lowQualScore                  :            1                                                            
lowQualScore                  :         6  5         3            0      22222               1          
lowQualScore                  :         .  .         .            .      .....               .          
lowQualScore                  :         0  0         4            7      11111               0          
consensus                     :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
Reference ( gi|33530 )        :  GAAATGCCACGGAACATTTT-ATTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33523                      :  GAAATGCTACCGAACATTTT-ACTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGTCGTG
gi|33524                      : gGAAATGCTACCGAACATTTT-ATTGCATGACATGTATGTG-----ATGATTTGGGAGATT-ACCAGGCGTG
gi|33525                      : gGAAATGCTACCGAACATTTT-ATTGCATCACATTTATGTG-----ATAGTTTGGGAGTTT-ACCAGTCGTG
gi|33526                      : gGAAATGCTACCGAACATTTT-ATTACATCACATTTATATG-----ATGGCTTGGGAGATT-ACCTGGCGTG
gi|33528                      : gGAAATGCTACTGAACATTTA-ATTGCATCACATTTATGTG-----ATGGTTTCGGAGATT-ACCAGTCGTG
gi|33527                      : gGAAATGCTATCGATTATTTT-ATTGTATCATATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33531                      : gGAAATGCTACCGATTATTTT-ATTGCATCACATTAAT-----------GTTTAGAAGATTAACCAGTCGTG
gi|33532                      :      TGCTACCGAACATTTT-ATTGCATCACATTTTTGTA-----GTGGTTCGGGAGATT-ACCTGGCGTG
gi|33533                      :             GAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGG-GATT-ACCAG
gi|33534                      :        ctatcGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGGAAA-T-ACCAG
gi|33529                      :        ctatcGAACAT----ATTGCATCACATTTATGTG-----ATGATTTTGGAGACT-ACCAGG
gi|33535                      :   ggaagttcttccACATTTT-ATTGCATCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33536                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33537                      :               ACATTTT-ATTGCATCACATTTATGTA-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33539                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCATG
gi|33538                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33540                      :               ACATTTT-ATTGCATCACATCTATTTG-----ATGGTTTGGGAGATT-GCCAGGCGTG
gi|33541                      :               ACATTTTTATTGCATCACATTTATATG-----ATGGTTTGGGAAATT-ACCAGGCGTG
gi|33542                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33543                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33544                      :               ACATTTT-ATTGCATCAAATTGATGTG-----ATGGTTCGGGAGGTT-ACCAGGCGTG
gi|33545                      :               ACATTTG-GTTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33546                      :               ATATTTT-ATTGCATCATATTTTTGTG-----ATGGTTCGGGAGATA-ACCAGGCGT
gi|33547                      :               ACATTTT-ATAGCGTTACATCTATGTG-----ATGGTGTGGGAGATC-ACCAGGCGTG
gi|33548                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGTGTG
gi|33549                      :               ACCTTTT-ATTGCATCACATCTATGTG-----ATGTTTCAGGAGATA-ACCAGGCGTG
gi|33550                      :               ACATTTT-ATTGTATCACATTTTTGTG-----ATTGTTCGGGAAATT-ACGAGGCGTG
gi|33552                      :               ACATTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGAGAT
gi|33551                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTAGGGAGATC-ACCTGGCGTG
gi|33553                      :               ACATTTT-ATTGCATCACATCTATGTGNNNNNNNNNNTCAGGAGATT-ACCAGGCGT
gi|33554                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGAT
gi|33555                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33557                      :               ACATTTT-ATTGCANNNNNNNNNN---------TGGTTCGGGAGATT-ACCAGGCGTG
gi|33556                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33558                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTTGGGAGA
gi|33559                      :               ACATTTT-ACTGCATCACATCTATGTG-----ATGGTTCATGAGA
gi|33560                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33561                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGT
gi|33562                      :                CATTTA-ATTGCATCACATTTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33563                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33564                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGCGTG
gi|33565                      :                CATTTA-ATTGCATCACATTTATATG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33566                      :                CATTTT-ATTGTATCACATATATGTG-----ATGGTTC-AGAGATT-ACCAAACGTG
gi|33567                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33568                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATC-ACCAGACGTG
gi|33569                      :                  TTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33570                      :                  TTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGACATT-ACCAGGCGT
gi|33571                      :                                     ATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG





Alignments
lowQualScore                  :                      3                   22222               0          
lowQualScore                  :                      .                   .....               .          
lowQualScore                  :                      3                   00000               9          
consensus                     :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
Reference ( family-495 )      :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33523                      :  GAAATGCTACCGAACATTTT-ACTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGTCGTG
gi|33524                      : gGAAATGCTACCGAACATTTT-ATTGCATGACATGTATGTG-----ATGATTTGGGAGATT-ACCAGGCGTG
gi|33525                      : gGAAATGCTACCGAACATTTT-ATTGCATCACATTTATGTG-----ATAGTTTGGGAGTTT-ACCAGTCGTG
gi|33526                      : gGAAATGCTACCGAACATTTT-ATTACATCACATTTATATG-----ATGGCTTGGGAGATT-ACCTGGCGTG
gi|33527                      : gGAAATGCTATCGATTATTTT-ATTGTATCATATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33528                      : gGAAATGCTACTGAACATTTA-ATTGCATCACATTTATGTG-----ATGGTTTCGGAGATT-ACCAGTCGTG
gi|33529                      : gGAAGTTCTTCCGAACAT----ATTGCATCACATTTATGTG-----ATGATTTTGGAGACT-ACCAGG
gi|33530                      : gGAAATGCCACGGAACATTTT-ATTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33531                      :  GAAATGCTACCGATTATTTT-ATTGCATCACAT-----TA-----AT-GTTTAGAAGATTAACCAGTCGTG
gi|33532                      :      TGCTACCGAACATTTT-ATTGCATCACATTTTTGTA-----GTGGTTCGGGAGATT-ACCTGGCGTG
gi|33533                      :        CTATCGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGG-GATT-ACCAG
gi|33534                      :        CTATCGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGGAAA-T-ACCAG
gi|33535                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33536                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33537                      :               ACATTTT-ATTGCATCACATTTATGTA-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33538                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33539                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCATG
gi|33540                      :               ACATTTT-ATTGCATCACATCTATTTG-----ATGGTTTGGGAGATT-GCCAGGCGTG
gi|33541                      :               ACATTTTTATTGCATCACATTTATATG-----ATGGTTTGGGAAATT-ACCAGGCGTG
gi|33542                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33543                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33544                      :               ACATTTT-ATTGCATCAAATTGATGTG-----ATGGTTCGGGAGGTT-ACCAGGCGTG
gi|33545                      :               ACATTTG-GTTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33546                      :               ATATTTT-ATTGCATCATATTTTTGTG-----ATGGTTCGGGAGATA-ACCAGGCGT
gi|33547                      :               ACATTTT-ATAGCGTTACATCTATGTG-----ATGGTGTGGGAGATC-ACCAGGCGTG
gi|33548                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGTGTG
gi|33549                      :               ACCTTTT-ATTGCATCACATCTATGTG-----ATGTTTCAGGAGATA-ACCAGGCGTG
gi|33550                      :               ACATTTT-ATTGTATCACATTTTTGTG-----ATTGTTCGGGAAATT-ACGAGGCGTG
gi|33551                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTAGGGAGATC-ACCTGGCGTG
gi|33552                      :               ACATTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGAGAT
gi|33553                      :               ACATTTT-ATTGCATCACATCTATGTGNNNNNNNNNNTCAGGAGATT-ACCAGGCGT
gi|33554                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGAT
gi|33555                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33556                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33557                      :               ACATTTT-ATTGCANNNNNNNNNN---------TGGTTCGGGAGATT-ACCAGGCGTG
gi|33558                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTTGGGAGA
gi|33559                      :               ACATTTT-ACTGCATCACATCTATGTG-----ATGGTTCATGAGA
gi|33560                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33561                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGT
gi|33562                      :                CATTTA-ATTGCATCACATTTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33563                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33564                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGCGTG
gi|33565                      :                CATTTA-ATTGCATCACATTTATATG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33566                      :                CATTTT-ATTGTATCACATATATGTG-----ATGGTTC-AGAGATT-ACCAAACGTG
gi|33567                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33568                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATC-ACCAGACGTG
gi|33569                      :                  TTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33570                      :                  TTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGACATT-ACCAGGCGT
gi|33571                      :                                     ATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG





Alignments
lowQualScore                  :                      3                   22222               0          
lowQualScore                  :                      .                   .....               .          
lowQualScore                  :                      3                   00000               9          
consensus                     :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
Reference ( family-495 )      :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33523                      :  GAAATGCTACCGAACATTTT-ACTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGTCGTG
gi|33524                      : gGAAATGCTACCGAACATTTT-ATTGCATGACATGTATGTG-----ATGATTTGGGAGATT-ACCAGGCGTG
gi|33525                      : gGAAATGCTACCGAACATTTT-ATTGCATCACATTTATGTG-----ATAGTTTGGGAGTTT-ACCAGTCGTG
gi|33526                      : gGAAATGCTACCGAACATTTT-ATTACATCACATTTATATG-----ATGGCTTGGGAGATT-ACCTGGCGTG
gi|33527                      : gGAAATGCTATCGATTATTTT-ATTGTATCATATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33528                      : gGAAATGCTACTGAACATTTA-ATTGCATCACATTTATGTG-----ATGGTTTCGGAGATT-ACCAGTCGTG
gi|33529                      : gGAAGTTCTTCCGAACAT----ATTGCATCACATTTATGTG-----ATGATTTTGGAGACT-ACCAGG
gi|33530                      : gGAAATGCCACGGAACATTTT-ATTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33531                      :  GAAATGCTACCGATTATTTT-ATTGCATCACAT-----TA-----AT-GTTTAGAAGATTAACCAGTCGTG
gi|33532                      :      TGCTACCGAACATTTT-ATTGCATCACATTTTTGTA-----GTGGTTCGGGAGATT-ACCTGGCGTG
gi|33533                      :        CTATCGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGG-GATT-ACCAG
gi|33534                      :        CTATCGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGGAAA-T-ACCAG
gi|33535                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33536                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33537                      :               ACATTTT-ATTGCATCACATTTATGTA-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33538                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33539                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCATG
gi|33540                      :               ACATTTT-ATTGCATCACATCTATTTG-----ATGGTTTGGGAGATT-GCCAGGCGTG
gi|33541                      :               ACATTTTTATTGCATCACATTTATATG-----ATGGTTTGGGAAATT-ACCAGGCGTG
gi|33542                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33543                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33544                      :               ACATTTT-ATTGCATCAAATTGATGTG-----ATGGTTCGGGAGGTT-ACCAGGCGTG
gi|33545                      :               ACATTTG-GTTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33546                      :               ATATTTT-ATTGCATCATATTTTTGTG-----ATGGTTCGGGAGATA-ACCAGGCGT
gi|33547                      :               ACATTTT-ATAGCGTTACATCTATGTG-----ATGGTGTGGGAGATC-ACCAGGCGTG
gi|33548                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGTGTG
gi|33549                      :               ACCTTTT-ATTGCATCACATCTATGTG-----ATGTTTCAGGAGATA-ACCAGGCGTG
gi|33550                      :               ACATTTT-ATTGTATCACATTTTTGTG-----ATTGTTCGGGAAATT-ACGAGGCGTG
gi|33551                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTAGGGAGATC-ACCTGGCGTG
gi|33552                      :               ACATTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGAGAT
gi|33553                      :               ACATTTT-ATTGCATCACATCTATGTGNNNNNNNNNNTCAGGAGATT-ACCAGGCGT
gi|33554                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGAT
gi|33555                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33556                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33557                      :               ACATTTT-ATTGCANNNNNNNNNN---------TGGTTCGGGAGATT-ACCAGGCGTG
gi|33558                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTTGGGAGA
gi|33559                      :               ACATTTT-ACTGCATCACATCTATGTG-----ATGGTTCATGAGA
gi|33560                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33561                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGT
gi|33562                      :                CATTTA-ATTGCATCACATTTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33563                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33564                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGCGTG
gi|33565                      :                CATTTA-ATTGCATCACATTTATATG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33566                      :                CATTTT-ATTGTATCACATATATGTG-----ATGGTTC-AGAGATT-ACCAAACGTG
gi|33567                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33568                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATC-ACCAGACGTG
gi|33569                      :                  TTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33570                      :                  TTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGACATT-ACCAGGCGT
gi|33571                      :                                     ATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG


blockSeqs                     :                      T                   NNNNN
blockSeqs                     :                      T                   .    
blockSeqs                     :                      T                   .    
blockSeqs                     :                      T                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                      .                   .    
blockSeqs                     :                                          .    


blockSeqCons                  :  
originalCons                  :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
finalCons                     :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG





Alignments
lowQualScore                  :                      3                   22222               0          
lowQualScore                  :                      .                   .....               .          
lowQualScore                  :                      3                   00000               9          
consensus                     :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
Reference ( family-495 )      :  GAAATGCTACCGAACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33523                      :  GAAATGCTACCGAACATTTT-ACTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGTCGTG
gi|33524                      : gGAAATGCTACCGAACATTTT-ATTGCATGACATGTATGTG-----ATGATTTGGGAGATT-ACCAGGCGTG
gi|33525                      : gGAAATGCTACCGAACATTTT-ATTGCATCACATTTATGTG-----ATAGTTTGGGAGTTT-ACCAGTCGTG
gi|33526                      : gGAAATGCTACCGAACATTTT-ATTACATCACATTTATATG-----ATGGCTTGGGAGATT-ACCTGGCGTG
gi|33527                      : gGAAATGCTATCGATTATTTT-ATTGTATCATATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33528                      : gGAAATGCTACTGAACATTTA-ATTGCATCACATTTATGTG-----ATGGTTTCGGAGATT-ACCAGTCGTG
gi|33529                      : gGAAGTTCTTCCGAACAT----ATTGCATCACATTTATGTG-----ATGATTTTGGAGACT-ACCAGG
gi|33530                      : gGAAATGCCACGGAACATTTT-ATTGCATCACATTTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33531                      :  GAAATGCTACCGATTATTTT-ATTGCATCACAT-----TA-----AT-GTTTAGAAGATTAACCAGTCGTG
gi|33532                      :      TGCTACCGAACATTTT-ATTGCATCACATTTTTGTA-----GTGGTTCGGGAGATT-ACCTGGCGTG
gi|33533                      :        CTATCGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGG-GATT-ACCAG
gi|33534                      :        CTATCGAACCTTTT-ATTGCATCACTTTTATGTG-----ATGGTTTGGGAAA-T-ACCAG
gi|33535                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33536                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33537                      :               ACATTTT-ATTGCATCACATTTATGTA-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33538                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33539                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCATG
gi|33540                      :               ACATTTT-ATTGCATCACATCTATTTG-----ATGGTTTGGGAGATT-GCCAGGCGTG
gi|33541                      :               ACATTTTTATTGCATCACATTTATATG-----ATGGTTTGGGAAATT-ACCAGGCGTG
gi|33542                      :               ACATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33543                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33544                      :               ACATTTT-ATTGCATCAAATTGATGTG-----ATGGTTCGGGAGGTT-ACCAGGCGTG
gi|33545                      :               ACATTTG-GTTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33546                      :               ATATTTT-ATTGCATCATATTTTTGTG-----ATGGTTCGGGAGATA-ACCAGGCGT
gi|33547                      :               ACATTTT-ATAGCGTTACATCTATGTG-----ATGGTGTGGGAGATC-ACCAGGCGTG
gi|33548                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGTGTG
gi|33549                      :               ACCTTTT-ATTGCATCACATCTATGTG-----ATGTTTCAGGAGATA-ACCAGGCGTG
gi|33550                      :               ACATTTT-ATTGTATCACATTTTTGTG-----ATTGTTCGGGAAATT-ACGAGGCGTG
gi|33551                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTAGGGAGATC-ACCTGGCGTG
gi|33552                      :               ACATTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGAGAT
gi|33553                      :               ACATTTT-ATTGCATCACATCTATGTGNNNNNNNNNNTCAGGAGATT-ACCAGGCGT
gi|33554                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGAT
gi|33555                      :               ACATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33556                      :               ACATTTTTATTGCATCACATCTATGTG-----ATGGTTCAGGAGA
gi|33557                      :               ACATTTT-ATTGCANNNNNNNNNN---------TGGTTCGGGAGATT-ACCAGGCGTG
gi|33558                      :               ACATTTT-AGTGCATCACTTATATGTG-----ATGGTTTGGGAGA
gi|33559                      :               ACATTTT-ACTGCATCACATCTATGTG-----ATGGTTCATGAGA
gi|33560                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG
gi|33561                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGT
gi|33562                      :                CATTTA-ATTGCATCACATTTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33563                      :                CATTTT-ATTGCGTCACATCTATGTG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33564                      :                CATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATA-ACCAGGCGTG
gi|33565                      :                CATTTA-ATTGCATCACATTTATATG-----ATGGTTCAGGAGATT-ACCAGGCGTG
gi|33566                      :                CATTTT-ATTGTATCACATATATGTG-----ATGGTTC-AGAGATT-ACCAAACGTG
gi|33567                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33568                      :                 ATTTT-ATTGCATCACATCTATGTG-----ATGGTTCAGGAGATC-ACCAGACGTG
gi|33569                      :                  TTTT-ATTGCATCACATCTATGTG-----ATGGTTCGGGAGATT-ACCAGGCGTG
gi|33570                      :                  TTTT-ATTGCATCACATTTTTGTG-----ATGGTTTGGGACATT-ACCAGGCGT
gi|33571                      :                                     ATGTG-----ATGGTTTGGGAGATT-ACCAGGCGTG