATTTTATTC-----AATAGTAGATT-AAAATAT-A---AA--TT-----A-ACA-AACTCA------T-TTTTGTGAAATATCAATAAATCc
gi|17825 : GTGCATTT-CAAAA-A-GTAGA-TA-CATG---TTTA--TTACTTTGTAAA-TTT-A---AGTTTAACT--TT-T-GG-AA-A-------GG-A--TG-C-ACT----ATGAA-TTTGTTC-ATTA-----G
gi|17826 : TGCATTT-TAAAA-A-GTTGG-TA-CATG---TTTA--TTGCTTTATCAA-TTT-A---AACGAA-TT--TT-C-AG-AA-A-------AC-A--TG-A-ACA----AAGAA-TGTGTTC-ATTA-----TATGTTAGATT-AAAATATGA---AA--AT-----T-ACA-AGCTCG------C-GTTCACGAAATATCAATAAATC
gi|17827 : TGCATTT-CAAAA-G-GTTGG-TA-CATT---TGTA--TTTCTTCATGAA-TTT-A---AATAAAAAT--TT-C-GA-AA-A-------AT-C--TG----CA----GTGAA-ACTGTTca
gi|17828 : TGCATTT-CAGAA-A-GTTGT-GA-CATA--------------------------A---AATAAAATT--GT-T-TG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTATTC-ATTA-----GATTGGAGATG-AGAATATGA---AA--TT-----T-ACA-AACTGA------T-GTTGACGAAATATCATTTAATC
gi|17829 : TGCATTT-CAAAC-A-GTTGT-TA-CATG---TTTA--TTGCATTATTAT-TTT-AAGCAATAAA------T-CAGG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----ATTTGCAGATT-TAAATATGAAATAA--TT-----T-ACA-AACTCC------T-GTTGACAAAATATCAAAAGATCca
gi|17830 : TGCATTT-CAAAA-A--TTGG-TA-AATG---TTTA--TTGTCTTATAAA-TTT-A---AGTGAAATT--TT-T-GG-AA-A-------AT-A--TA-C-ACA----ATGAA-TTT-TTC-GTTA-----GAATATTGATA-CGAATTTG----AA--TC-----T-ACA-AACTCG------T-GTTGTCGAAAAATTAGTAAATC
gi|17831 : TGTATTT-CAATA-A-ATTGGCTA-AATA---ATAA--ATTCTGTGTAAA-TTT-A---AATGAAATT--TT-C-TA-AA-T-------AT-AAATG-C-CCA----ATAAA-TGTGTTT-ACTA-----GATTAAAGATA-AAGAAATGA---AA--TA-----A-TCA-TACTCG------T-GTTAATGAAATAGCAAGAAAT
gi|17832 : TGAATTT-CAAAA-A-GATGT-CA-CATA---ATTA--TTTTGGTCTAAATTTT-T---AACG-AATT--TT-C-TT-AA-A-------AT-A--TG-C--------GTGTG-CCTTTTT-GTTA-----TATTGTATATT-AGGAGACG----AA--TT-----T----------G------T-GATGATAAACTATCAATGAATCtca
gi|17833 : TGCTTTT-CAAAA-T-GTAGG-AA-CAT----TTTA--TTTCTGTATGAA-TTT-G---GGTGATTAT--TT-C-AG-AA-A-------AT-A--TG-C-AAA----ATGAA-ATTGTTC-TTTA-----AATCGCAGATT-ATGATATAA---AA--TT-----TGACA-AGTTCA------T-GTTAAAGAAATATCAATGAACC
gi|17834 : TGCATCT-AAAAA-ATGTTTG-TA-CATA---TTTC--TCTCAATATGAAATTC-A---AACAATGTT--TT-C-AG-AA-A-------AT-G--T------A----ATCAA-T--GC------------GATTGGAGATT-AAAATATGG---AA--TA-----A-ACA-AACTCG------T-GTTGACG----ATCAAGACATC
gi|17835 : TGTATTT-CAAAA---TTTGG-TA-TGTG---TTTA--TTTCTGTATAAA-TTT-T---AATG----------------A-A-------AC-A--TG-G-ACA----ATAAA-TTT-TTC-ATAC-----GATTATAGATT-ACAAGAAGA---AA--TT-----T-ACA-AACC------------------AATTTCAATAAATCca
gi|17836 : CATTT-CAAAA-A-GTTGG-TA-CAAG---CTTA--TTTATTTCTGAA-CAT-G---AATAAAATT--TT-C-TC-AA-A-------AT-A--TT-C-CCA----ATGAA-TTTGTTC-ATTA-----GATTTTAGTTT-CAAATGTGA---AA--TT-----T-ACG-GACTCG------T-ATTGACGCAATATCAATAACTCta
gi|17837 : CATTT-AAAAA-C-ATTTT-TA-TAT------TA--TGTGTTTATA----TT-A---AACGATATT--TT-C-AG-AT-T-------AA-A--TG-C-ACA----GTGAT-TATGTTC-ATAA-----GATTTGAGATT-AAAATATGA---AA--TT-----G-TCA-AACTTG------T-GTTGATGAAATGTCAAca
gi|17838 : TTT-TAAAA-A-GCTAT-TA-CACG---TTGG--TTTCTGTCTGAA-TTT-A---AATGAAATTAAT-----G-AA-A-------AT-A--TG-C-CCA----TTGAA-TTTGTTC-ATTA-----AACTTTAGACT---AACATTA---AA--TT-----T-TCA-AACTCG------TGGTTGGCGAAATATCAATAAAT
gi|17839 : TTT-CAAAA-T-GTTG--TA-CATG---TTGA--TTTCTGTAAAAA-TC--A---AACGAACAT--TT-C-AG-AA-A-------AT-A--TG-C-TAA----ATAGT-TTTGTTT-ATAA-----GATTGTAACTT-AAACTATGA---AACATTCCATAT-ATATAAGT-A------T-ATTGATGAAATATCAATGAACCtca
gi|17840 : -CAAAATA-GTTG--TA-CATG---TTTA--TTCCTTTAATAA-TTT-A---GATGAATAT--TT-C-AG-AT-A-------AT-A--TG-C-AGG----ATGAA-TTGTTTC-ATTA-----GATTGCAGATT-AAACTATGA---AA--TT-----A-ACA-AACTCG------T-GTTGAc
gi|17841 : AAAA-A-GTTGT-TA-CATG---CTTA--TTCC---------------------------------AG-AA-A-------AT-A--TG-C-CCA----ATGCA-TTTGTTT-AGTA-----GATTGTAGATT-AAAATACAA---AA--TT-----T-ACA-AACTCG------T-GTTGACGTAATATCAATAAATC
gi|17842 : -A-ATTGA-TA-CATG---TTTGGTTTTTTTTATTA---TT-A---AATAAGAT---------G-AA-A-------AT-A--TG-C-TTA----ATAAA-CTGTTTC-ATTA-----GATTGTGAATT-AAATTATGA---AA---------T-ATA-AATTCGTGCAACT-GTTGATGAAATATCAATAAATCca
gi|17843 : A-CGTG---TTTA--TTGGTTTATTAA-TTT-G---AAAAAAAT--------CG-AACG-------AT-A--TG-C-CCA----GTGAG-TTTGTTC-ATTA-----GACTGTAG-----------------A--TT-----T-AC--AACTTA------T-GTTGACGAAATATCAATAAATCca
gi|17844 : TGAA-TTTCA---AAACAACTT--TT-C-TG-AA-A-------TT-G--TG-C-GTA----ATGAA-ATAGTTC-ATTAATTTAGATTGTAGATT-GAAATATGA---AA--TT-----G-ACA-AATTTG------T-GTTGACGAAATACCATTAAATCc
gi|17845 : tcATGAAATT--GA-C-GG-GA-A-------AT-----G-C-ACATTTAATACA-TTTGATC-ATTA-----AATTGTAGATT-AAAATATGA---AC--GT-----T-ACC-AACTCA------T-GTTGACAAAATATCAATta
gi|17846 : aatct-TTT-A---AATAAAATT--TT-C-AG-AA-ATATATTTATTA--TG-C-ACA----ATGAA-TTTGTTC----------GATTGTAGATT-AAAACATGA---AA--TT-----T-GTA-AACTCG------T-ATTGtattcca
gi|17847 : AAATT--TT-T-CT-TG-A-------AT-A--TGTC-A-A----ATTAA-TTTGTTT-TTTA-----GATTAAATATT-AAT-TATGA---TT--TT-----T-ACA-AACCCT------TTGCTTACGTAAAATCAATAAATC
gi|17848 : tG-GA-A-------AT-A--TG-A-ACA----ATGAA-TTTGGTC-ATTA-----GATGGGAAATT-AAAATATGA---AA--TT-----T-ATA-AAGTCG------T-GTTGGCGAAATATCAATAAATCca
gi|17849 : A----ATGAAATTTGATC-ATTA-----CATTATAGATT-AAAATATGA---AG--TT-----T-ACA-AACTCA------C-GTTGACAAAATTTCAATAAATCc
gi|17850 : TGAA-TTTACTC-AATA-----GATTGTATATA-ATGATATGA---AA--TA-----T-TCA-GACTCG------T-GTTGACAGAATATCACTAAATCca
gi|17851 : TGTAC-TTTA-----AATTGTAAACG-AAAATAGGA---AA--TT-----T-ACA-AA-TCG------T-GTTGACAAAATATCAATAAATCca
gi|17852 : TGTAGGCT-AAAATATGA---AA--TT-----A-ACG-AACTCG------T-GTTGACGAAATATAAATAGATCca
gi|17853 : GATA-AAAATATGA---CA--TT-----T-ACA-AACTTG------T-GTTGATGAAATATTGATAAATCc
gi|17854 : T-AAAACATGA---AA--TT-----T-ACA-AACTCG------T-ATTGCCGAAATATCAATAAAca
gi|17855 : TGTGA---AA--TT-----G-ACA-AACTCG------T-GTTGACAAAATATCAATAAA
Alignments
lowQualScore : 1 1 1 66 1 333 11 1 2 1 2 2 1 222 1 11 1 33 1 1 3333333 2 11 1 55 2222 1 1 22222 1 111 11 22222 0 0 222222 1
lowQualScore : . . . .. . ... .. . . . . . . ... . .. . .. . . ....... . .. . .. .... . . ..... . ... .. ..... . . ...... .
lowQualScore : 3 2 2 33 2 333 77 2 7 4 6 3 1 000 8 55 1 66 1 1 4444444 1 44 1 22 2222 0 0 55555 0 666 33 33333 9 9 777777 9
consensus : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
Reference ( family-516 ) : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
gi|17811 : GTACATTT-TAAAA-A-GTTGT-TA-CTTG---CCTA--TTTCTGTTTGAA-TTT-C---AGTTAATTT--TTTC-TG-AA-A-------AT-A--TT-A-CCA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATTAAAAATATGA---AA--TT-----C-ACA-GACTTG------T-ATTGATGAAATATCAATAAATC
gi|17812 : GTGAATTT-CAAAA-A-GGAGG-TA-CATC---TCTA--TTGCGTTATGAA-TTT-A---AATGATGTT--GT------AA-A-------AT-A--TG-C-ACA----ACGAA-TTTGTTC-ATTA-----GATTGTAGTTT-AAGATTTGA---AA--TT-----T-ACA-AACTCG------T-GTTGACCAAATATCAATAAAca
gi|17813 : GTGCATTT-CAAAA-A-GTGAC-TA-CATGC--TTTA--TTTCTTGCTTAA-TTT-T---AATGACATT--TT-C-AG-AA-A-------AT-G--TG-T-ACA----ATGAA-TTTGTTC-ATTA-----GCTTGTAGATT-GAAGTATGA---CA--TT-----C-ACA-AACACA------T-GTTGACGAAATATCAATAAAacca
gi|17814 : GTGCGTTT-CAAAA-A-GTTGG-TA-CATG---CTTA--ATTCTGTCTGAA-TTT-A---AATGGA-TT--TT-A-TG-AA-A-------AT-A--TG-C-TTC----ATGAA-TTTGTTC-ATTA-----CATTGCAGATA-AAAATATAC---AA--TT-----T-AC--AACTCT------T-GTTGACGAAACATCAATAAATC
gi|17815 : GTGCCTTT-CAAGA-A-GTTGT-TA-CATG---ACTA--TTATTTTCTGAA-TTT-A---AATGAAATT--TC-T-TG-AA-A-------AT-A--TG-CTAAA----ATGAA-TCTGTTC-GTTG-----GAATGTAGGTT-AAAATAGGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATACCAATAAATCc
gi|17816 : GTACATTT-AAAAA-A---TGT-TAACATG---CTTA--TTCCTGTCTGAA-TTT-A---GATGAAATT--AT-C-TG-AA-A-------AT-A--TG-C-CCA----ATGAA-TTTGTTC-AATA-----GAGTGTAAATT-AAAATATCG---AA--TT-----A-GCA-AACTCG------T-GTTGACGAAATGTCAATATAT
gi|17817 : GTGCATTT-TTAGA-A-GCTGT-TA-CATGATATTTA--TTTCTGTATAAA-TTT-A---AATGAAATT--TT-C-GG-AA-A-------AT-A--TG-C-GTA----TTGAA-TATGTTC-ATTC-----GACTGTAGATT-AAAATATGA---CA--TA-----T-ACA-GACTCC------T-GTTGACGATATATCAATAAATCgca
gi|17818 : GTGCATTT-CAAAA-A-GTTGT-AA-TATG---CTTA--TTTCTGTCTGAA-TTT-A---AATGAAATT--TT-C-TG-AA-A-------AA-A--TG-C-CTA----AATAA-TTTGTTC-ATTA-----TATTGTAGATT-AAACAAAGA---AA--TT-----T-ACA-AACT-----------TTCACGAAATATCAATAAATca
gi|17819 : GTGCATTT-CCAAA-A-GTTG------------------TTTCTGTCTGAA-TTT-A---AATGTAATT--TT-C-TG-AA-A--------T-A--TG-C-TCA----ATGAA-TTTGTTT-ATTA-----GATTGTGGATA-CGAATATAA---AA--TT-----T-ACA-AACTTG------T-GTTAATGGAATATCAATAAAT
gi|17820 : GTGCATTTACAAAA-----TGG-TA-CATG---TTTA--TTGCTTGATTAA-TTT-A---AAT---------T-C-CGTAA-A-------AT-A--TG-C-ATA----ATAAA-TTTATTC-ATTA-----GATCGTAGATT-AAAATATG----AA--TT-----T--------TTG------T-GTTGACGAAATATCAATAAATC
gi|17821 : GCGCATTT-CAAAA-A-GCTGT-CA-CATA---CATA--CTTCTGTATGAA-TTA-A---AATCAATTT--TT-C-TA-AA-A-------ATAA--TT-C--TA----ATGAT-TTTGTTC-ACTA-----GATTGTAGATT-AAAATATAA---AA--CT-----T-ACA-AATTCG------A-GTTGACGAAATATTAATAAAca
gi|17822 : GTGTATTT-CAATC-A-GTTGA-TA-CCTG---TTTA--TTGCTTTCTTAA-TTG-A---ACT---ATT--TT-C-GG-AT-A-------AC-A--TG-C-ACA----ATGGA-TTTGTTC-ATTA-----GATTATAGATT-GAAATAGGA---TA--TT-----T-ACA-AACTCG------T-GTTG
gi|17823 : GTACATTT-AAAAA-A-AT--------ATG---TTTA--TTGCTTCATTAA-TTT-A---AACGAAATT--TA-C-GA-AA-A-------AT-A--TA-C-TCA----ACG-A-TTTTTTC-ATTA-----GATTGTAGA-T-AAAATGTGA---AA--TT-----T-ACA-AACAGG------T-ACTGACGAAATATCACTTAATC
gi|17824 : GTGCATTA-CAAAA-A-GTTGG-AG-CTTG---TAAA--TTGCTTTATTAA-TAA-A---TATGAAACT--TA-C-GG-AA-A-------AT-A--TG-C-AGA----ATGA--TTTATTTTATTC-----AATAGTAGATT-AAAATAT-A---AA--TT-----A-ACA-AACTCA------T-TTTTGTGAAATATCAATAAATCc
gi|17825 : GTGCATTT-CAAAA-A-GTAGA-TA-CATG---TTTA--TTACTTTGTAAA-TTT-A---AGTTTAACT--TT-T-GG-AA-A-------GG-A--TG-C-ACT----ATGAA-TTTGTTC-ATTA-----G
gi|17826 : TGCATTT-TAAAA-A-GTTGG-TA-CATG---TTTA--TTGCTTTATCAA-TTT-A---AACGAA-TT--TT-C-AG-AA-A-------AC-A--TG-A-ACA----AAGAA-TGTGTTC-ATTA-----TATGTTAGATT-AAAATATGA---AA--AT-----T-ACA-AGCTCG------C-GTTCACGAAATATCAATAAATC
gi|17827 : TGCATTT-CAAAA-G-GTTGG-TA-CATT---TGTA--TTTCTTCATGAA-TTT-A---AATAAAAAT--TT-C-GA-AA-A-------AT-C--TG----CA----GTGAA-ACTGTTca
gi|17828 : TGCATTT-CAGAA-A-GTTGT-GA-CATA--------------------------A---AATAAAATT--GT-T-TG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTATTC-ATTA-----GATTGGAGATG-AGAATATGA---AA--TT-----T-ACA-AACTGA------T-GTTGACGAAATATCATTTAATC
gi|17829 : TGCATTT-CAAAC-A-GTTGT-TA-CATG---TTTA--TTGCATTATTAT-TTT-AAGCAATAAA------T-CAGG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----ATTTGCAGATT-TAAATATGAAATAA--TT-----T-ACA-AACTCC------T-GTTGACAAAATATCAAAAGATCca
gi|17830 : TGCATTT-CAAAA-A--TTGG-TA-AATG---TTTA--TTGTCTTATAAA-TTT-A---AGTGAAATT--TT-T-GG-AA-A-------AT-A--TA-C-ACA----ATGAA-TTT-TTC-GTTA-----GAATATTGATA-CGAATTTG----AA--TC-----T-ACA-AACTCG------T-GTTGTCGAAAAATTAGTAAATC
gi|17831 : TGTATTT-CAATA-A-ATTGGCTA-AATA---ATAA--ATTCTGTGTAAA-TTT-A---AATGAAATT--TT-C-TA-AA-T-------AT-AAATG-C-CCA----ATAAA-TGTGTTT-ACTA-----GATTAAAGATA-AAGAAATGA---AA--TA-----A-TCA-TACTCG------T-GTTAATGAAATAGCAAGAAAT
gi|17832 : TGAATTT-CAAAA-A-GATGT-CA-CATA---ATTA--TTTTGGTCTAAATTTT-T---AACG-AATT--TT-C-TT-AA-A-------AT-A--TG-C--------GTGTG-CCTTTTT-GTTA-----TATTGTATATT-AGGAGACG----AA--TT-----T----------G------T-GATGATAAACTATCAATGAATCtca
gi|17833 : TGCTTTT-CAAAA-T-GTAGG-AA-CAT----TTTA--TTTCTGTATGAA-TTT-G---GGTGATTAT--TT-C-AG-AA-A-------AT-A--TG-C-AAA----ATGAA-ATTGTTC-TTTA-----AATCGCAGATT-ATGATATAA---AA--TT-----TGACA-AGTTCA------T-GTTAAAGAAATATCAATGAACC
gi|17834 : TGCATCT-AAAAA-ATGTTTG-TA-CATA---TTTC--TCTCAATATGAAATTC-A---AACAATGTT--TT-C-AG-AA-A-------AT-G--T------A----ATCAA-T--GC------------GATTGGAGATT-AAAATATGG---AA--TA-----A-ACA-AACTCG------T-GTTGACG----ATCAAGACATC
gi|17835 : TGTATTT-CAAAA---TTTGG-TA-TGTG---TTTA--TTTCTGTATAAA-TTT-T---AATG----------------A-A-------AC-A--TG-G-ACA----ATAAA-TTT-TTC-ATAC-----GATTATAGATT-ACAAGAAGA---AA--TT-----T-ACA-AACC------------------AATTTCAATAAATCca
gi|17836 : CATTT-CAAAA-A-GTTGG-TA-CAAG---CTTA--TTTATTTCTGAA-CAT-G---AATAAAATT--TT-C-TC-AA-A-------AT-A--TT-C-CCA----ATGAA-TTTGTTC-ATTA-----GATTTTAGTTT-CAAATGTGA---AA--TT-----T-ACG-GACTCG------T-ATTGACGCAATATCAATAACTCta
gi|17837 : CATTT-AAAAA-C-ATTTT-TA-TAT------TA--TGTGTTTATA----TT-A---AACGATATT--TT-C-AG-AT-T-------AA-A--TG-C-ACA----GTGAT-TATGTTC-ATAA-----GATTTGAGATT-AAAATATGA---AA--TT-----G-TCA-AACTTG------T-GTTGATGAAATGTCAAca
gi|17838 : TTT-TAAAA-A-GCTAT-TA-CACG---TTGG--TTTCTGTCTGAA-TTT-A---AATGAAATTAAT-----G-AA-A-------AT-A--TG-C-CCA----TTGAA-TTTGTTC-ATTA-----AACTTTAGACT---AACATTA---AA--TT-----T-TCA-AACTCG------TGGTTGGCGAAATATCAATAAAT
gi|17839 : TTT-CAAAA-T-GTTG--TA-CATG---TTGA--TTTCTGTAAAAA-TC--A---AACGAACAT--TT-C-AG-AA-A-------AT-A--TG-C-TAA----ATAGT-TTTGTTT-ATAA-----GATTGTAACTT-AAACTATGA---AACATTCCATAT-ATATAAGT-A------T-ATTGATGAAATATCAATGAACCtca
gi|17840 : -CAAAATA-GTTG--TA-CATG---TTTA--TTCCTTTAATAA-TTT-A---GATGAATAT--TT-C-AG-AT-A-------AT-A--TG-C-AGG----ATGAA-TTGTTTC-ATTA-----GATTGCAGATT-AAACTATGA---AA--TT-----A-ACA-AACTCG------T-GTTGAc
gi|17841 : AAAA-A-GTTGT-TA-CATG---CTTA--TTCC---------------------------------AG-AA-A-------AT-A--TG-C-CCA----ATGCA-TTTGTTT-AGTA-----GATTGTAGATT-AAAATACAA---AA--TT-----T-ACA-AACTCG------T-GTTGACGTAATATCAATAAATC
gi|17842 : -A-ATTGA-TA-CATG---TTTGGTTTTTTTTATTA---TT-A---AATAAGAT---------G-AA-A-------AT-A--TG-C-TTA----ATAAA-CTGTTTC-ATTA-----GATTGTGAATT-AAATTATGA---AA---------T-ATA-AATTCGTGCAACT-GTTGATGAAATATCAATAAATCca
gi|17843 : A-CGTG---TTTA--TTGGTTTATTAA-TTT-G---AAAAAAAT--------CG-AACG-------AT-A--TG-C-CCA----GTGAG-TTTGTTC-ATTA-----GACTGTAG-----------------A--TT-----T-AC--AACTTA------T-GTTGACGAAATATCAATAAATCca
gi|17844 : TGAA-TTTCA---AAACAACTT--TT-C-TG-AA-A-------TT-G--TG-C-GTA----ATGAA-ATAGTTC-ATTAATTTAGATTGTAGATT-GAAATATGA---AA--TT-----G-ACA-AATTTG------T-GTTGACGAAATACCATTAAATCc
gi|17845 : tcATGAAATT--GA-C-GG-GA-A-------AT-----G-C-ACATTTAATACA-TTTGATC-ATTA-----AATTGTAGATT-AAAATATGA---AC--GT-----T-ACC-AACTCA------T-GTTGACAAAATATCAATta
gi|17846 : aatct-TTT-A---AATAAAATT--TT-C-AG-AA-ATATATTTATTA--TG-C-ACA----ATGAA-TTTGTTC----------GATTGTAGATT-AAAACATGA---AA--TT-----T-GTA-AACTCG------T-ATTGtattcca
gi|17847 : AAATT--TT-T-CT-TG-A-------AT-A--TGTC-A-A----ATTAA-TTTGTTT-TTTA-----GATTAAATATT-AAT-TATGA---TT--TT-----T-ACA-AACCCT------TTGCTTACGTAAAATCAATAAATC
gi|17848 : tG-GA-A-------AT-A--TG-A-ACA----ATGAA-TTTGGTC-ATTA-----GATGGGAAATT-AAAATATGA---AA--TT-----T-ATA-AAGTCG------T-GTTGGCGAAATATCAATAAATCca
gi|17849 : A----ATGAAATTTGATC-ATTA-----CATTATAGATT-AAAATATGA---AG--TT-----T-ACA-AACTCA------C-GTTGACAAAATTTCAATAAATCc
gi|17850 : TGAA-TTTACTC-AATA-----GATTGTATATA-ATGATATGA---AA--TA-----T-TCA-GACTCG------T-GTTGACAGAATATCACTAAATCca
gi|17851 : TGTAC-TTTA-----AATTGTAAACG-AAAATAGGA---AA--TT-----T-ACA-AA-TCG------T-GTTGACAAAATATCAATAAATCca
gi|17852 : TGTAGGCT-AAAATATGA---AA--TT-----A-ACG-AACTCG------T-GTTGACGAAATATAAATAGATCca
gi|17853 : GATA-AAAATATGA---CA--TT-----T-ACA-AACTTG------T-GTTGATGAAATATTGATAAATCc
gi|17854 : T-AAAACATGA---AA--TT-----T-ACA-AACTCG------T-ATTGCCGAAATATCAATAAAca
gi|17855 : TGTGA---AA--TT-----G-ACA-AACTCG------T-GTTGACAAAATATCAATAAA
blockSeqs : A T T GC A ATA GT G T A G T C AGC G AA . AG T C TATATTT A AA T TA TTTA A T ATTTA AAT CA CCATA TGCAAC G
blockSeqs : . . . G . C . T T C T A . . A . . A . . . T . . A . . . . . . . . T
blockSeqs : . . . C . . . T G C G . . . A . . T . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . A T C G . . . A . . T . . . . . . T . . . . . . . . .
blockSeqs : . . . T . . . C G C G . . . A . . T . . . . . . C . . . . . . . . .
blockSeqs : . . . T . . . T G A A . . . A . . G . . . . . . G . . . . . . . . .
blockSeqs : . . . T . . . T G C G . . . A . . T . . . . . . C . . . . . . . . .
blockSeqs : . . . T . . . T G C G . . . T . . T . . . . . . T . . . . . . . . .
blockSeqs : . . . G . . . G T A T . . . A . . C . . . . . . A . . . . . . . . .
blockSeqs : . . . T . . . T G A G . . . A . . T . . . . . . A . . . . . . . . .
blockSeqs : . . . A . . . G T C T . . . A . . G . . . . . . T . . . . . . . . .
blockSeqs : . . . G . . . G T A T . . . A . . G . . . . . . A . . . . . . . . .
blockSeqs : . . . A . . . G T A T . . . A . . G . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . A T G A . . . A . . G . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . G T A C . . . A . . A . . . . . . A . . . . . . . . .
blockSeqs : . . . T . . . T T A G . . . A . . G . . . . . . A . . . . . . . . .
blockSeqs : . . . T . . . G T A T . . . A . . T . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . G T A A . . . T . . G . . . . . . C . . . . . . . . .
blockSeqs : . . . T . . . T G G A . . . G . . T . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . T G C A . . . A . . T . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . T G A G . . . A . . A . . . . . . C . . . . . . . . .
blockSeqs : . . . G . . . T A A G . . . A . . A . . . . . . A . . . . . . . . .
blockSeqs : . . . G . . . T G A A . . . C . . T . . . . . . C . . . . . . . . .
blockSeqs : . . . T . . . T T C G . . . T . . A . . . . . . T . . . . . . . . .
blockSeqs : . . . T . . . T T A A . . . A . . A . . . . . . A . . . . . . . . .
blockSeqs : . . . T . . . T G C G . . . A . . A . . . . . . C . . . . . . . . .
blockSeqs : . . . A . . . T G A A . . . C . . A . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C T A T . . . A . . C . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . C T A T . . . A . . T . . . . . . G . . . . . . . . .
blockSeqs : . . . . . . T T A T . . . A . . G . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . G . . G . . . . . . A . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . C . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
finalCons : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
Alignments
lowQualScore : 1 1 1 66 1 333 11 1 2 1 2 2 1 222 1 11 1 33 1 1 3333333 2 11 1 55 2222 1 1 22222 1 111 11 22222 0 0 222222 1
lowQualScore : . . . .. . ... .. . . . . . . ... . .. . .. . . ....... . .. . .. .... . . ..... . ... .. ..... . . ...... .
lowQualScore : 3 2 2 33 2 333 77 2 7 4 6 3 1 000 8 55 1 66 1 1 4444444 1 44 1 22 2222 0 0 55555 0 666 33 33333 9 9 777777 9
consensus : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
Reference ( family-516 ) : GTGCATTT-CAAAA-A-GTTGN-TA-CATG---TTTA--TTTCTTTATGAA-TTT-A---AATGAAATT--TT-C-NG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATT-AAAATATGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATATCAATAAATC
gi|17811 : GTACATTT-TAAAA-A-GTTGT-TA-CTTG---CCTA--TTTCTGTTTGAA-TTT-C---AGTTAATTT--TTTC-TG-AA-A-------AT-A--TT-A-CCA----ATGAA-TTTGTTC-ATTA-----GATTGTAGATTAAAAATATGA---AA--TT-----C-ACA-GACTTG------T-ATTGATGAAATATCAATAAATC
gi|17812 : GTGAATTT-CAAAA-A-GGAGG-TA-CATC---TCTA--TTGCGTTATGAA-TTT-A---AATGATGTT--GT------AA-A-------AT-A--TG-C-ACA----ACGAA-TTTGTTC-ATTA-----GATTGTAGTTT-AAGATTTGA---AA--TT-----T-ACA-AACTCG------T-GTTGACCAAATATCAATAAAca
gi|17813 : GTGCATTT-CAAAA-A-GTGAC-TA-CATGC--TTTA--TTTCTTGCTTAA-TTT-T---AATGACATT--TT-C-AG-AA-A-------AT-G--TG-T-ACA----ATGAA-TTTGTTC-ATTA-----GCTTGTAGATT-GAAGTATGA---CA--TT-----C-ACA-AACACA------T-GTTGACGAAATATCAATAAAacca
gi|17814 : GTGCGTTT-CAAAA-A-GTTGG-TA-CATG---CTTA--ATTCTGTCTGAA-TTT-A---AATGGA-TT--TT-A-TG-AA-A-------AT-A--TG-C-TTC----ATGAA-TTTGTTC-ATTA-----CATTGCAGATA-AAAATATAC---AA--TT-----T-AC--AACTCT------T-GTTGACGAAACATCAATAAATC
gi|17815 : GTGCCTTT-CAAGA-A-GTTGT-TA-CATG---ACTA--TTATTTTCTGAA-TTT-A---AATGAAATT--TC-T-TG-AA-A-------AT-A--TG-CTAAA----ATGAA-TCTGTTC-GTTG-----GAATGTAGGTT-AAAATAGGA---AA--TT-----T-ACA-AACTCG------T-GTTGACGAAATACCAATAAATCc
gi|17816 : GTACATTT-AAAAA-A---TGT-TAACATG---CTTA--TTCCTGTCTGAA-TTT-A---GATGAAATT--AT-C-TG-AA-A-------AT-A--TG-C-CCA----ATGAA-TTTGTTC-AATA-----GAGTGTAAATT-AAAATATCG---AA--TT-----A-GCA-AACTCG------T-GTTGACGAAATGTCAATATAT
gi|17817 : GTGCATTT-TTAGA-A-GCTGT-TA-CATGATATTTA--TTTCTGTATAAA-TTT-A---AATGAAATT--TT-C-GG-AA-A-------AT-A--TG-C-GTA----TTGAA-TATGTTC-ATTC-----GACTGTAGATT-AAAATATGA---CA--TA-----T-ACA-GACTCC------T-GTTGACGATATATCAATAAATCgca
gi|17818 : GTGCATTT-CAAAA-A-GTTGT-AA-TATG---CTTA--TTTCTGTCTGAA-TTT-A---AATGAAATT--TT-C-TG-AA-A-------AA-A--TG-C-CTA----AATAA-TTTGTTC-ATTA-----TATTGTAGATT-AAACAAAGA---AA--TT-----T-ACA-AACT-----------TTCACGAAATATCAATAAATca
gi|17819 : GTGCATTT-CCAAA-A-GTTG------------------TTTCTGTCTGAA-TTT-A---AATGTAATT--TT-C-TG-AA-A--------T-A--TG-C-TCA----ATGAA-TTTGTTT-ATTA-----GATTGTGGATA-CGAATATAA---AA--TT-----T-ACA-AACTTG------T-GTTAATGGAATATCAATAAAT
gi|17820 : GTGCATTTACAAAA-----TGG-TA-CATG---TTTA--TTGCTTGATTAA-TTT-A---AAT---------T-C-CGTAA-A-------AT-A--TG-C-ATA----ATAAA-TTTATTC-ATTA-----GATCGTAGATT-AAAATATG----AA--TT-----T--------TTG------T-GTTGACGAAATATCAATAAATC
gi|17821 : GCGCATTT-CAAAA-A-GCTGT-CA-CATA---CATA--CTTCTGTATGAA-TTA-A---AATCAATTT--TT-C-TA-AA-A-------ATAA--TT-C--TA----ATGAT-TTTGTTC-ACTA-----GATTGTAGATT-AAAATATAA---AA--CT-----T-ACA-AATTCG------A-GTTGACGAAATATTAATAAAca
gi|17822 : GTGTATTT-CAATC-A-GTTGA-TA-CCTG---TTTA--TTGCTTTCTTAA-TTG-A---ACT---ATT--TT-C-GG-AT-A-------AC-A--TG-C-ACA----ATGGA-TTTGTTC-ATTA-----GATTATAGATT-GAAATAGGA---TA--TT-----T-ACA-AACTCG------T-GTTG
gi|17823 : GTACATTT-AAAAA-A-AT--------ATG---TTTA--TTGCTTCATTAA-TTT-A---AACGAAATT--TA-C-GA-AA-A-------AT-A--TA-C-TCA----ACG-A-TTTTTTC-ATTA-----GATTGTAGA-T-AAAATGTGA---AA--TT-----T-ACA-AACAGG------T-ACTGACGAAATATCACTTAATC
gi|17824 : GTGCATTA-CAAAA-A-GTTGG-AG-CTTG---TAAA--TTGCTTTATTAA-TAA-A---TATGAAACT--TA-C-GG-AA-A-------AT-A--TG-C-AGA----ATGA--TTTATTTTATTC-----AATAGTAGATT-AAAATAT-A---AA--TT-----A-ACA-AACTCA------T-TTTTGTGAAATATCAATAAATCc
gi|17825 : GTGCATTT-CAAAA-A-GTAGA-TA-CATG---TTTA--TTACTTTGTAAA-TTT-A---AGTTTAACT--TT-T-GG-AA-A-------GG-A--TG-C-ACT----ATGAA-TTTGTTC-ATTA-----G
gi|17826 : TGCATTT-TAAAA-A-GTTGG-TA-CATG---TTTA--TTGCTTTATCAA-TTT-A---AACGAA-TT--TT-C-AG-AA-A-------AC-A--TG-A-ACA----AAGAA-TGTGTTC-ATTA-----TATGTTAGATT-AAAATATGA---AA--AT-----T-ACA-AGCTCG------C-GTTCACGAAATATCAATAAATC
gi|17827 : TGCATTT-CAAAA-G-GTTGG-TA-CATT---TGTA--TTTCTTCATGAA-TTT-A---AATAAAAAT--TT-C-GA-AA-A-------AT-C--TG----CA----GTGAA-ACTGTTca
gi|17828 : TGCATTT-CAGAA-A-GTTGT-GA-CATA--------------------------A---AATAAAATT--GT-T-TG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTATTC-ATTA-----GATTGGAGATG-AGAATATGA---AA--TT-----T-ACA-AACTGA------T-GTTGACGAAATATCATTTAATC
gi|17829 : TGCATTT-CAAAC-A-GTTGT-TA-CATG---TTTA--TTGCATTATTAT-TTT-AAGCAATAAA------T-CAGG-AA-A-------AT-A--TG-C-ACA----ATGAA-TTTGTTC-ATTA-----ATTTGCAGATT-TAAATATGAAATAA--TT-----T-ACA-AACTCC------T-GTTGACAAAATATCAAAAGATCca
gi|17830 : TGCATTT-CAAAA-A--TTGG-TA-AATG---TTTA--TTGTCTTATAAA-TTT-A---AGTGAAATT--TT-T-GG-AA-A-------AT-A--TA-C-ACA----ATGAA-TTT-TTC-GTTA-----GAATATTGATA-CGAATTTG----AA--TC-----T-ACA-AACTCG------T-GTTGTCGAAAAATTAGTAAATC
gi|17831 : TGTATTT-CAATA-A-ATTGGCTA-AATA---ATAA--ATTCTGTGTAAA-TTT-A---AATGAAATT--TT-C-TA-AA-T-------AT-AAATG-C-CCA----ATAAA-TGTGTTT-ACTA-----GATTAAAGATA-AAGAAATGA---AA--TA-----A-TCA-TACTCG------T-GTTAATGAAATAGCAAGAAAT
gi|17832 : TGAATTT-CAAAA-A-GATGT-CA-CATA---ATTA--TTTTGGTCTAAATTTT-T---AACG-AATT--TT-C-TT-AA-A-------AT-A--TG-C--------GTGTG-CCTTTTT-GTTA-----TATTGTATATT-AGGAGACG----AA--TT-----T----------G------T-GATGATAAACTATCAATGAATCtca
gi|17833 : TGCTTTT-CAAAA-T-GTAGG-AA-CAT----TTTA--TTTCTGTATGAA-TTT-G---GGTGATTAT--TT-C-AG-AA-A-------AT-A--TG-C-AAA----ATGAA-ATTGTTC-TTTA-----AATCGCAGATT-ATGATATAA---AA--TT-----TGACA-AGTTCA------T-GTTAAAGAAATATCAATGAACC
gi|17834 : TGCATCT-AAAAA-ATGTTTG-TA-CATA---TTTC--TCTCAATATGAAATTC-A---AACAATGTT--TT-C-AG-AA-A-------AT-G--T------A----ATCAA-T--GC------------GATTGGAGATT-AAAATATGG---AA--TA-----A-ACA-AACTCG------T-GTTGACG----ATCAAGACATC
gi|17835 : TGTATTT-CAAAA---TTTGG-TA-TGTG---TTTA--TTTCTGTATAAA-TTT-T---AATG----------------A-A-------AC-A--TG-G-ACA----ATAAA-TTT-TTC-ATAC-----GATTATAGATT-ACAAGAAGA---AA--TT-----T-ACA-AACC------------------AATTTCAATAAATCca
gi|17836 : CATTT-CAAAA-A-GTTGG-TA-CAAG---CTTA--TTTATTTCTGAA-CAT-G---AATAAAATT--TT-C-TC-AA-A-------AT-A--TT-C-CCA----ATGAA-TTTGTTC-ATTA-----GATTTTAGTTT-CAAATGTGA---AA--TT-----T-ACG-GACTCG------T-ATTGACGCAATATCAATAACTCta
gi|17837 : CATTT-AAAAA-C-ATTTT-TA-TAT------TA--TGTGTTTATA----TT-A---AACGATATT--TT-C-AG-AT-T-------AA-A--TG-C-ACA----GTGAT-TATGTTC-ATAA-----GATTTGAGATT-AAAATATGA---AA--TT-----G-TCA-AACTTG------T-GTTGATGAAATGTCAAca
gi|17838 : TTT-TAAAA-A-GCTAT-TA-CACG---TTGG--TTTCTGTCTGAA-TTT-A---AATGAAATTAAT-----G-AA-A-------AT-A--TG-C-CCA----TTGAA-TTTGTTC-ATTA-----AACTTTAGACT---AACATTA---AA--TT-----T-TCA-AACTCG------TGGTTGGCGAAATATCAATAAAT
gi|17839 : TTT-CAAAA-T-GTTG--TA-CATG---TTGA--TTTCTGTAAAAA-TC--A---AACGAACAT--TT-C-AG-AA-A-------AT-A--TG-C-TAA----ATAGT-TTTGTTT-ATAA-----GATTGTAACTT-AAACTATGA---AACATTCCATAT-ATATAAGT-A------T-ATTGATGAAATATCAATGAACCtca
gi|17840 : -CAAAATA-GTTG--TA-CATG---TTTA--TTCCTTTAATAA-TTT-A---GATGAATAT--TT-C-AG-AT-A-------AT-A--TG-C-AGG----ATGAA-TTGTTTC-ATTA-----GATTGCAGATT-AAACTATGA---AA--TT-----A-ACA-AACTCG------T-GTTGAc
gi|17841 : AAAA-A-GTTGT-TA-CATG---CTTA--TTCC---------------------------------AG-AA-A-------AT-A--TG-C-CCA----ATGCA-TTTGTTT-AGTA-----GATTGTAGATT-AAAATACAA---AA--TT-----T-ACA-AACTCG------T-GTTGACGTAATATCAATAAATC
gi|17842 : -A-ATTGA-TA-CATG---TTTGGTTTTTTTTATTA---TT-A---AATAAGAT---------G-AA-A-------AT-A--TG-C-TTA----ATAAA-CTGTTTC-ATTA-----GATTGTGAATT-AAATTATGA---AA---------T-ATA-AATTCGTGCAACT-GTTGATGAAATATCAATAAATCca
gi|17843 : A-CGTG---TTTA--TTGGTTTATTAA-TTT-G---AAAAAAAT--------CG-AACG-------AT-A--TG-C-CCA----GTGAG-TTTGTTC-ATTA-----GACTGTAG-----------------A--TT-----T-AC--AACTTA------T-GTTGACGAAATATCAATAAATCca
gi|17844 : TGAA-TTTCA---AAACAACTT--TT-C-TG-AA-A-------TT-G--TG-C-GTA----ATGAA-ATAGTTC-ATTAATTTAGATTGTAGATT-GAAATATGA---AA--TT-----G-ACA-AATTTG------T-GTTGACGAAATACCATTAAATCc
gi|17845 : tcATGAAATT--GA-C-GG-GA-A-------AT-----G-C-ACATTTAATACA-TTTGATC-ATTA-----AATTGTAGATT-AAAATATGA---AC--GT-----T-ACC-AACTCA------T-GTTGACAAAATATCAATta
gi|17846 : aatct-TTT-A---AATAAAATT--TT-C-AG-AA-ATATATTTATTA--TG-C-ACA----ATGAA-TTTGTTC----------GATTGTAGATT-AAAACATGA---AA--TT-----T-GTA-AACTCG------T-ATTGtattcca
gi|17847 : AAATT--TT-T-CT-TG-A-------AT-A--TGTC-A-A----ATTAA-TTTGTTT-TTTA-----GATTAAATATT-AAT-TATGA---TT--TT-----T-ACA-AACCCT------TTGCTTACGTAAAATCAATAAATC
gi|17848 : tG-GA-A-------AT-A--TG-A-ACA----ATGAA-TTTGGTC-ATTA-----GATGGGAAATT-AAAATATGA---AA--TT-----T-ATA-AAGTCG------T-GTTGGCGAAATATCAATAAATCca
gi|17849 : A----ATGAAATTTGATC-ATTA-----CATTATAGATT-AAAATATGA---AG--TT-----T-ACA-AACTCA------C-GTTGACAAAATTTCAATAAATCc
gi|17850 : TGAA-TTTACTC-AATA-----GATTGTATATA-ATGATATGA---AA--TA-----T-TCA-GACTCG------T-GTTGACAGAATATCACTAAATCca
gi|17851 : TGTAC-TTTA-----AATTGTAAACG-AAAATAGGA---AA--TT-----T-ACA-AA-TCG------T-GTTGACAAAATATCAATAAATCca
gi|17852 : TGTAGGCT-AAAATATGA---AA--TT-----A-ACG-AACTCG------T-GTTGACGAAATATAAATAGATCca
gi|17853 : GATA-AAAATATGA---CA--TT-----T-ACA-AACTTG------T-GTTGATGAAATATTGATAAATCc
gi|17854 : T-AAAACATGA---AA--TT-----T-ACA-AACTCG------T-ATTGCCGAAATATCAATAAAca
gi|17855 : TGTGA---AA--TT-----G-ACA-AACTCG------T-GTTGACAAAATATCAATAAA