lowQualScore : 111
lowQualScore : 2 0 3333333 55 5 111 111 777 11 11 11 0 4 2222222 7
lowQualScore : . . ....... .. . ... ... ... .. .. .. . . ....... .
lowQualScore : 5 8 8888888 88 0 555 555 111 11 11 11 8 9 6666666 0
consensus : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCC---CTAATA--T--C--ATTGGT-ATAAATACATGANCATTTCAT-------TACCNACCAA
Reference ( gi|37330 ) : ATGATCATTTCATTA-CCA-------ACCGTGTTCCAGCAACAGT---GCC---CTTAGA--T--C--ATTGGT-ATAAATACATGATCATTTCAT-------TACCTACCAA
gi|37333 : ATGATCATTTCATTA-CCA-------ACCGTGTCCCAACAACAGT---GCC---CTAATA--A--C--ATTGGTAATAAA-ACATGGTCATTCCAT-------TACCTACCAA
gi|37322 : ATGGTCATTCCATTA-CCT-------ACAATGTTCCAACAACAGT---ACC---CCAATA--T--C--ATTGGC-ATAAATACATGATCATTTCAT-------TACCTACCAA
gi|37325 : ATGATCATTTCGTTA-CTA-------ACCGTGTCCCAACAACAGT---ATC---CCAATA--G--C--ATTGGC-ATAAATACATGATCATTCCAT-------TACCTACCAA
gi|37335 : ATGATCATTTCAGTA-CCA-------ACCATGTCACAACAACAGT---GCC---CTGATA--T--C--ATTGCT-ACAAATACATGATCATTTCAT-------TACCAACCA
gi|37320 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---ACC---ATAATA--T--C--ATTGGC-ATAAATACATGATCATTCCAT-------TACCTACCAA
gi|37324 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCC---CTAATA--A--C--ATTGGT-ATCAAAACATGATCATTCCAT-------TACCTACCAA
gi|37345 : ATGAACATTTCATTA-CCA-------ACCATGCTCCAACAACACT---GGC---CTTAAA--T--T--ATTGGT-ATAAATACATGAACATTTCAT-------TACCAAC
gi|37336 : ATGATCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GTC---ATAATA--T--C--ATTGCT-ACAAATACATGATAATTTCAT-------TATCAACCA
gi|37339 : ATGATAATTTCATTA-ACA-------ACCGTGTTCAAACAACAGT---GCC---GTAATA--T--C--ATTGGT-ATAGATACATGATCATTTCGT-------TACTAACC
gi|37337 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCC---TTTATA--T--C--ATTGCT-ATAAATATATGATCATTTCAG-------TACCAACCA
gi|37329 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACGACAGC---GCC---C--AAATTT--C--ATTGAT-ATAAATACATGATCATTTCAT-------TACCAACC
gi|37338 : ATAAGCATGTCATTA-CCA-------ACCGTATCCCAACAACAGT---GCC---CTAATA--A--C--ATTGGT-ATTAATACATGGTCATTCCAT-------TACCTAC
gi|37341 : ATGATCATTTCAATA-TCA-------ACCATGTTCCGACAACAGT---GCC---CTGATA--T--C--ATTGCT-ACAAATACATGATAATTTCAT-------TAACAACC
gi|37326 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCC---CTAATA--T--C--ATTGGT-TTAAATACATGATCATTT--T-------TACC
gi|37321 : ATGGTCATTCCATTA-CCT-------ACCAAGTTCAAACAACGGT---ACC---CCAATA--T--C--ATTAGC-ATAAATACATGATCATTCCAT-------TACCTACCAA
gi|37334 : ATGGACATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCC---CTAAAA--T--T--ATTGGT-ATAAATACATGAACATTTTAT-------AACCAACCA
gi|37327 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAATAACAGT---GCC---CTAATA--T--C--ATTGGA-ATAAATACATGAACATTTCTT-------TACC
gi|37346 : ATGATCATTT--TTA-CCACA-----AC--TGTTCCGACAACAAT---GCC---CTTATA--T--C--ATTAGT-ATAAATACATGAACATTTTAT-------AACCTACCA
gi|37347 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GTC---CTAAAA--T--C--ATTGAT-ATAAATACAGGAACATTTCAT-------TA-TTACC
gi|37342 : ATGAACATTTTATAA-CCT-------ACCATGTTCCAACAACAAC---GCC---CTTATA--T--C--ATTAAT-ATAAATACAGGAACATTTCAT-------TACCAACCA
gi|37323 : ACGATCATTCCATTA-CCT-------ACCAAGTTCCAACAAACGT---ACC---CTAATA--T--C--ATTCGC-ATAAATATATGATCATTCCAT-------TACCTACCAA
gi|37349 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAATAAAAGT---GCC---CTAAAA--T--C--ATTTAT-ATAAATACAGGAACATTTCAT-------TATC-ACCAA
gi|37328 : ATGATCATTTCATNN-NNNNNNNNCTACCAAGTTCCAACAACAGT---GAC---CTAATA--T--C--ATTCGC-ATAAATACACGATCATTCCAT-------TACCTACCAA
gi|37344 : ATGATAATTTCATTA-TCA-------ACCATGTTCAAACAACAGT---G-C---GTAATA--T--C--ATTGGT-ATAAATACATAAGCATGTCAT-------TACCAACC
gi|37331 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACATCAGT---GCC---C--AAA--TTTC--ATTGAT-ATAAATACATGATCATTTCATNNNNNNNNNNCTACCAA
gi|37332 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCC---CTAATA--T--C--ATTTGT-ATAATTACAGGAACATTTCTT-------TACCATCCAA
gi|37340 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCC---TTAATA--T--C--ATTGCT-AT-AATATATGATCATTTCAA-------TATCAACCA
gi|37352 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GCC---ATAAAA--T--C--ATTGAT-ATCAATACAGGAATATTTCAT-------TATC-ACC
gi|37351 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCA---ATTATA--T--C--ATTGAT-ATAAATACATGAATACTTCAT-------TA
gi|37343 : ATGATAATTTCATAA-CTA--------CCATGTTCCAATAATAGT---GCT---CTAATA--T--C--ATTG----CAAATACATGATCATTTCAT-------TACCAACC
gi|37354 : ATGAACATTTTATAA-CCA-------ACCATGTCCCAACAACAATTATGCC---CTTATA--T--C--TTTAAT-ATAAATACAGGAACATTTCAT-------TACAAACCA
gi|37348 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCC---ATAATA--T--C--ATTGAT-ATCAATACAGGAATATTTCAT-------TACTTATC
gi|37368 : ATGATCATTTCATTA-CCA-------ACC
gi|37350 : ccattaactacaaagttccaacgacagtgcccaaatttaattgatataaatacATGAATACTTTATAA-CCA-------ACCAAGTTCCAACAAAAGA---GCC---CAAAAA--T--C--ATTTTA-ATCAATACATGGACATTTCAT-------TACCTACCAA
gi|37353 : ATGAACACTTCATTA-ACA-------ACCCAGTTCCAACAACAGT---ATCATACT---A--T--C--TTTGAT-ATGAATACGGAAACATTTCAT-------TAC
gi|37355 : GATCATTCCATTA-TCT-------ACCAGGTTCCAACAACAGT---ACC---CTAATA--T--C--ATTGGC-ATAAATACATGATCATTCCAT-------TACCTACCAA
gi|37358 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCT---CTGATA--T--C--ATTGAT-ATAAATACAGGAACATTCCAT-------TACCAACCA
gi|37357 : GAACATTCCATTA-CCA-------ACCATGTTCCAACAACAGA---GCC---CTAATA--T--C--ATTGCT-ATAAATATATGAGCATTTCGT-------TAACTACCA
gi|37360 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCT---CTGATA--T--C--ATTGAT-ATAAATACAGGAACATTTCAT-------TACTAACCA
gi|37362 : GAACATTTCATTA-CCA-------ACCATGTTCCAACATCAGT---GTC---ATAAAA--T--C--ATTTGT-ATAAAAACATGAACATTTCAT-------TACCAACCA
gi|37356 : GAACATTTCTTTA-CCA-------TCCAAGTTCCAACAACAGT---GCC---CTAATA--T--C--ATTAGT-ATAAATACATGAACATTTCAT-------TACCAAC
gi|37361 : GAACATTTCATTA-TTA-------CCCATGTTTCAACAACAGT---GCC---CTTATA--T--C--ATTGGA-ATGAATACATGAACATTTCAC-------TATCAACCA
gi|37359 : GAACATTTCATTA-CTA-------ACCATGTTCCAACAACAGA---GCC---CTATTA--T--C--ATTGCT-ATAAATATATGAGCATTTCGT-------TAACTACCA
gi|37364 : GAACATTTCATTA-CAA-------ACCATCTTCCAACATCAGT---GCA---CTAAAA--C--T--ATTGGT-ATAAATACATGAACATTTCAT-------TACCAAC
gi|37363 : GAACATTTCATTA-TCA-------CCAATGTTTCAACAACAGT---GAC---CTTATA--T--C--TTTGGA-ATGAATACATGAACATTTCAC-------TATCAACCA
gi|37365 : GATCATTTTATAA-CCA-------ACCAAGTTTCAGCAAAAGT---GCT---CTGATA--C--A--ATTGAT-ATAAATACAGTAACATTTCAT-------TAC
gi|37366 : TCATTACAGTAACCA-------ACCATGTTCCAAAAACTGT---GCC---CTAAAA--T--C--ATTGGT-ATAAATACATGAACATTTCAT-------TACCAAC
gi|37367 : ATTTCATTA-TCA-------CCCATGTTTCAACAACAGT---GAC---CTTATA--T--C--ATTGGT-ATGAATGCATGAACACTTCAT-------TAACAACC
gi|37368 : CATTA-ACT-------ACAAAGTTCCAACGACAGT---GCC---C--AAA--T--TTAATTGAT-ATAAATACATGATCATTTCAT-------TACCAACC
gi|37326 : cATGATCATTCCAT-------TACCTACCAA
gi|37327 : ATGATCATTCCAT-------TACCTACCAAgttccaacaacagtgccctaatatcattggtttaaatacatgatcatttttacc
Alignments
lowQualScore : 1 0 3333333 0 222 0 1 2
lowQualScore : . . ....... . ... . . .
lowQualScore : 0 8 8888888 6 222 8 0 9
consensus : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
Reference ( family-497 ) : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCNACCAA
gi|37320 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---ACCATAATATCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37321 : ATGGTCATTCCATTA-CCT-------ACCAAGTTCAAACAACGGT---ACCCCAATATCATTAGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37322 : ATGGTCATTCCATTA-CCT-------ACAATGTTCCAACAACAGT---ACCCCAATATCATTGGC-ATAAATACATGATCATTTCATTACCTACCAA
gi|37323 : ACGATCATTCCATTA-CCT-------ACCAAGTTCCAACAAACGT---ACCCTAATATCATTCGC-ATAAATATATGATCATTCCATTACCTACCAA
gi|37324 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATAACATTGGT-ATCAAAACATGATCATTCCATTACCTACCAA
gi|37325 : ATGATCATTTCGTTA-CTA-------ACCGTGTCCCAACAACAGT---ATCCCAATAGCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37326 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATATCATTGGT-TTAAATACATGATCATTT--TTACC
gi|37327 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAATAACAGT---GCCCTAATATCATTGGA-ATAAATACATGAACATTTCTTTACC
gi|37328 : ATGATCATTTCATNN-NNNNNNNNCTACCAAGTTCCAACAACAGT---GACCTAATATCATTCGC-ATAAATACACGATCATTCCATTACCTACCAA
gi|37329 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACGACAGC---GCCCAAATTTCATTGAT-ATAAATACATGATCATTTCATTACCAACC
gi|37330 : ATGATCATTTCATTA-CCA-------ACCGTGTTCCAGCAACAGT---GCCCTTAGATCATTGGT-ATAAATACATGATCATTTCATTACCTACCAA
gi|37331 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACATCAGT---GCCCAAATTTCATTGAT-ATAAATACATGATCATTTCAT
gi|37332 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATATCATTTGT-ATAATTACAGGAACATTTCTTTACCATCCAAnnnnnnnnnnctaccaa
gi|37333 : ATGATCATTTCATTA-CCA-------ACCGTGTCCCAACAACAGT---GCCCTAATAACATTGGTAATAAA-ACATGGTCATTCCATTACCTACCAA
gi|37334 : ATGGACATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAAAATTATTGGT-ATAAATACATGAACATTTTATAACCAACCA
gi|37335 : ATGATCATTTCAGTA-CCA-------ACCATGTCACAACAACAGT---GCCCTGATATCATTGCT-ACAAATACATGATCATTTCATTACCAACCA
gi|37336 : ATGATCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GTCATAATATCATTGCT-ACAAATACATGATAATTTCATTATCAACCA
gi|37337 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCCTTTATATCATTGCT-ATAAATATATGATCATTTCAGTACCAACCA
gi|37338 : ATAAGCATGTCATTA-CCA-------ACCGTATCCCAACAACAGT---GCCCTAATAACATTGGT-ATTAATACATGGTCATTCCATTACCTAC
gi|37339 : ATGATAATTTCATTA-ACA-------ACCGTGTTCAAACAACAGT---GCCGTAATATCATTGGT-ATAGATACATGATCATTTCGTTACTAACC
gi|37340 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCCTTAATATCATTGCT-AT-AATATATGATCATTTCAATATCAACCA
gi|37341 : ATGATCATTTCAATA-TCA-------ACCATGTTCCGACAACAGT---GCCCTGATATCATTGCT-ACAAATACATGATAATTTCATTAACAACC
gi|37342 : ATGAACATTTTATAA-CCT-------ACCATGTTCCAACAACAAC---GCCCTTATATCATTAAT-ATAAATACAGGAACATTTCATTACCAACCA
gi|37343 : ATGATAATTTCATAA-CTA--------CCATGTTCCAATAATAGT---GCTCTAATATCATTG----CAAATACATGATCATTTCATTACCAACC
gi|37344 : ATGATAATTTCATTA-TCA-------ACCATGTTCAAACAACAGT---GCG-TAATATCATTGGT-ATAAATACATAAGCATGTCATTACCAACC
gi|37345 : ATGAACATTTCATTA-CCA-------ACCATGCTCCAACAACACTG--GCCTTAA-ATTATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37346 : ATGATCATTT--TTA-CCACA-----AC--TGTTCCGACAACAAT---GCCCTTATATCATTAGT-ATAAATACATGAACATTTTATAACCTACCA
gi|37347 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GTCCTAAAATCATTGAT-ATAAATACAGGAACATTTCATTA
gi|37348 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCCATAATATCATTGAT-ATCAATACAGGAATATTTCATTACTTATCttacc
gi|37349 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAATAAAAGT---GCCCTAAAATCATTTAT-ATAAATACAGGAACATTTCATTATC-ACCAA
gi|37350 : ATGAATACTTTATAA-CCA-------ACCAAGTTCCAACAAAAGA---GCCCAAAAATCATTTTA-ATCAATACATGGACATTTCATTACCTACCAA
gi|37351 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCAATTATATCATTGAT-ATAAATACATGAATACTTCATTA
gi|37352 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GCCATAAAATCATTGAT-ATCAATACAGGAATATTTCATTATC-ACC
gi|37353 : ATGAACACTTCATTA-ACA-------ACCCAGTTCCAACAACAGT---ATCATACTATCTTTGAT-ATGAATACGGAAACATTTCATTAC
gi|37354 : ATGAACATTTTATAA-CCA-------ACCATGTCCCAACAACAATTATGCCCTTATATCTTTAAT-ATAAATACAGGAACATTTCATTACAAACCA
gi|37355 : GATCATTCCATTA-TCT-------ACCAGGTTCCAACAACAGT---ACCCTAATATCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37356 : GAACATTTCTTTA-CCA-------TCCAAGTTCCAACAACAGT---GCCCTAATATCATTAGT-ATAAATACATGAACATTTCATTACCAAC
gi|37357 : GAACATTCCATTA-CCA-------ACCATGTTCCAACAACAGA---GCCCTAATATCATTGCT-ATAAATATATGAGCATTTCGTTAACTACCA
gi|37358 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCTCTGATATCATTGAT-ATAAATACAGGAACATTCCATTACCAACCA
gi|37359 : GAACATTTCATTA-CTA-------ACCATGTTCCAACAACAGA---GCCCTATTATCATTGCT-ATAAATATATGAGCATTTCGTTAACTACCA
gi|37360 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCTCTGATATCATTGAT-ATAAATACAGGAACATTTCATTACTAACCA
gi|37361 : GAACATTTCATTA-TTA-------CCCATGTTTCAACAACAGT---GCCCTTATATCATTGGA-ATGAATACATGAACATTTCACTATCAACCA
gi|37362 : GAACATTTCATTA-CCA-------ACCATGTTCCAACATCAGT---GTCATAAAATCATTTGT-ATAAAAACATGAACATTTCATTACCAACCA
gi|37363 : GAACATTTCATTA-TCA-------CCAATGTTTCAACAACAGT---GACCTTATATCTTTGGA-ATGAATACATGAACATTTCACTATCAACCA
gi|37364 : GAACATTTCATTA-CAA-------ACCATCTTCCAACATCAGT---GCACTAAAACTATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37365 : GATCATTTTATAA-CCA-------ACCAAGTTTCAGCAAAAGT---GCTCTGATACAATTGAT-ATAAATACAGTAACATTTCATTAC
gi|37366 : CATTACAGTAACCA-------ACCATGTTCCAAAAACTGT---GCCCTAAAATCATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37367 : tATTTCATTA-TCA-------CCCATGTTTCAACAACAGT---GACCTTATATCATTGGT-ATGAATGCATGAACACTTCATTAACAACC
gi|37368 : CATTA-ACT-------ACAAAGTTCCAACGACAGT---GCCCAAATTTAATTGAT-ATAAATACATGATCATTTCATTACCAACC
Alignments
lowQualScore : 1 0 3333333 0 222 0 1 1
lowQualScore : . . ....... . ... . . .
lowQualScore : 0 8 8888888 6 222 8 0 7
consensus : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
Reference ( family-497 ) : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
gi|37320 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---ACCATAATATCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37321 : ATGGTCATTCCATTA-CCT-------ACCAAGTTCAAACAACGGT---ACCCCAATATCATTAGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37322 : ATGGTCATTCCATTA-CCT-------ACAATGTTCCAACAACAGT---ACCCCAATATCATTGGC-ATAAATACATGATCATTTCATTACCTACCAA
gi|37323 : ACGATCATTCCATTA-CCT-------ACCAAGTTCCAACAAACGT---ACCCTAATATCATTCGC-ATAAATATATGATCATTCCATTACCTACCAA
gi|37324 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATAACATTGGT-ATCAAAACATGATCATTCCATTACCTACCAA
gi|37325 : ATGATCATTTCGTTA-CTA-------ACCGTGTCCCAACAACAGT---ATCCCAATAGCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37326 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATATCATTGGT-TTAAATACATGATCATTT--TTACC
gi|37327 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAATAACAGT---GCCCTAATATCATTGGA-ATAAATACATGAACATTTCTTTACC
gi|37328 : ATGATCATTTCATNN-NNNNNNNNCTACCAAGTTCCAACAACAGT---GACCTAATATCATTCGC-ATAAATACACGATCATTCCATTACCTACCAA
gi|37329 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACGACAGC---GCCCAAATTTCATTGAT-ATAAATACATGATCATTTCATTACCAACC
gi|37330 : ATGATCATTTCATTA-CCA-------ACCGTGTTCCAGCAACAGT---GCCCTTAGATCATTGGT-ATAAATACATGATCATTTCATTACCTACCAA
gi|37331 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACATCAGT---GCCCAAATTTCATTGAT-ATAAATACATGATCATTTCAT
gi|37332 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATATCATTTGT-ATAATTACAGGAACATTTCTTTACCATCCAAnnnnnnnnnnctaccaa
gi|37333 : ATGATCATTTCATTA-CCA-------ACCGTGTCCCAACAACAGT---GCCCTAATAACATTGGTAATAAA-ACATGGTCATTCCATTACCTACCAA
gi|37334 : ATGGACATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAAAATTATTGGT-ATAAATACATGAACATTTTATAACCAACCA
gi|37335 : ATGATCATTTCAGTA-CCA-------ACCATGTCACAACAACAGT---GCCCTGATATCATTGCT-ACAAATACATGATCATTTCATTACCAACCA
gi|37336 : ATGATCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GTCATAATATCATTGCT-ACAAATACATGATAATTTCATTATCAACCA
gi|37337 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCCTTTATATCATTGCT-ATAAATATATGATCATTTCAGTACCAACCA
gi|37338 : ATAAGCATGTCATTA-CCA-------ACCGTATCCCAACAACAGT---GCCCTAATAACATTGGT-ATTAATACATGGTCATTCCATTACCTAC
gi|37339 : ATGATAATTTCATTA-ACA-------ACCGTGTTCAAACAACAGT---GCCGTAATATCATTGGT-ATAGATACATGATCATTTCGTTACTAACC
gi|37340 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCCTTAATATCATTGCT-AT-AATATATGATCATTTCAATATCAACCA
gi|37341 : ATGATCATTTCAATA-TCA-------ACCATGTTCCGACAACAGT---GCCCTGATATCATTGCT-ACAAATACATGATAATTTCATTAACAACC
gi|37342 : ATGAACATTTTATAA-CCT-------ACCATGTTCCAACAACAAC---GCCCTTATATCATTAAT-ATAAATACAGGAACATTTCATTACCAACCA
gi|37343 : ATGATAATTTCATAA-CTA--------CCATGTTCCAATAATAGT---GCTCTAATATCATTG----CAAATACATGATCATTTCATTACCAACC
gi|37344 : ATGATAATTTCATTA-TCA-------ACCATGTTCAAACAACAGT---GCG-TAATATCATTGGT-ATAAATACATAAGCATGTCATTACCAACC
gi|37345 : ATGAACATTTCATTA-CCA-------ACCATGCTCCAACAACACTG--GCCTTAA-ATTATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37346 : ATGATCATTT--TTA-CCACA-----AC--TGTTCCGACAACAAT---GCCCTTATATCATTAGT-ATAAATACATGAACATTTTATAACCTACCA
gi|37347 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GTCCTAAAATCATTGAT-ATAAATACAGGAACATTTCATTA
gi|37348 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCCATAATATCATTGAT-ATCAATACAGGAATATTTCATTACttacc
gi|37349 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAATAAAAGT---GCCCTAAAATCATTTAT-ATAAATACAGGAACATTTCATTATC-ACCAAttatc
gi|37350 : ATGAATACTTTATAA-CCA-------ACCAAGTTCCAACAAAAGA---GCCCAAAAATCATTTTA-ATCAATACATGGACATTTCATTACCTACCAA
gi|37351 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCAATTATATCATTGAT-ATAAATACATGAATACTTCATTA
gi|37352 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GCCATAAAATCATTGAT-ATCAATACAGGAATATTTCATTATCA
gi|37353 : ATGAACACTTCATTA-ACA-------ACCCAGTTCCAACAACAGT---ATCATACTATCTTTGAT-ATGAATACGGAAACATTTCATTACcc
gi|37354 : ATGAACATTTTATAA-CCA-------ACCATGTCCCAACAACAATTATGCCCTTATATCTTTAAT-ATAAATACAGGAACATTTCATTACAAACCA
gi|37355 : GATCATTCCATTA-TCT-------ACCAGGTTCCAACAACAGT---ACCCTAATATCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37356 : GAACATTTCTTTA-CCA-------TCCAAGTTCCAACAACAGT---GCCCTAATATCATTAGT-ATAAATACATGAACATTTCATTACCAAC
gi|37357 : GAACATTCCATTA-CCA-------ACCATGTTCCAACAACAGA---GCCCTAATATCATTGCT-ATAAATATATGAGCATTTCGTTAACTACCA
gi|37358 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCTCTGATATCATTGAT-ATAAATACAGGAACATTCCATTACCAACCA
gi|37359 : GAACATTTCATTA-CTA-------ACCATGTTCCAACAACAGA---GCCCTATTATCATTGCT-ATAAATATATGAGCATTTCGTTAACTACCA
gi|37360 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCTCTGATATCATTGAT-ATAAATACAGGAACATTTCATTACTAACCA
gi|37361 : GAACATTTCATTA-TTA-------CCCATGTTTCAACAACAGT---GCCCTTATATCATTGGA-ATGAATACATGAACATTTCACTATCAACCA
gi|37362 : GAACATTTCATTA-CCA-------ACCATGTTCCAACATCAGT---GTCATAAAATCATTTGT-ATAAAAACATGAACATTTCATTACCAACCA
gi|37363 : GAACATTTCATTA-TCA-------CCAATGTTTCAACAACAGT---GACCTTATATCTTTGGA-ATGAATACATGAACATTTCACTATCAACCA
gi|37364 : GAACATTTCATTA-CAA-------ACCATCTTCCAACATCAGT---GCACTAAAACTATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37365 : GATCATTTTATAA-CCA-------ACCAAGTTTCAGCAAAAGT---GCTCTGATACAATTGAT-ATAAATACAGTAACATTTCATTAC
gi|37366 : CATTACAGTAACCA-------ACCATGTTCCAAAAACTGT---GCCCTAAAATCATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37367 : tATTTCATTA-TCA-------CCCATGTTTCAACAACAGT---GACCTTATATCATTGGT-ATGAATGCATGAACACTTCATTAACAACC
gi|37368 : CATTA-ACT-------ACAAAGTTCCAACGACAGT---GCCCAAATTTAATTGAT-ATAAATACATGATCATTTCATTACCAACC
blockSeqs : T NNNNNCT TAT T T
blockSeqs : T CA G T T
blockSeqs : T . . T T
blockSeqs : T . . T T
blockSeqs : T . . T T
blockSeqs : T . . T T
blockSeqs : T . . A A
blockSeqs : T . . T T
blockSeqs : T . . T A
blockSeqs : T . . T T
blockSeqs : T . . T A
blockSeqs : T . . A A
blockSeqs : T . . T A
blockSeqs : A . . A A
blockSeqs : T . . T T
blockSeqs : T . . T A
blockSeqs : G . . T A
blockSeqs : G . . T A
blockSeqs : T . . T A
blockSeqs : G . . T A
blockSeqs : T . . T A
blockSeqs : A . . A A
blockSeqs : T . . T T
blockSeqs : T . . G T
blockSeqs : A . . A A
blockSeqs : T . . A A
blockSeqs : A . . A T
blockSeqs : A . . A A
blockSeqs : A . . A T
blockSeqs : A . . A A
blockSeqs : A . . A T
blockSeqs : A . . A A
blockSeqs : A . . A A
blockSeqs : A . . A A
blockSeqs : T . . T A
blockSeqs : A . . A A
blockSeqs : A . . G A
blockSeqs : T . . A A
blockSeqs : A . . G A
blockSeqs : T . . A .
blockSeqs : A . . A
blockSeqs : A . . A
blockSeqs : A . . A
blockSeqs : A . . A
blockSeqs : T . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqCons :
originalCons : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
finalCons : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
Alignments
lowQualScore : 1 0 3333333 0 222 0 1 1
lowQualScore : . . ....... . ... . . .
lowQualScore : 0 8 8888888 6 222 8 0 7
consensus : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
Reference ( family-497 ) : ATGANCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GCCCTAATATCATTGGT-ATAAATACATGANCATTTCATTACCAACCAA
gi|37320 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---ACCATAATATCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37321 : ATGGTCATTCCATTA-CCT-------ACCAAGTTCAAACAACGGT---ACCCCAATATCATTAGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37322 : ATGGTCATTCCATTA-CCT-------ACAATGTTCCAACAACAGT---ACCCCAATATCATTGGC-ATAAATACATGATCATTTCATTACCTACCAA
gi|37323 : ACGATCATTCCATTA-CCT-------ACCAAGTTCCAACAAACGT---ACCCTAATATCATTCGC-ATAAATATATGATCATTCCATTACCTACCAA
gi|37324 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATAACATTGGT-ATCAAAACATGATCATTCCATTACCTACCAA
gi|37325 : ATGATCATTTCGTTA-CTA-------ACCGTGTCCCAACAACAGT---ATCCCAATAGCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37326 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATATCATTGGT-TTAAATACATGATCATTT--TTACC
gi|37327 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAATAACAGT---GCCCTAATATCATTGGA-ATAAATACATGAACATTTCTTTACC
gi|37328 : ATGATCATTTCATNN-NNNNNNNNCTACCAAGTTCCAACAACAGT---GACCTAATATCATTCGC-ATAAATACACGATCATTCCATTACCTACCAA
gi|37329 : ATGATCATTTCATTA-CCT-------ACCAAGTTCCAACGACAGC---GCCCAAATTTCATTGAT-ATAAATACATGATCATTTCATTACCAACC
gi|37330 : ATGATCATTTCATTA-CCA-------ACCGTGTTCCAGCAACAGT---GCCCTTAGATCATTGGT-ATAAATACATGATCATTTCATTACCTACCAA
gi|37331 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACATCAGT---GCCCAAATTTCATTGAT-ATAAATACATGATCATTTCAT
gi|37332 : ATGATCATTCCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAATATCATTTGT-ATAATTACAGGAACATTTCTTTACCATCCAAnnnnnnnnnnctaccaa
gi|37333 : ATGATCATTTCATTA-CCA-------ACCGTGTCCCAACAACAGT---GCCCTAATAACATTGGTAATAAA-ACATGGTCATTCCATTACCTACCAA
gi|37334 : ATGGACATTTCATTA-CCT-------ACCAAGTTCCAACAACAGT---GCCCTAAAATTATTGGT-ATAAATACATGAACATTTTATAACCAACCA
gi|37335 : ATGATCATTTCAGTA-CCA-------ACCATGTCACAACAACAGT---GCCCTGATATCATTGCT-ACAAATACATGATCATTTCATTACCAACCA
gi|37336 : ATGATCATTTCATTA-CCA-------ACCATGTTCCAACAACAGT---GTCATAATATCATTGCT-ACAAATACATGATAATTTCATTATCAACCA
gi|37337 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCCTTTATATCATTGCT-ATAAATATATGATCATTTCAGTACCAACCA
gi|37338 : ATAAGCATGTCATTA-CCA-------ACCGTATCCCAACAACAGT---GCCCTAATAACATTGGT-ATTAATACATGGTCATTCCATTACCTAC
gi|37339 : ATGATAATTTCATTA-ACA-------ACCGTGTTCAAACAACAGT---GCCGTAATATCATTGGT-ATAGATACATGATCATTTCGTTACTAACC
gi|37340 : ATGAGCATTTCGTTA-ACT-------ACCATGTTCCAACAACAGT---GCCTTAATATCATTGCT-AT-AATATATGATCATTTCAATATCAACCA
gi|37341 : ATGATCATTTCAATA-TCA-------ACCATGTTCCGACAACAGT---GCCCTGATATCATTGCT-ACAAATACATGATAATTTCATTAACAACC
gi|37342 : ATGAACATTTTATAA-CCT-------ACCATGTTCCAACAACAAC---GCCCTTATATCATTAAT-ATAAATACAGGAACATTTCATTACCAACCA
gi|37343 : ATGATAATTTCATAA-CTA--------CCATGTTCCAATAATAGT---GCTCTAATATCATTG----CAAATACATGATCATTTCATTACCAACC
gi|37344 : ATGATAATTTCATTA-TCA-------ACCATGTTCAAACAACAGT---GCG-TAATATCATTGGT-ATAAATACATAAGCATGTCATTACCAACC
gi|37345 : ATGAACATTTCATTA-CCA-------ACCATGCTCCAACAACACTG--GCCTTAA-ATTATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37346 : ATGATCATTT--TTA-CCACA-----AC--TGTTCCGACAACAAT---GCCCTTATATCATTAGT-ATAAATACATGAACATTTTATAACCTACCA
gi|37347 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GTCCTAAAATCATTGAT-ATAAATACAGGAACATTTCATTA
gi|37348 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCCATAATATCATTGAT-ATCAATACAGGAATATTTCATTACttacc
gi|37349 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAATAAAAGT---GCCCTAAAATCATTTAT-ATAAATACAGGAACATTTCATTATC-ACCAAttatc
gi|37350 : ATGAATACTTTATAA-CCA-------ACCAAGTTCCAACAAAAGA---GCCCAAAAATCATTTTA-ATCAATACATGGACATTTCATTACCTACCAA
gi|37351 : ATGAACATTTCACTA-TCA-------ACCACGTTCCAAAAACAGT---GCAATTATATCATTGAT-ATAAATACATGAATACTTCATTA
gi|37352 : ATGAACATTTCATTA-CCA-------ACAATGTTCCAACAAAAGT---GCCATAAAATCATTGAT-ATCAATACAGGAATATTTCATTATCA
gi|37353 : ATGAACACTTCATTA-ACA-------ACCCAGTTCCAACAACAGT---ATCATACTATCTTTGAT-ATGAATACGGAAACATTTCATTACcc
gi|37354 : ATGAACATTTTATAA-CCA-------ACCATGTCCCAACAACAATTATGCCCTTATATCTTTAAT-ATAAATACAGGAACATTTCATTACAAACCA
gi|37355 : GATCATTCCATTA-TCT-------ACCAGGTTCCAACAACAGT---ACCCTAATATCATTGGC-ATAAATACATGATCATTCCATTACCTACCAA
gi|37356 : GAACATTTCTTTA-CCA-------TCCAAGTTCCAACAACAGT---GCCCTAATATCATTAGT-ATAAATACATGAACATTTCATTACCAAC
gi|37357 : GAACATTCCATTA-CCA-------ACCATGTTCCAACAACAGA---GCCCTAATATCATTGCT-ATAAATATATGAGCATTTCGTTAACTACCA
gi|37358 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCTCTGATATCATTGAT-ATAAATACAGGAACATTCCATTACCAACCA
gi|37359 : GAACATTTCATTA-CTA-------ACCATGTTCCAACAACAGA---GCCCTATTATCATTGCT-ATAAATATATGAGCATTTCGTTAACTACCA
gi|37360 : GATCATTTTATAA-CCA-------ACCATGTTCCAGCAAAAGT---GCTCTGATATCATTGAT-ATAAATACAGGAACATTTCATTACTAACCA
gi|37361 : GAACATTTCATTA-TTA-------CCCATGTTTCAACAACAGT---GCCCTTATATCATTGGA-ATGAATACATGAACATTTCACTATCAACCA
gi|37362 : GAACATTTCATTA-CCA-------ACCATGTTCCAACATCAGT---GTCATAAAATCATTTGT-ATAAAAACATGAACATTTCATTACCAACCA
gi|37363 : GAACATTTCATTA-TCA-------CCAATGTTTCAACAACAGT---GACCTTATATCTTTGGA-ATGAATACATGAACATTTCACTATCAACCA
gi|37364 : GAACATTTCATTA-CAA-------ACCATCTTCCAACATCAGT---GCACTAAAACTATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37365 : GATCATTTTATAA-CCA-------ACCAAGTTTCAGCAAAAGT---GCTCTGATACAATTGAT-ATAAATACAGTAACATTTCATTAC
gi|37366 : CATTACAGTAACCA-------ACCATGTTCCAAAAACTGT---GCCCTAAAATCATTGGT-ATAAATACATGAACATTTCATTACCAAC
gi|37367 : tATTTCATTA-TCA-------CCCATGTTTCAACAACAGT---GACCTTATATCATTGGT-ATGAATGCATGAACACTTCATTAACAACC
gi|37368 : CATTA-ACT-------ACAAAGTTCCAACGACAGT---GCCCAAATTTAATTGAT-ATAAATACATGATCATTTCATTACCAACC