lowQualScore : 1111111111111111111111111 11 2222222222222222222222222222 1111111111111111111111111 11111111111111111111111111
lowQualScore : 1 0 7777777777777777777777777 7777777777777777777777777 7777777777777777777777777 5555555555555555555555555 7777777777777777777777777 444444444444444444 6666666666666666666666666 44 1 0000000000000000000000000000 2222222222 6666666666666666666666666 6666666666666666666666666 3333333333333333333333333 6666666666666666666666666 99999999999999999999999999 444444444444444444 55 66666666666666666666666666 4
lowQualScore : . . ......................... ......................... ......................... ......................... ......................... .................. ......................... .. . ............................ .......... ......................... ......................... ......................... ......................... .......................... .................. .. .......................... .
lowQualScore : 6 8 7777777777777777777777777 7777777777777777777777777 7777777777777777777777777 4444444444444444444444444 7777777777777777777777777 999999999999999999 6666666666666666666666666 66 3 2222222222222222222222222222 9999999999 6666666666666666666666666 6666666666666666666666666 1111111111111111111111111 6666666666666666666666666 22222222222222222222222222 888888888888888888 44 00000000000000000000000000 3
consensus : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
Reference ( gi|44212 ) : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-TG-AA-------------------------AC-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-AAGAAAAC--------------------------CTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44222 : CCGAGAAAA-CCT-CGCCTGTAAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AC-TCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ATTTGATCT------------------CC-TTGAAAAC--------------------------CTCGCCTGTGAAGGCCATAAACTGAAGGACTCAAGCTGCGAG
gi|44217 : CCGATAAAATCCT-CGCCTGTGAGGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCAGGT----------GAAGTCCATCA-------------------------A-------------------------G-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGaa
gi|44219 : CCGAGAAAA-CCT-CGCAGGTGAAGTCCATCA-------------------------AG-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAGGTCCATGA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCTaa
gi|44226 : CCGAGAAAC-TCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------TTTGATCT------------------C-------------------------CT-TG-AA-------------------------AA-CCTCGCCTGT----------GAAGGCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------GC-GAGAAAAC--------------------------CTCGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCCCCGAGaggagaa
gi|44220 : CCGTGAAGA-CCC-CGCCTGTGAAGTCTAAAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAATCT------------------C-------------------------CG-AG-AA-------------------------AA-CTTCTCCTGT----------GAAGTCCGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAAAAC--------------------------CTCTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCAAGaa
gi|44221 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AC-CCATGCCTGT----------GAAGTACATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ATTCGATCT------------------CC-GTGAAGAC--------------------------CCCGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCTCCGAGaa
gi|44225 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAATCT------------------C-------------------------CA-TG-AA-------------------------AA-CCTCTCCTGT----------GAAG-CCGTAA-------------------------A-------------------------C-------------------------TGA-------------------------CGG-------------------------CCTCAAGCT------------------CT-CAGAAAAC--------------------------CTCGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCTCCGAGaa
gi|44228 : CCAAGAAAA-CCT-CGCCTGTGAGGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AGTAA-------------------------AT-CTTCGCCTGT----------GAACTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ATTCGATCT------------------GC-TTGAAAAC--------------------------CTCGCCTGTGAAGTCGATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44223 : CCGAGAAAA-CCA-CGCATGTGCAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCGGT----------GAAGTCCATCA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCGATCT------------------CC-GAGAATAC--------------------------CTCGCCTGTGAAGTCAATAAACTGAACGACTCAAGCTCCGAGaa
gi|44227 : CCGAGAAAA-CCT-CACCTGTGAAGTCTGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GT-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-CGTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------TCTCAAGCT------------------CC-GAGAATAC--------------------------TTCGCCTATGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44236 : CCGAGTAAA-TCTTCGCCTGTGAACTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------TTCGATCT------------------G-------------------------CT-TG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCGATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44224 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAA-------------------------AC-------------------------TAA-------------------------AG-------------------------GT-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-CGTCGTCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------TCTCAAGCT------------------CC-GAGAATAC--------------------------GTCGCCTGTGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44234 : CCGAGAAAC-CCA-TGCCTGTGAAGTACATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------TTCGATCT------------------C-------------------------CG-TG-AA-------------------------GA-CCCCGCCTGT----------GAAGTCTAAAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAATCT------------------CC-GAGAAAAC--------------------------TTCTCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44233 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATCA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCGATCT------------------C-------------------------CG-AG-AA-------------------------TA-CCTCGCCTGT----------GAAGTCAATAA-------------------------A-------------------------C-------------------------TGA-------------------------ACG-------------------------ACTCAAGCT------------------CC-GAGAATAC--------------------------GTCGCCTGTGAAGTCCATAAACTGACGGTATCAAGCTCCGAGaa
gi|44245 : CCGAGAAAA-CCT-CGCCTGCGCAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTTAAGCT------------------C-------------------------CG-AGTAA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TTA-------------------------AGG-------------------------ATTCGATCT------------------CC-GTGAAAAC--------------------------CTCGCTTGTGAAGTCGATAAATTGAACGATTCAAGCTCCGaa
gi|44229 : CCGAGAATA-CGT-CGCCTGTGATGTCAATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCGATCT------------------C-------------------------CG-AG-AA-------------------------TA-CCTCGCCTGT----------GAAGACTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGT-------------------------GCTCAAGCT------------------CC-GAGAAAAT--------------------------CTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGtgaa
gi|44241 : CTGAGAAAA-CCT-CGCCTGTGCAGTATTTAA-------------------------AC-------------------------TAA-------------------------AT-------------------------GA-------------------------CTCAGGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCTGTAA-------------------------A-------------------------C-------------------------TAA-------------------------AGG-------------------------TCTCAAGCT------------------CC-GAGAATAC--------------------------GTCGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGaa
gi|44235 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GT-------------------------CTCAAGGT------------------C-------------------------CG-AG-AA-------------------------TA-CGTCGCCTGC----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------TCTCAAGCT------------------CC-GAAAATAC--------------------------GTCGCCTGTGAAATCCATAAACTGAAAGACTGGATCTCCGAGaa
gi|44237 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-TG-AA-------------------------AC-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-AAGAAaa
gi|44238 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GT-------------------------CTCAGGCT------------------C-------------------------TG-AG-AA-------------------------CA-CGTCGCCTAT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCGATCT------------------CC-GAGAATAC--------------------------ATCGCCTGTGAAGTCCGTAAACTGAAGGACTCA
gi|44230 : CCGAGAAAA-TCT-CTCCTGTGAAGTCTGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-CGTCGCTTAT----------GAAATCCATGA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACCCAAGCT------------------CA-GAGAAACA--------------------------CTCTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAG
gi|44239 : CCGAGAATA-CCT-CGCCTGTGAAGACTGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------TG-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-TCTCTCCTGT----------GAAGTCTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAATAC--------------------------GTCGCTTATGAAATCCATGAACTGAAGGACCCAAGCTCAGAGaa
gi|44232 : CCGAGAAAA-TCT-TTCCTATGAAGTCTGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-TATCGCTTAT----------GAAATCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CA-GAGAAAAA--------------------------CTCACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCTCAGAGaa
gi|44246 : CCGAGAATA-CGT-CGTCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GT-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-CGTCGCCTGT----------GAAGTCCATCA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCGATCT------------------CC-GAGAAAAC--------------------------ATCGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCTCCGAGaa
gi|44242 : CCGAGAAAA-CAT-CGCCTTTGAAGACTGTAC-------------------------AC-------------------------TGA-------------------------AG-------------------------TG-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-TCTTTCCTGT----------GAAATCTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAATAC--------------------------ATCGCTTGTGAAGTCCATAAATTGAAGGACACAAGCTCCGAGaa
gi|44231 : CCGAGAATA-CTT-CGCCTATGAAGTCCATCA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCGATCT------------------C-------------------------CG-AG-AA-------------------------TA-TATCGCCTTT----------GAAGACTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGT-------------------------GCTCAAGCT------------------CC-GAGAAAAT--------------------------CTTTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44247 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GT-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-CTTCGCCTAT----------GAAGTCCATCA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCGATCT------------------CC-GAGAATAT--------------------------ATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44244 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------CG-------------------------GT-------------------------ATCAAGCT------------------C-------------------------CG-AG-AA-------------------------TA-CGTCGCCTGT----------GATGTCAATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCGATCT------------------CC-GAGAATAC--------------------------CTCGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44243 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AC-------------------------GA-------------------------CTCAAGCT------------------C-------------------------CA-AG-AA-------------------------AA-CCTCTCCTCT----------GAAG-CCGTAA-------------------------A-------------------------C-------------------------TGA-------------------------CGG-------------------------TCTCAAGCT------------------CT-GAGATTTC--------------------------CTCGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCTCCGAGaa
gi|44240 : CCGAAAATA-CGT-CGCCTGTGAAATCCATAA-------------------------AC-------------------------TGA-------------------------AA-------------------------GA-------------------------CTGGATCT------------------C-------------------------CG-AG-AA-------------------------TA-CATCGCCTTT----------GAAGACTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGT-------------------------GCTCAAGCT------------------CC-GATAAAAT--------------------------CTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44210 : CCGAGAATA-CAT-CGCTTGTGAAGTCCATAA-------------------------AT-------------------------TGA-------------------------AG-------------------------GA-------------------------CACAAGCT------------------C-------------------------CG-AG-AA-------------------------A----------------------------------------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCTCCGAGa
gi|44249 : CCGAGAATA-CGT-CGCCTGCGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GT-------------------------CTCAAGCT------------------C-------------------------CG--A-AA-------------------------ATACGTCGCCTGT----------GAAATCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AAG-------------------------ACTGGATCT------------------CC-GAGAATAC--------------------------ATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAaa
gi|44248 : CCGAGAATA-CAT-CGCCTTTGAAGACTGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------TG-------------------------CTCAAGCT------------------C-------------------------CG-AT-AA-------------------------AA-TCTCTCCTGT----------GAAGTCTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGACTAG--------------------------GTCGCTTATGAAATCCATAAACTAAAGGACTCAAGCTCAGAGtaa
gi|44207 : CCGAGAAAA-CCT-CGCTTGTGAAGTCTATAA-------------------------AC-------------------------TGA-------------------------AG--------------------------------------------------------AACT------------------C-------------------------------AA-------------------------GC-CC-CG-----------------AG---A-AA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCTCTGAGaa
gi|44216 : CCGAGAAAA-CCA-CGCCTGTGGAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------ATCAAGCT------------------C-------------------------CG-AG-A----------------------------------------------------------AA-------------------------A-------------------------C-------------------------TGA-------------------------AGA-------------------------ACTCAAGCT------------------CC-GAGATAAC--------------------------CACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44215 : CCGAAAAAAACCT-CGCCTGTGAGGTCCATGA-------------------------CC-------------------------TGA-------------------------AG-------------------------G-------------------------------GCT------------------C--------------------------------A-------------------------AG-CTTCG-----------------AG---A-AA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAAAAAAC--------------------------CTCGCCTGTGAGGTCCATGACCTGAAAGGCTCAAGCTCCGAGaa
gi|44208 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------CCAGGAAAACTGAAGGGCTCAAATTCCGATA-AA-------------------------AT-CCTCGCCTGT----------GAGGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAAaa
gi|44250 : CCGAGACTA-GGT-CGCTTATGAAATCCATAA-------------------------AC-------------------------TAA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------AG-AG-AA-------------------------AA-ACTCACCTGTNNNNNNNNNNGAAG-CCGTAA-------------------------A-------------------------C-------------------------TAA-------------------------CGG-------------------------TCTGAAGCT------------------CT-GAGAAAAC--------------------------CTCGCCTGTGCAGTATTTAAACTAAATGACTCAGGCTCCGAG
gi|44206 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AGAACTCACGCTCAGAGAAAACTGAAGGG-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAGGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-AGGAAaa
gi|44209 : CCGAGAAAA-CCT-CTCCTGTGAAGTCCATAA-------------------------ACTGAAGGACTCAAGCTCCAAGAAAACTGA-------------------------AG-------------------------GA-------------------------CTCTAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------ACG-------------------------ACTCAAGCT------------------CC-AAGAA
gi|44211 : CCGAGAAAA-CCT-CGCCTGTGAAATCCATAATCTGAAGGACTCAAGCTACAAGAAAAC-------------------------TGA-------------------------AG-------------------------GG-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAATCT------------------CC-ATGAA
gi|44213 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GAATCAAGCTAGGAGAAAACTGAAGTGCTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCACGCATGT----------GCAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GAGAA
gi|44214 : CCGAGAAAA-CCT-CGCCTGTGATGTCCATAA-------------------------AC-------------------------TGAGAGACTAAGGCTCCGAGAAAACTGAAG-------------------------GG-------------------------CTCAAGCT------------------C-------------------------CG-AA-AA-------------------------AAACCTCGCCTGT----------GAGGTCCATGA-------------------------C-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------TC-GAGAA
gi|44218 : CCGTGAAAA-CCT-CGCTTGTGAAGTCGATAA-------------------------AT-------------------------TGA-------------------------AC-------------------------GA-------------------------TTCAAGCT------------------C-------------------------CG-TG-AAATCTGAAGGGCTCAAGCTCCGATAAAT-CCTCGCCTGT----------GAAGTTCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------AATCAAGCT------------------CC-GAGAA
gi|44257 : CCGAGAAAA-CCT-CGCCTGTGATGTCCATAA-------------------------AC-------------------------TGA-------------------------GA-------------------------GA-------------------------CTAAGGCT------------------C-------------------------CG-AG-AA-------------------------
gi|44251 : tcgataaactaaaaggctcaagcttcgagaaaaactgtacgaCCGAGAATA-CAT-CGCCTGTGAAGTCCGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCA
gi|44252 : CGAGAAAA-CCT-CGCCTGTGAAGTCCATAA-------------------------AC-------------------------TGA-------------------------AGAACTCAAGCCCCGAGAAAACTGAAGGG-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGC----------GCAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTTAAGCT------------------CC-GAG
gi|44253 : GAGAAAC-ACT-CTCCTATGAAGTCCGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GG-------------------------CTCAAGCT------------------C-------------------------CG-AG-AA-------------------------A----------------------------------------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCATGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44254 : GAGAAAA-ACT-CACCTCTGAAGTCCGTAA-------------------------AC-------------------------TGA-------------------------AG-------------------------GA-------------------------CTCAAGCT------------------C-------------------------AG-AG-AA----------------------------------------------------------A-------------------------A-------------------------C-------------------------TGA-------------------------AGT-------------------------GCTCAACCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGaa
gi|44255 : AGAAAA-CCT-CGCCTGTGAAGTCTGTAA-------------------------AC-------------------------TGA-------------------------AT-------------------------GA-------------------------CTCAGGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCACCTGT----------GAAGTCTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------TCTCAAGCT------------------CC-GAGAATAC--------------------------GTCGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGtgaa
gi|44256 : -CCT-CGCCAGTAAAGTCTGTAA-------------------------AC-------------------------TAA-------------------------AT-------------------------GA-------------------------CTCAGGCT------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCTGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------TCTCAAGGT------------------CC-GAGAATAC--------------------------GTCGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAaa
gi|44257 : TCGATAA-------------------------AC-------------------------TAA-------------------------AA-------------------------GG-------------------------CTCAAGCTTCGAGAAAAACTGTACGAC-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GATGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------GAG-------------------------ACTAAGGCT------------------CC-GAGAAaaa
gi|44237 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-GTGAAACC--------------------------CTCGCCTGTGAAGTCCATAAACTGAAGGGCTCAAGCTCCAAG
gi|44208 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAGGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-AGGAAAACTGAAGGGCTCAAATTCCGATAAAATCCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44206 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCGGT----------GAAGTCCATAA-------------------------A-------------------------CTGAAGAACTCACGCTCAGAGAAAACTGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCaa
gi|44209 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCTCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAAGCT------------------CC-AAGAAAACTGAAGGACTCTAGCTCCGAGAAAAC-CTCGCCTGTGAAGTCCATAAACTGAACGACTCAAGCTCCAAGaggaa
gi|44211 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAATCCATAATCTGAAGGACTCAAGCTACAAGAAAA-------------------------C-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGTGAAGTCCATAAACTGAAGGACTCAATCTCCaa
gi|44213 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------C-------------------------TGA-------------------------AGGAATCAAGCTAGGAGAAAACTGAAGTGCTCAAGCT------------------CC-GAGAAAAC--------------------------CACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAGatgaa
gi|44214 : ------------------C-------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GATGTCCATAA-------------------------A-------------------------C-------------------------TGAGAGACTAAGGCTCCGAGAAAACTGAAGG-------------------------GCTCAAGCT------------------CCGAAAAAAAC--------------------------CTCGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCTTCGAGaa
gi|44218 : ------------------C-------------------------CG-TG-AA-------------------------AA-CCTCGCTTGT----------GAAGTCGATAA-------------------------ATTGAACGATTCAAGCTCCGTGAAATC-------------------------TGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GATAAATC--------------------------CTCGCCTGTGAAGTTCATAAACTGAAGGAATCAAGCTCCGAGaa
gi|44251 : ------------------C-------------------------CG-AG-AA-------------------------TA-CATCGCCTGT----------GAAGTCCGTAA-------------------------A-------------------------C-------------------------TGA-------------------------AGG-------------------------ACTCAaa
gi|44252 : -------------------------CG-AG-AA-------------------------AA-CCTCGCCTGT----------GAAGTCCATAA-------------------------A-------------------------CTGAAGAACTCAAGCCCCGAGAAAACTGA-------------------------AGG-------------------------GCTCAAGCT------------------CC-GAGAAAAC--------------------------CTCGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCTCCGAG
gi|44257 : TCGATAA-------------------------A-------------------------C-------------------------TAA-------------------------AAG-------------------------GCTCAAGCTTCGAGAAAAACTGTACGACC-GAGAAAAC--------------------------CTCGCCTGTGATGTCCATAAACTGAGAGACTAAGGCTCCGAG
gi|44251 : ------------------CC-GAGAATAC--------------------------ATCGCCTGTGAAGTCCGTAAACTGAAGGACTCAaa
Alignments
lowQualScore : 1 0 2 555555555555555555 0 8 0 0 3333333333 1 33 0 1 1
lowQualScore : . . . .................. . . . . .......... . .. . . .
lowQualScore : 6 8 1 888888888888888888 8 8 8 4 4444444444 1 44 8 6 9
consensus : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
Reference ( family-475 ) : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCATAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
gi|44206 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATAAACTGAAGAACTCACGCT------------------CAGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCC
gi|44207 : CCGAGAAAA-CCT-CGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCC------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCTCTGAGaggaa
gi|44208 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCAGG-AAAAC---------------------------------TGAAGGGCTCAAATTCCGATAAAATCCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44209 : CCGAGAAAA-CCT-CTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCAAG-AAAAC---------------------------------TGAAGGACTCTAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAACGACTCAAGCTCCAAGaa
gi|44210 : CCGAGAATA-CAT-CGCTTGTGAAGTCCATAAATTGAAGGACACAAGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44211 : CCGAGAAAA-CCT-CGCCTGTGAAATCCATAATCTGAAGGACTCAAGCT------------------ACAAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAATCTCCaa
gi|44212 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGTG-AAACCCT-CGCCTGT----------GAAGTCCATAAACTGAAGGGCTCAAGCTCCAAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGatgaa
gi|44213 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCT------------------AGGAG-AAAAC---------T----------GAAGT--------------GCTCAAGCTCCGAGAAAA-CCACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44214 : CCGAGAAAA-CCT-CGCCTGTGATGTCCATAAACTGAGAGACTAAGGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAAAAAAACCTCGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCTTCGAGaa
gi|44215 : CCGAAAAAAACCT-CGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCT------------------TCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAAAAAA-CCTCGCCTGTGAGGTCCATGACCTGAAAGGCTCAAGCTCCGAGaa
gi|44216 : CCGAGAAAA-CCA-CGCCTGTGGAGTCCATAAACTGAAGGAATCAAGCT------------------CCGAG-A---------------------------------AAACTGAAGAACTCAAGCTCCGAGATAA-CCACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44217 : CCGATAAAATCCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCAGGT----------GAAGTCCATCAAGTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGaa
gi|44218 : CCGTGAAAA-CCT-CGCTTGTGAAGTCGATAAATTGAACGATTCAAGCT------------------CCG-----------------T----------GAAATC-------TGAAGGGCTCAAGCTCCGATAAAT-CCTCGCCTGTGAAGTTCATAAACTGAAGGAATCAAGCTCCGAGaa
gi|44219 : CCGAGAAAA-CCT-CGCAGGTGAAGTCCATCAAGTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCTaa
gi|44220 : CCGTGAAGA-CCC-CGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCT------------------CCGAG-AAAACTT-CTCCTGT----------GAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCAAGaggagaa
gi|44221 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAACCCA-TGCCTGT----------GAAGTACATAAACTGAAGGATTCGATCTCCGTGAAGA-CCCCGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCTCCGAGaa
gi|44222 : CCGAGAAAA-CCT-CGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAACTCT-CGCCTGT----------GAAGTCCATAAACTGAAGGATTTGATCTCCTTGAAAA-CCTCGCCTGTGAAGGCCATAAACTGAAGGACTCAAGCTGCGAGaa
gi|44223 : CCGAGAAAA-CCA-CGCATGTGCAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCGGT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAATA-CCTCGCCTGTGAAGTCAATAAACTGAACGACTCAAGCTCCGAGaa
gi|44224 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTAAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGTCTGT----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44225 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAATCT------------------CCATG-AAAACCT-CTCCTGT----------GAAG-CCGTAAACTGACGGCCTCAAGCTCTCAGAAAA-CCTCGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCTCCGAGaa
gi|44226 : CCGAGAAAC-TCT-CGCCTGTGAAGTCCATAAACTGAAGGATTTGATCT------------------CCTTG-AAAACCT-CGCCTGT----------GAAGGCCATAAACTGAAGGACTCAAGCTGCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44227 : CCGAGAAAA-CCT-CACCTGTGAAGTCTGTAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGAATA-CTTCGCCTATGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44228 : CCAAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-TAAATCTTCGCCTGT----------GAACTCCATAAACTGAAGGATTCGATCTGCTTGAAAA-CCTCGCCTGTGAAGTCGATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44229 : CCGAGAATA-CGT-CGCCTGTGATGTCAATAAACTGAAGGACTCGATCT------------------CCGAG-AATACCT-CGCCTGT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGAAAA-TCTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44230 : CCGAGAAAA-TCT-CTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCT------------------CCGAG-AATACGT-CGCTTAT----------GAAATCCATGAACTGAAGGACCCAAGCTCAGAGAAAC-ACTCTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGaa
gi|44231 : CCGAGAATA-CTT-CGCCTATGAAGTCCATCAACTGAAGGACTCGATCT------------------CCGAG-AATATAT-CGCCTTT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGAAAA-TCTTTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44232 : CCGAGAAAA-TCT-TTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCT------------------CCGAG-AATATAT-CGCTTAT----------GAAATCCATAAACTGAAGGACTCAAGCTCAGAGAAAA-ACTCACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCTCAGAGaa
gi|44233 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATCAACTGAAGGACTCGATCT------------------CCGAG-AATACCT-CGCCTGT----------GAAGTCAATAAACTGAACGACTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATAAACTGACGGTATCAAGCTCCGAGaa
gi|44234 : CCGAGAAAC-CCA-TGCCTGTGAAGTACATAAACTGAAGGATTCGATCT------------------CCGTG-AAGACCC-CGCCTGT----------GAAGTCTAAAAACTGAAGGACTCAATCTCCGAGAAAA-CTTCTCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44235 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTGAAGGTCTCAAGGT------------------CCGAG-AATACGT-CGCCTGC----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAAAATA-CGTCGCCTGTGAAATCCATAAACTGAAAGACTGGATCTCCGAGaa
gi|44236 : CCGAGTAAA-TCTTCGCCTGTGAACTCCATAAACTGAAGGATTCGATCT------------------GCTTG-AAAACCT-CGCCTGT----------GAAGTCGATAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44237 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGTG-AAACCCT-CGCCTGT----------GAAGTCCATAAACTGAAGGGCTCAAGCTCCAAGAAaa
gi|44238 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCT------------------CTGAG-AACACGT-CGCCTAT----------GAAGTCCATAAACTGAAGGACTCGATCTCCGAGAATA-CATCGCCTGTGAAGTCCGTAAACTGAAGGACTCA
gi|44239 : CCGAGAATA-CCT-CGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCT------------------CCGAG-AAAATCT-CTCCTGT----------GAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGAATA-CGTCGCTTATGAAATCCATGAACTGAAGGACCCAAGCTCAGAG
gi|44240 : CCGAAAATA-CGT-CGCCTGTGAAATCCATAAACTGAAAGACTGGATCT------------------CCGAG-AATACAT-CGCCTTT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGATAAAA-TCTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44241 : CTGAGAAAA-CCT-CGCCTGTGCAGTATTTAAACTAAATGACTCAGGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCTGTAAACTAAAGGTCTCAAGCTCCGAGAATA-CGTCGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGa
gi|44242 : CCGAGAAAA-CAT-CGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCT------------------CCGAG-AAAATCT-TTCCTGT----------GAAATCTGTAAACTGAAGGACTCAAGCTCCGAGAATA-CATCGCTTGTGAAGTCCATAAATTGAAGGACACAAGCTCCGAGaa
gi|44243 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAACGACTCAAGCT------------------CCAAG-AAAACCT-CTCCTCT----------GAAG-CCGTAAACTGACGGTCTCAAGCTCTGAGATTT-CCTCGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCTCCGAGaa
gi|44244 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAAACTGACGGTATCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GATGTCAATAAACTGAAGGACTCGATCTCCGAGAATA-CCTCGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44245 : CCGAGAAAA-CCT-CGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCT------------------CCGAGTAAAACCT-CGCCTGT----------GAAGTCCATAAACTTAAGGATTCGATCTCCGTGAAAA-CCTCGCTTGTGAAGTCGATAAATTGAACGATTCAAGCTCCGaa
gi|44246 : CCGAGAATA-CGT-CGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAAAA-CATCGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCTCCGAGtgaa
gi|44247 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACTT-CGCCTAT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAATA-TATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44248 : CCGAGAATA-CAT-CGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCT------------------CCGAT-AAAATCT-CTCCTGT----------GAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGACTA-GGTCGCTTATGAAATCCATAAACTAAAGGACTCAAGCTCAGAGaa
gi|44249 : CCGAGAATA-CGT-CGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAA-AATACGT-CGCCTGT----------GAAATCCATAAACTGAAAGACTGGATCTCCGAGAATA-CATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAaa
gi|44250 : CCGAGACTA-GGT-CGCTTATGAAATCCATAAACTAAAGGACTCAAGCT------------------CAGAG-AAAAACT-CACCTGTNNNNNNNNNNGAAG-CCGTAAACTAACGGTCTGAAGCTCTGAGAAAA-CCTCGCCTGTGCAGTATTTAAACTAAATGACTCAGGCTCCGAGtaa
gi|44251 : CCGAGAATA-CAT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAaa
gi|44252 : CGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCC------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCTCCGAG
gi|44253 : GAGAAAC-ACT-CTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCATGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44254 : GAGAAAA-ACT-CACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CAGAG-AAAAC---------T----------GAAGT--------------GCTCAACCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGaa
gi|44255 : AGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCT------------------CCGAG-AAAACCT-CACCTGT----------GAAGTCTGTAAACTGAAGGTCTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGtgaa
gi|44256 : -CCT-CGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCTGTAAACTGAAGGTCTCAAGGTCCGAGAATA-CGTCGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAaa
gi|44257 : TAAACTAAAAGGCTCAAGCTTCGAGAAAAACTGTACGACCGAG-AAAACCT-CGCCTGT----------GATGTCCATAAACTGAGAGACTAAGGCTCCGAGAAaaa
Alignments
lowQualScore : 1 0 2 555555555555555555 0 8 0 0 3333333333 1 66 1 1 1
lowQualScore : . . . .................. . . . . .......... . .. . . .
lowQualScore : 6 8 1 888888888888888888 8 8 8 4 4444444444 1 44 9 6 9
consensus : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
Reference ( family-475 ) : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
gi|44206 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATAAACTGAAGAACTCACGCT------------------CAGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCC
gi|44207 : CCGAGAAAA-CCT-CGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCC------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCTCTGAGaggaa
gi|44208 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCAGG-AAAAC---------------------------------TGAAGGGCTCAAATTCCGATAAAATCCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44209 : CCGAGAAAA-CCT-CTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCAAG-AAAAC---------------------------------TGAAGGACTCTAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAACGACTCAAGCTCCAAGaa
gi|44210 : CCGAGAATA-CAT-CGCTTGTGAAGTCCATAAATTGAAGGACACAAGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44211 : CCGAGAAAA-CCT-CGCCTGTGAAATCCATAATCTGAAGGACTCAAGCT------------------ACAAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAATCTCCaa
gi|44212 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGTG-AAACCCT-CGCCTGT----------GAAGTCCATAAACTGAAGGGCTCAAGCTCCAAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGatgaa
gi|44213 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCT------------------AGGAG-AAAAC---------T----------GAAGT--------------GCTCAAGCTCCGAGAAAA-CCACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44214 : CCGAGAAAA-CCT-CGCCTGTGATGTCCATAAACTGAGAGACTAAGGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAAAAAAACCTCGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCTTCGAGaa
gi|44215 : CCGAAAAAAACCT-CGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCT------------------TCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAAAAAA-CCTCGCCTGTGAGGTCCATGACCTGAAAGGCTCAAGCTCCGAGaa
gi|44216 : CCGAGAAAA-CCA-CGCCTGTGGAGTCCATAAACTGAAGGAATCAAGCT------------------CCGAG-A---------------------------------AAACTGAAGAACTCAAGCTCCGAGATAA-CCACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44217 : CCGATAAAATCCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCAGGT----------GAAGTCCATCAAGTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGaa
gi|44218 : CCGTGAAAA-CCT-CGCTTGTGAAGTCGATAAATTGAACGATTCAAGCT------------------CCG-----------------T----------GAAATC-------TGAAGGGCTCAAGCTCCGATAAAT-CCTCGCCTGTGAAGTTCATAAACTGAAGGAATCAAGCTCCGAGaa
gi|44219 : CCGAGAAAA-CCT-CGCAGGTGAAGTCCATCAAGTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCTaa
gi|44220 : CCGTGAAGA-CCC-CGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCT------------------CCGAG-AAAACTT-CTCCTGT----------GAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCAAGaggagaa
gi|44221 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAACCCA-TGCCTGT----------GAAGTACATAAACTGAAGGATTCGATCTCCGTGAAGA-CCCCGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCTCCGAGaa
gi|44222 : CCGAGAAAA-CCT-CGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAACTCT-CGCCTGT----------GAAGTCCATAAACTGAAGGATTTGATCTCCTTGAAAA-CCTCGCCTGTGAAGGCCATAAACTGAAGGACTCAAGCTGCGAGaa
gi|44223 : CCGAGAAAA-CCA-CGCATGTGCAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCGGT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAATA-CCTCGCCTGTGAAGTCAATAAACTGAACGACTCAAGCTCCGAGaa
gi|44224 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTAAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGTCTGT----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44225 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAATCT------------------CCATG-AAAACCT-CTCCTGT----------GAAG-CCGTAAACTGACGGCCTCAAGCTCTCAGAAAA-CCTCGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCTCCGAGaa
gi|44226 : CCGAGAAAC-TCT-CGCCTGTGAAGTCCATAAACTGAAGGATTTGATCT------------------CCTTG-AAAACCT-CGCCTGT----------GAAGGCCATAAACTGAAGGACTCAAGCTGCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44227 : CCGAGAAAA-CCT-CACCTGTGAAGTCTGTAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGAATA-CTTCGCCTATGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44228 : CCAAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-TAAATCTTCGCCTGT----------GAACTCCATAAACTGAAGGATTCGATCTGCTTGAAAA-CCTCGCCTGTGAAGTCGATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44229 : CCGAGAATA-CGT-CGCCTGTGATGTCAATAAACTGAAGGACTCGATCT------------------CCGAG-AATACCT-CGCCTGT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGAAAA-TCTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44230 : CCGAGAAAA-TCT-CTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCT------------------CCGAG-AATACGT-CGCTTAT----------GAAATCCATGAACTGAAGGACCCAAGCTCAGAGAAAC-ACTCTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGaa
gi|44231 : CCGAGAATA-CTT-CGCCTATGAAGTCCATCAACTGAAGGACTCGATCT------------------CCGAG-AATATAT-CGCCTTT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGAAAA-TCTTTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44232 : CCGAGAAAA-TCT-TTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCT------------------CCGAG-AATATAT-CGCTTAT----------GAAATCCATAAACTGAAGGACTCAAGCTCAGAGAAAA-ACTCACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCTCAGAGaa
gi|44233 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATCAACTGAAGGACTCGATCT------------------CCGAG-AATACCT-CGCCTGT----------GAAGTCAATAAACTGAACGACTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATAAACTGACGGTATCAAGCTCCGAGaa
gi|44234 : CCGAGAAAC-CCA-TGCCTGTGAAGTACATAAACTGAAGGATTCGATCT------------------CCGTG-AAGACCC-CGCCTGT----------GAAGTCTAAAAACTGAAGGACTCAATCTCCGAGAAAA-CTTCTCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44235 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTGAAGGTCTCAAGGT------------------CCGAG-AATACGT-CGCCTGC----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAAAATA-CGTCGCCTGTGAAATCCATAAACTGAAAGACTGGATCTCCGAGaa
gi|44236 : CCGAGTAAA-TCTTCGCCTGTGAACTCCATAAACTGAAGGATTCGATCT------------------GCTTG-AAAACCT-CGCCTGT----------GAAGTCGATAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44237 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGTG-AAACCCT-CGCCTGT----------GAAGTCCATAAACTGAAGGGCTCAAGCTCCAAGAAaa
gi|44238 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCT------------------CTGAG-AACACGT-CGCCTAT----------GAAGTCCATAAACTGAAGGACTCGATCTCCGAGAATA-CATCGCCTGTGAAGTCCGTAAACTGAAGGACTCA
gi|44239 : CCGAGAATA-CCT-CGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCT------------------CCGAG-AAAATCT-CTCCTGT----------GAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGAATA-CGTCGCTTATGAAATCCATGAACTGAAGGACCCAAGCTCAGAG
gi|44240 : CCGAAAATA-CGT-CGCCTGTGAAATCCATAAACTGAAAGACTGGATCT------------------CCGAG-AATACAT-CGCCTTT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGATAAAA-TCTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44241 : CTGAGAAAA-CCT-CGCCTGTGCAGTATTTAAACTAAATGACTCAGGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCTGTAAACTAAAGGTCTCAAGCTCCGAGAATA-CGTCGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGa
gi|44242 : CCGAGAAAA-CAT-CGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCT------------------CCGAG-AAAATCT-TTCCTGT----------GAAATCTGTAAACTGAAGGACTCAAGCTCCGAGAATA-CATCGCTTGTGAAGTCCATAAATTGAAGGACACAAGCTCCGAGaa
gi|44243 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAACGACTCAAGCT------------------CCAAG-AAAACCT-CTCCTCT----------GAAG-CCGTAAACTGACGGTCTCAAGCTCTGAGATTT-CCTCGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCTCCGAGaa
gi|44244 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAAACTGACGGTATCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GATGTCAATAAACTGAAGGACTCGATCTCCGAGAATA-CCTCGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44245 : CCGAGAAAA-CCT-CGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCT------------------CCGAGTAAAACCT-CGCCTGT----------GAAGTCCATAAACTTAAGGATTCGATCTCCGTGAAAA-CCTCGCTTGTGAAGTCGATAAATTGAACGATTCAAGCTCCGaa
gi|44246 : CCGAGAATA-CGT-CGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAAAA-CATCGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCTCCGAGtgaa
gi|44247 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACTT-CGCCTAT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAATA-TATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44248 : CCGAGAATA-CAT-CGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCT------------------CCGAT-AAAATCT-CTCCTGT----------GAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGACTA-GGTCGCTTATGAAATCCATAAACTAAAGGACTCAAGCTCAGAGaa
gi|44249 : CCGAGAATA-CGT-CGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAA-AATACGT-CGCCTGT----------GAAATCCATAAACTGAAAGACTGGATCTCCGAGAATA-CATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAaa
gi|44250 : CCGAGACTA-GGT-CGCTTATGAAATCCATAAACTAAAGGACTCAAGCT------------------CAGAG-AAAAACT-CACCTGTNNNNNNNNNNGAAG-CCGTAAACTAACGGTCTGAAGCTCTGAGAAAA-CCTCGCCTGTGCAGTATTTAAACTAAATGACTCAGGCTCCGAGtaa
gi|44251 : CCGAGAATA-CAT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAaa
gi|44252 : CGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCC------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCTCCGAG
gi|44253 : GAGAAAC-ACT-CTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCATGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44254 : GAGAAAA-ACT-CACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CAGAG-AAAAC---------T----------GAAGT--------------GCTCAACCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGaa
gi|44255 : AGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCT------------------CCGAG-AAAACCT-CACCTGT----------GAAGTCTGTAAACTGAAGGTCTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGtgaa
gi|44256 : -CCT-CGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCTGTAAACTGAAGGTCTCAAGGTCCGAGAATA-CGTCGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAaa
gi|44257 : TAAACTAAAAGGCTCAAGCTTCGAGAAAAACTGTACGACCGAG-AAAACCT-CGCCTGT----------GATGTCCATAAACTGAGAGACTAAGGCTCCGAGAAaaa
blockSeqs : A A TCGAGAAAAACTGTACGA C NNNNNNNNNN T CA G T A
blockSeqs : T A . C . T CA G A A
blockSeqs : . A . C . T CA A . A
blockSeqs : . A . T . T CG G . A
blockSeqs : . A . C . T CA G . A
blockSeqs : . A . C . T CA G . A
blockSeqs : . A . C . T CA G . A
blockSeqs : . A . G . T CA G . A
blockSeqs : . A . C . T CG G . A
blockSeqs : . A . C . T CA A . A
blockSeqs : . A . G . G CA A . A
blockSeqs : . A . C . T CA G . A
blockSeqs : . A . C . T TG G . A
blockSeqs : . A . G . A CA A . A
blockSeqs : . A . A . T TG A . A
blockSeqs : . A . A . A CA A . A
blockSeqs : . A . C . T AA A . A
blockSeqs : . G . C . T TA T . A
blockSeqs : . A . G . T CA C . G
blockSeqs : . A . C . T GA A . A
blockSeqs : . G . C . T CA T . A
blockSeqs : . A . G . T CA A . A
blockSeqs : . A . C . T TG G . G
blockSeqs : . G . A . T TG A . G
blockSeqs : . A . C . A TG G . G
blockSeqs : . G . C . T TG A . G
blockSeqs : . A . C . T CG A . A
blockSeqs : . A . G . T AA A . G
blockSeqs : . G . C . T CA T . A
blockSeqs : . A . G . T CA A . A
blockSeqs : . A . T . T CA G . G
blockSeqs : . A . C . T TG A . A
blockSeqs : . G . G . T CA A . G
blockSeqs : . A . C . T CG G . A
blockSeqs : . T . C . T TG T . A
blockSeqs : . G . C . T TG A . G
blockSeqs : . A . C . T CA T . G
blockSeqs : . A . . . . . A . A
blockSeqs : . A . . . . . A . G
blockSeqs : . A . . . . . A . G
blockSeqs : . A . . . . . A . A
blockSeqs : . G . . . . . A . G
blockSeqs : . A . . . . . A . T
blockSeqs : . A . . . . . T . A
blockSeqs : . G . . . . . G . A
blockSeqs : . A . . . . . G . A
blockSeqs : . G . . . . . G . A
blockSeqs : . G . . . . . T . A
blockSeqs : . G . . . . . T
blockSeqs : . G . . . . . A
blockSeqCons : CG
originalCons : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
finalCons : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
Alignments
lowQualScore : 1 0 2 555555555555555555 0 8 0 0 3333333333 1 66 1 1 1
lowQualScore : . . . .................. . . . . .......... . .. . . .
lowQualScore : 6 8 1 888888888888888888 8 8 8 4 4444444444 1 44 9 6 9
consensus : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
Reference ( family-475 ) : CCGAGAAAA-CCT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAG
gi|44206 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATAAACTGAAGAACTCACGCT------------------CAGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCC
gi|44207 : CCGAGAAAA-CCT-CGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCC------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCTCTGAGaggaa
gi|44208 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCAGG-AAAAC---------------------------------TGAAGGGCTCAAATTCCGATAAAATCCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44209 : CCGAGAAAA-CCT-CTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCAAG-AAAAC---------------------------------TGAAGGACTCTAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAACGACTCAAGCTCCAAGaa
gi|44210 : CCGAGAATA-CAT-CGCTTGTGAAGTCCATAAATTGAAGGACACAAGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44211 : CCGAGAAAA-CCT-CGCCTGTGAAATCCATAATCTGAAGGACTCAAGCT------------------ACAAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAATCTCCaa
gi|44212 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGTG-AAACCCT-CGCCTGT----------GAAGTCCATAAACTGAAGGGCTCAAGCTCCAAGAAAA-CCTCGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCTCCGAGatgaa
gi|44213 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCT------------------AGGAG-AAAAC---------T----------GAAGT--------------GCTCAAGCTCCGAGAAAA-CCACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44214 : CCGAGAAAA-CCT-CGCCTGTGATGTCCATAAACTGAGAGACTAAGGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAAAAAAACCTCGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCTTCGAGaa
gi|44215 : CCGAAAAAAACCT-CGCCTGTGAGGTCCATGACCTGAAGGGCTCAAGCT------------------TCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAAAAAA-CCTCGCCTGTGAGGTCCATGACCTGAAAGGCTCAAGCTCCGAGaa
gi|44216 : CCGAGAAAA-CCA-CGCCTGTGGAGTCCATAAACTGAAGGAATCAAGCT------------------CCGAG-A---------------------------------AAACTGAAGAACTCAAGCTCCGAGATAA-CCACGCATGTGCAGTCCATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44217 : CCGATAAAATCCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCAGGT----------GAAGTCCATCAAGTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCCTGTGAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGaa
gi|44218 : CCGTGAAAA-CCT-CGCTTGTGAAGTCGATAAATTGAACGATTCAAGCT------------------CCG-----------------T----------GAAATC-------TGAAGGGCTCAAGCTCCGATAAAT-CCTCGCCTGTGAAGTTCATAAACTGAAGGAATCAAGCTCCGAGaa
gi|44219 : CCGAGAAAA-CCT-CGCAGGTGAAGTCCATCAAGTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAGGTCCATGAACTGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGAATCAAGCTaa
gi|44220 : CCGTGAAGA-CCC-CGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCT------------------CCGAG-AAAACTT-CTCCTGT----------GAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCTCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCAAGaggagaa
gi|44221 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAACCCA-TGCCTGT----------GAAGTACATAAACTGAAGGATTCGATCTCCGTGAAGA-CCCCGCCTGTGAAGTCTAAAAACTGAAGGACTCAATCTCCGAGaa
gi|44222 : CCGAGAAAA-CCT-CGCCTGTAAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAACTCT-CGCCTGT----------GAAGTCCATAAACTGAAGGATTTGATCTCCTTGAAAA-CCTCGCCTGTGAAGGCCATAAACTGAAGGACTCAAGCTGCGAGaa
gi|44223 : CCGAGAAAA-CCA-CGCATGTGCAGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-AAAACCT-CGCCGGT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAATA-CCTCGCCTGTGAAGTCAATAAACTGAACGACTCAAGCTCCGAGaa
gi|44224 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTAAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGTCTGT----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44225 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAATCT------------------CCATG-AAAACCT-CTCCTGT----------GAAG-CCGTAAACTGACGGCCTCAAGCTCTCAGAAAA-CCTCGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCTCCGAGaa
gi|44226 : CCGAGAAAC-TCT-CGCCTGTGAAGTCCATAAACTGAAGGATTTGATCT------------------CCTTG-AAAACCT-CGCCTGT----------GAAGGCCATAAACTGAAGGACTCAAGCTGCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44227 : CCGAGAAAA-CCT-CACCTGTGAAGTCTGTAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGAATA-CTTCGCCTATGAAGTCCATCAACTGAAGGACTCGATCTCCGAGaa
gi|44228 : CCAAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGACTCAAGCT------------------CCGAG-TAAATCTTCGCCTGT----------GAACTCCATAAACTGAAGGATTCGATCTGCTTGAAAA-CCTCGCCTGTGAAGTCGATAAACTGAAGGACTCAAGCTCCGAGaa
gi|44229 : CCGAGAATA-CGT-CGCCTGTGATGTCAATAAACTGAAGGACTCGATCT------------------CCGAG-AATACCT-CGCCTGT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGAAAA-TCTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44230 : CCGAGAAAA-TCT-CTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCT------------------CCGAG-AATACGT-CGCTTAT----------GAAATCCATGAACTGAAGGACCCAAGCTCAGAGAAAC-ACTCTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCTCCGAGaa
gi|44231 : CCGAGAATA-CTT-CGCCTATGAAGTCCATCAACTGAAGGACTCGATCT------------------CCGAG-AATATAT-CGCCTTT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGAAAA-TCTTTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44232 : CCGAGAAAA-TCT-TTCCTATGAAGTCTGTAAACTGAAGGACTCAAGCT------------------CCGAG-AATATAT-CGCTTAT----------GAAATCCATAAACTGAAGGACTCAAGCTCAGAGAAAA-ACTCACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCTCAGAGaa
gi|44233 : CCGAGAAAA-CCT-CGCCGGTGAAGTCCATCAACTGAAGGACTCGATCT------------------CCGAG-AATACCT-CGCCTGT----------GAAGTCAATAAACTGAACGACTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATAAACTGACGGTATCAAGCTCCGAGaa
gi|44234 : CCGAGAAAC-CCA-TGCCTGTGAAGTACATAAACTGAAGGATTCGATCT------------------CCGTG-AAGACCC-CGCCTGT----------GAAGTCTAAAAACTGAAGGACTCAATCTCCGAGAAAA-CTTCTCCTGTGAAGTCCGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44235 : CCGAGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTGAAGGTCTCAAGGT------------------CCGAG-AATACGT-CGCCTGC----------GAAGTCCATAAACTGAAGGTCTCAAGCTCCGAAAATA-CGTCGCCTGTGAAATCCATAAACTGAAAGACTGGATCTCCGAGaa
gi|44236 : CCGAGTAAA-TCTTCGCCTGTGAACTCCATAAACTGAAGGATTCGATCT------------------GCTTG-AAAACCT-CGCCTGT----------GAAGTCGATAAACTGAAGGACTCAAGCTCCGAGAAAA-CCTCGCTTGTGAAGTCTATAAACTGAAGAACTCAAGCCCCGAGaa
gi|44237 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCT------------------CCGTG-AAACCCT-CGCCTGT----------GAAGTCCATAAACTGAAGGGCTCAAGCTCCAAGAAaa
gi|44238 : CCGAGAAAA-CCT-CGCCTGTGAGGTCCATAAACTGAAGGTCTCAGGCT------------------CTGAG-AACACGT-CGCCTAT----------GAAGTCCATAAACTGAAGGACTCGATCTCCGAGAATA-CATCGCCTGTGAAGTCCGTAAACTGAAGGACTCA
gi|44239 : CCGAGAATA-CCT-CGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCT------------------CCGAG-AAAATCT-CTCCTGT----------GAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGAATA-CGTCGCTTATGAAATCCATGAACTGAAGGACCCAAGCTCAGAG
gi|44240 : CCGAAAATA-CGT-CGCCTGTGAAATCCATAAACTGAAAGACTGGATCT------------------CCGAG-AATACAT-CGCCTTT----------GAAGACTGTAAACTGAAGTGCTCAAGCTCCGATAAAA-TCTCTCCTGTGAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGaa
gi|44241 : CTGAGAAAA-CCT-CGCCTGTGCAGTATTTAAACTAAATGACTCAGGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCTGTAAACTAAAGGTCTCAAGCTCCGAGAATA-CGTCGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGa
gi|44242 : CCGAGAAAA-CAT-CGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCT------------------CCGAG-AAAATCT-TTCCTGT----------GAAATCTGTAAACTGAAGGACTCAAGCTCCGAGAATA-CATCGCTTGTGAAGTCCATAAATTGAAGGACACAAGCTCCGAGaa
gi|44243 : CCGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAACGACTCAAGCT------------------CCAAG-AAAACCT-CTCCTCT----------GAAG-CCGTAAACTGACGGTCTCAAGCTCTGAGATTT-CCTCGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCTCCGAGaa
gi|44244 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAAACTGACGGTATCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GATGTCAATAAACTGAAGGACTCGATCTCCGAGAATA-CCTCGCCTGTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44245 : CCGAGAAAA-CCT-CGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCT------------------CCGAGTAAAACCT-CGCCTGT----------GAAGTCCATAAACTTAAGGATTCGATCTCCGTGAAAA-CCTCGCTTGTGAAGTCGATAAATTGAACGATTCAAGCTCCGaa
gi|44246 : CCGAGAATA-CGT-CGTCTGTGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACGT-CGCCTGT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAAAA-CATCGCCTTTGAAGACTGTACACTGAAGTGCTCAAGCTCCGAGtgaa
gi|44247 : CCGAGAATA-CGT-CGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAG-AATACTT-CGCCTAT----------GAAGTCCATCAACTGAAGGACTCGATCTCCGAGAATA-TATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAGaa
gi|44248 : CCGAGAATA-CAT-CGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCT------------------CCGAT-AAAATCT-CTCCTGT----------GAAGTCTGTAAACTGAAGGACTCAAGCTCCGAGACTA-GGTCGCTTATGAAATCCATAAACTAAAGGACTCAAGCTCAGAGaa
gi|44249 : CCGAGAATA-CGT-CGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCT------------------CCGAA-AATACGT-CGCCTGT----------GAAATCCATAAACTGAAAGACTGGATCTCCGAGAATA-CATCGCCTTTGAAGACTGTAAACTGAAGTGCTCAAGCTCCGAaa
gi|44250 : CCGAGACTA-GGT-CGCTTATGAAATCCATAAACTAAAGGACTCAAGCT------------------CAGAG-AAAAACT-CACCTGTNNNNNNNNNNGAAG-CCGTAAACTAACGGTCTGAAGCTCTGAGAAAA-CCTCGCCTGTGCAGTATTTAAACTAAATGACTCAGGCTCCGAGtaa
gi|44251 : CCGAGAATA-CAT-CGCCTGTGAAGTCCGTAAACTGAAGGACTCAaa
gi|44252 : CGAGAAAA-CCT-CGCCTGTGAAGTCCATAAACTGAAGAACTCAAGCC------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCAAGCTCCGAGAAAA-CCTCGCCTGCGCAGTCCATAAACTGAAGGACTTAAGCTCCGAG
gi|44253 : GAGAAAC-ACT-CTCCTATGAAGTCCGTAAACTGAAGGGCTCAAGCT------------------CCGAG-AAAAC---------------------------------TGAAGGGCTCATGCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGAG
gi|44254 : GAGAAAA-ACT-CACCTCTGAAGTCCGTAAACTGAAGGACTCAAGCT------------------CAGAG-AAAAC---------T----------GAAGT--------------GCTCAACCTCCGAGAAAA-CCTCGCCTGTGAAGTCCATAAACTGAAGGACTCAAGCTCCGaa
gi|44255 : AGAAAA-CCT-CGCCTGTGAAGTCTGTAAACTGAATGACTCAGGCT------------------CCGAG-AAAACCT-CACCTGT----------GAAGTCTGTAAACTGAAGGTCTCAAGCTCCGAGAATA-CGTCGCCTGTGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAGtgaa
gi|44256 : -CCT-CGCCAGTAAAGTCTGTAAACTAAATGACTCAGGCT------------------CCGAG-AAAACCT-CGCCTGT----------GAAGTCTGTAAACTGAAGGTCTCAAGGTCCGAGAATA-CGTCGCCTGCGAAGTCCATAAACTGAAGGTCTCAAGCTCCGAaa
gi|44257 : TAAACTAAAAGGCTCAAGCTTCGAGAAAAACTGTACGACCGAG-AAAACCT-CGCCTGT----------GATGTCCATAAACTGAGAGACTAAGGCTCCGAGAAaaa