lowQualScore : 222 11111 1 1
lowQualScore : 5 1 1 4 3 7 2 5 111 222 33333 2 77777 88 3 888888 1 1 0 0 8 4 4 222222 1 66 1 7 2 88888888 1 33 3 1 4 1 22 22 5 22 4444 22 44444 1 333 5
lowQualScore : . . . . . . . . ... ... ..... . ..... .. . ...... . . . . . . . ...... . .. . . . ........ . .. . . . . .. .. . .. .... .. ..... . ... .
lowQualScore : 3 3 3 0 8 3 4 1 000 222 00000 8 66666 33 6 777777 2 0 9 9 2 5 7 666666 0 22 0 0 2 33333333 4 55 0 5 4 5 00 11 6 33 0000 66 88888 9 333 0
consensus : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTCTNATATTTCG-AANTTCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-C-GGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
Reference ( gi|65306 ) : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTCTGATATTTCG-AATTTGTGGTTATCTCAAA---TT-----TGAAGTGC---GGTCCCG--TTTTTT-CC----CTTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAAGTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-C-GGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGCTACAAACAC
gi|65305 : ATACAGTTGATA-CT-CAC-AA-AC-TCGAACTCTGATATTTCG-AATTTCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-ATTT-C-GGTCCC--------TCCATCCTAAAATCAAT-TAATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACT--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCCGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65304 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTCTGATATTTCG-AATTCCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCATGATATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-G-GGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCATC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TCATG--TGTCTGTACTGTCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65307 : ATACAGTTGACA-CT-CAC-CA-AC-TCGAACTCTGATATTTCG-AATTTCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-TC----CCTTC-TATTTCTATATTCATT-A-ACTCCTGATATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTACGAATCTGT-TTTT-G-GGTCCC--------TCCATTCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAAGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TTGTG--TGTCTGTACTGGCAGGTA-----A-GGTAATTGTGTCATC---AAATTGTTAAGATACAAACAC
gi|65308 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTCTGATATTTCG-AATTTCCGGTTATCTCAAA---TT-----TGAAGTTT---GGTCCCG--TTTTTTTCC----CCTTC-TGTTTCTATATTAAGA-A-ACTCCTGATATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-C-ATTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT---A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTTGAAGGTGATAATTGATGATCCCA--TACCTGTAATTTATCTCT----TCATG--TGTCTGTCCTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65309 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTCTGATATTTCG-AATTTCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-CC----CCTTC-TATTTCTTTATTAATT-A-ACTCCTGATATATCAAATTCCAG-TG-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-G-GGTCCC--------TTCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65311 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTCTGATATTTCG-AATTTCCGGTTATCTCAAA---TT-----TGAAGTTT---GTTCCCG--TTTTTC-CC----CTT-C-TATATCTATATTAATT-A-ACTCCTGATATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATGT-GAATCTGT-TTTT-C-GGTCCC--------TCCATCTTAAAATCAAT-TGATTTCTCACTCGTTATTT----------T-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TATCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAACTGTGTCATC---AAATTGTTATAATACAAACAC
gi|65310 : ATACAGTTGTTA-CT-CAA-CA-AT-TCGAACTCTTTTATTTCG-AAATTCCGGTTATCTCAAA---TT-----TGAAATTC---GGTCCCG--TTTTTT-CT----CCTTC-TATTTCTATATTAACT-A-GCCCCGGATATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-C-GGTCCC--------TCCATATTAAAATCTAT-TGATTTTTCACTCGTTATTTCGAT-T-TTTT-T-A-ACACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACTTGTATATTATTGCT----TCATG--TATCTGTACTGGCAGGCA-----A-GTTAAATGGGTCATC---AAATTGTTTTGATACAAACAC
gi|65312 : ATGCAGTTGATAGCA-TACTCA-AC-TCGAACTCTTATATTTCG-AAATTTCAGTTATCTCAAA---TT-----TGAAATTC---AGTCCCG--TTTTTTTCC----CCTTC-TATTTCTATATTAATT-G-ACTCCTGGTATAGCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-C-GGTCCC----------------AAAATATTT-TGATTTCCCACTCGTTATTTCGA-------T-T------------GTGAAAA--TGAAAGGCAAACCGCCTAAGCTGATATTT
gi|65313 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTCTTATATTTCG-AAATTCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-CC----CCTTC-TGTTTCTATATTAATT-T-ACTCCTGATATAcatg
gi|65314 : ATACAGTTGATA-CT-CGC-CA-AC-TCGAACTGTTATATTTCG-AAATTCCTGTTATCTAAAA---TT-----TGAAGTTC---GGTCTCG--TTTTTC-CC----CCTTC-TATTTCTATATCAATT-A-ACTCCTGATATATCAAATT--AG-TA-
gi|65315 : ATACAGCTGATA-CT-CAC-TA-AC-TCGAACTCTTATATTTTG-AAATTCCTGTTATCTCAAA---TT-----TGAATTTC---AGTCCTG--TTTTTT-CC----CCTTC-TATTTATATATTA
gi|65316 : ATACAGT--ATAACT-T-C-CATATATCGAACTTCAATATATCG-AATTTCTCGGTATATCGAA---CT-----T---TTTCTCAAGTCCCAACTTTTTT-CC------TTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT--A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65317 : ATACAGT--ATAACT-T-C-CATATATCGAACTTCAATATATCG-AATTTCTCGGTATATCGAA---CT-----T---TTTCTCAAGTCCCAACTTTTTT-CC------TTC-TAAATCTATATGAAAA-A-AACGCAAATATATCGAAGTT--A-TACATATCGAATTT------TTCAG-TATATCGAA---GTATTTT-C-
gi|65318 : TACAGTTGATA-CT-CAC-CA-AC-GAAAACTCTGATATTTCG-AATTCCAGGTTATCTCAAA---TT-----TGAAGTTC---GATCCCG--TTTTTT-CC----CCTTC-TATTTCTATATTAACT-A-ACTCCTGATATATCAAATTCCAG-TA-AT-TCCAATTA------TTCAC-TATTTCGAATCTGT-TTTT-G-GGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TAGTG--TGTCTGTACTGGCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACACacgaccc
gi|65319 : TACAGTTGATA-CT-CAC-CA-AC-TCGAACTCTGATATTTCG-AATTTCCGGTTATCTCAAA---TT-----TGAAGTTC---GGTCCCG--TTTTTT-TC----CCTTC-TGTTTCTATATTAATT-A-ACTCCTGATATATCAAATTCCAG-TA-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-G-GGTCCC--------TTCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATATAAACAC
gi|65321 : TACAGTTGATA-CT-CAC-CA-AC-TCAAACTCTTATATTTCGTAATTC-CGGTTATCTCAAA---TT-----TGAAGTTT---GGTCCTG--TTTTTT-CC----CTT-C-TATTTCTATATTAATT-A-ACCCCTGTTATATCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATCTGT-TCTA-A-GGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCTCTCGTTACTTCGA--A-TTTT-T-CTTCACC--GCATGAAGA--TTAAAGGCATACTGTCGAAGGTGATAATTGCTGATGCCA--TACCTGTAACTTATGACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65320 : TACAGTTGTTA-CT-CAC-TA-AC-TCGAACTCTTTTATTTCG-AAATTCCGGTTATCTCAAA---TT-----TGAAATTC---GGTCCCG--TTTTTT-CT----CCTTC-TATTTCTGTATTAATT-A-ACTCCGGATATATCAAATTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAATTCGT-TCTT-C-GGTCCC--------TCCATATTAAAATATAT-TGATTTCTCACTCGATATTTCGA--ATTTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGACCCCA--TACCTGTAATTAATCGCT----TCATG--TATCTGTAC-----------------TTAATTGGGCCATC---AAATTGTTATGATACAAACAC
gi|65323 : TACAGTTGTTA-CT-CAC-CA-AC-TCGAACTCTTTTATTTCG-AAATTCCTGTTATCTCAAA---TT-----TGAAATTC---TGCCCCG--TTTTTT-CT----CCTTC-TATTTCTACATTAATT-A-ACTCCGAATATATCAAATTCCAG-AT-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-C-GGTCCC--------TCCATATTTAAATCTAT-TAATTACTCACTCGTTATCTCGATTT-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCACCGAAGGTGATAATTACTGAT-CCA--TACCTGTAATTTATCACT----TCATG--TATCTGTACAGGCAGGTA-----A-ATTAATTGGGTCATC---AAATTGTTATGATA
gi|65324 : TACAATTGTTA-CT-CAC-CA-AC-TC----TTT--TATTTCA-AAATTCCGGTTATCTCAAA---TT-----TGAAATTC---GGTCCCG--TTTTTT----------------TTCTATATTAATT-A-ACTCCGGACATATCAAATTCAAG-AA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TATT-C-GGTACC--------TCCATATTAAAATCTAT-TGATTTCTCAATCGTTATTTCGA--A-TTTTTT-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAAATGATAATTGCTGTTCCCA--TACCTATAATTGATCACT----TCATT--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65322 : TACAGTTGATA-CT---------------ACTCTGATATTTCG-AAATTCCGGTTATCTCAAA---TT-----TGAAGTTT---GGTCCCG--TTTTTT-TC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAATTCCAG-TT-AT-TTGAATTA------TTCAC-TATTTCAAATCTGT-TTTG-C-GGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACCATGCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCATGTGTCTGTA
gi|65325 : TACAGTTGATA-AT-CGC-TA-AC-TCAAACTCTTATATTTCG-AAATTCCTGTTATCTCAAA---TT-----GGAAGTTT---GGTCACG--TTTTTT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCTTGATATATCAAATTCCAG-TA-AC-TTGAATTA------TTCAC-TATTTTAAAT-----------------C--------TCCATCCTAAAATCTAT-TGATTTCTCACTTGTTATTTCGG--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACAACTGAAGGTGATAATTGCTGATCTCA--TACCTATCATc
gi|65326 : TAAAATTGGTA-CT-CAC-CA-AC-TCGAACTTTTTTATTTCG-AAATTCCGGTTATCTCAAA---TT-----TGAAATTC---GGTCCGG--TTTTTT-CT----CCTTC-TGTTTCTATATTAATT-T-ACTCTGGATATATCAAAGTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATTCGT-TCTT-T-GGTCCC--------GCAGTATTAAAATCTAT-TGATTTCTTACTCGTTATTTCGA--ATTTTT-T-A-TCACC--G
gi|65327 : TACAGTCGAAA-CT-CAC-CA-AC-TCGAACACGCATATCTCA-AATTTCCTG--ATCTTAAA---GT-----TGAAATTC---AATCTCG--TTTTTTTCC----CCTTC-TATTTCTATATAAATT-A-ACTTTGGTTATCTCAAATTTCAT-TA-AT-ATGAATTA------TTCAC-T-TTTCGAACCAAT-TCTG-C-AGTCCC--------GACAACACAAACTCAAT-TGATTTCT--CTTGTTATGCTGA--A-TTTT-T-A-AGACC--ACTTTAAGA--TGAAAGGCAAGCTGCCAAAGGTAA-AA---------CCA--AACCTGTAATTTATTACTCTGATCATGACTGTCCATATCAACAGGTACCGGTATGTTAATTGTGTCACT---GAATTGTTATGATGCAAACAC
gi|65328 : TACAGCTGATA-CT-CAC-CA-AC-TCAAACTCTTATATTTCA-AAATTTCGGTTATCTCAAATTTTT-----TGACATGT---G---CTA--TTTTT--------CGTCT-TATTTTT-TATT
gi|65329 : TACAGTTGATA-CT-CGC-TG-AC-TCGAACTCTTATATTTCG-AAACTCCTGTTATCTCAAA---TT-----
gi|65330 : TACAGTTGATA-CT-CGC-TA-AC-TCTAACTCTTATATTTCG-AAATT
gi|65331 : TACAGT--ATAACT-T-C-CATACATCAAACTTCAATATATCG-AATTTCTCGGTATATCAAA---TTTTTTCTAAA--------GTCCCAACTTTTTT-CC------TTC-TAAATCTATATGGAAA-A-AACACAAATATATCGAAGTT--A-TACATATCGAATTT------TTCAG-TATATCAAA---GT-TTTT-cctgt
gi|65332 : ACTGTTGATA-CT-CTC-CA-AC-TCAAACTCTTATATTTTGGAATTCCTG-TCATCTCAA----TT-----TGAAATTC---AGTCGCA--TTTTTT-CCTTTTCTTTC-TATTAACATATTAATT-A-ACTCCTGATATAGCAAATTCCAG-GA-AT-GCCAATTA------TTCAC-AATTTCCAATCTGT-TCTG-T-AATCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTC-TTATTTCAA--A-TTTT-T-A-TCAAC--GCATGAAGA--TGAAAGGCAAACCATCGAAGGTAATAATTTTTGATCCCA--TACCTGTAATTTATCACT----TCATA--TGCCCGTACTGGCAGGTA-----A-GAGAATTGTGTCATA---AAATTGTTATGATACAAACAC
gi|65333 : AGTCAAAA-CT-CAC-CA-AT-TCGAACACTCATATTTCA-AA---------ATTTCAA-----------TAAA----------CCCG--TTTTTC-CCT---CCTTT-TATTTCTAT-TTAATTTA-ACTCCTGATATATCAAATTCCAT-TC-AG-TTGAATTG------TTAAC-CAATACG-ACCTTT-TCTC-T-GGTCCC--------TGCAGCACAACTTCCAC-TGATTTCTCACTCATTATGTCGA--T-TTTT-TCA-AGAGT--GCATGAAGA--TGAAGTGCAAGTCGATGTAGGTTGTAATTGGTGAAACCA--TACCTGT-ATTAATC-C--------TG--TGTCTCTACTGACAAATA-----A-GTTTATTGTGTCATCTTGGAATGGTTAT
gi|65334 : TGATA-TTATAC----AG-TCGGACACGCATATCTCA-AAAGTCCTGTTATCTCAAA---GT-----TGAACTTC---GGTCCCG--TTTTTT-CC----CCTTC-TATTTCTATATAAATT-T-ACTCCTT-TATCTCAAATTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAACCATT-TCTC-C-GGCACC--------GACAACATCAATTCATT-TGATTTCTCACTCGTTATGTTGA--A-TGTT-A-A-GGACC--TCGTGAAGA--TAAAAGGCAGTCCGCCGAAGGTCGTTATTGGTGagtaa
gi|65335 : -TCGAACTTCAATATATCG-AATTTCTCGGTATATCGAA---CT-----T---TTTCTCAAGTCCCAACTTTTTT-CC------TTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT--A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65336 : -TTGAACTTCAATATATCG-AATTTCTCGGTATATCAAA---CT-----T---TTTCTCAAGTCCCAACTTTTTT-CC------TTC-TAAATCTATATGGAAA-A-ACTGCAAATATATTGAAGTT--A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65337 : ATATCTCA-AAAGTCCTGTTATCTCAAA---GT-----TGAAGTTC---GGTCCCG--TTTTTT-CC----CCTTCTTTTTTTTATAT
gi|65338 : -----TAAAATTT---GGTCCTA--TTTTTT-CT----CCTTC-TATTTCTATTTTAATT-A-ACTCCGGATGTATCAAATTCCAG-TA-AT-TCGAATTACCGGTATTCAC-TATTTCGAATTCGT-TCTT-C-GGTCCC--------TCCATATTAAAATCTAT-TTATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-ACACC--GCGTGAAGA--TGAAAGGGAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65339 : C---GATCCTG--TTTTTT-CA----CCTTC-TATTTCTATATTAATA-A-ACTCCTGATATGTAAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-T-GGTCCC--------TCCATTCTAAAATCTGT-TGATTTCCCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--ACGTGAAGA--TGAAAGGCAAACCGCCAAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65340 : ttATATTAATT-A-ACTCCTGATATACCAAATTCCAG-TA-AT-TCGAATTA------TTCAC-TACTTCGAATCTGT-TTTT-C-CGTCCC--------TCCATCCTAAAATCTAT-TGATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTTATCCCA--TACCTGTAATTTATCGCT----TCA--------TGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTCATGATACAAACAC
gi|65345 : AATT-ACACTCCTGATAAATCAAACTTCGGATA-TT-TCGAATTA------TT
gi|65347 : actcgttatttcgaattccgtgggaccgtaaaAATA-G-ACTCCTGATAAATCGAACTTCGG-T-------------------------TATTTCGAAT-TAT-TTTTAC-GGTCCC--------ttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65344 : actcgttatttcaaattccgtAATA-G-ACTCCTGATAAATCGAACTTCGG-T-------------------------TATTTCGAAT-TAT-TTTTAC-GGTCCC--------tttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65351 : actcgttatttcgaattccatAATA-G-ACTCCTGATAAATCGAACTTCGGATA-TT-TCGAATTA------TTtttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65355 : actcgttatttagaattccttgggaccgtaaaAATA-G-ACTCCTGATAAATCGATCTTCAGATA-TT-TCGAATTA------TTtactttttaccgttaccccacccacttcataaatcgttgaaaatatacatattgtacatataaatac
gi|65353 : actcgttatttcgagtttcgtgggactgtaaaAATC-G-ACTCCTGATAAATAGAATTCCGGTTT-AT-TCAAATTA------TTtttgttcaattttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65316 : actcgttatttcaaattccatgggaccgtaaaT-A-ACTTCC-ATATATCGAACTTCAA-TA-TA-TCGAATTT------CTCGG-TATATCGAA-CTTT-TTCT-CAAGTCCCAACTTTTTTCC-TTCT-AAATCTAT-ttcgtgcaattttttattgttaccccatccacttcataaatcgttaagaatataattatgggtacatgtaaatac
gi|65317 : atacagtaT-A-ACTTCC-ATATATCGAACTTCAA-TA-TA-TCGAATTT------CTCGG-TATATCGAA-CTTT-TTCT-CAAGTCCCAACTTTTTTCC-TTCT-AAATCTATATGAatggaaaaaccgcaaatatatcgaagttatacatatcgaatttttcagtatatcgaagttttt
gi|65346 : atacagta-A-ACTCCTGATAAATCGAACTTCGGATA-TT-TCGAATTA------TTaaaaaacgcaaatatatcgaagttatacatatcgaatttttcagtatatcgaagtattttcacgaccc
gi|65341 : actcgttatttcgaattccgtgggaccgtaaa-ACTCCTGATATATCAAATTCCAG-TA-AT-TCAAATTA------TTCAC-TATTTTGAATC---------C-GGTCCC--------TCAATCCTTATATCTAT-TGATTTCTCACTCGTTATTTC-A--A-TTTT-T-A-TCACC--GCGTGAAGAGATGAAAGGCAAACTGTCAAAGGTGATAATTAATGATCCCA--TACCTGTAATTTATCAC-------------------ACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACACttttttgttcaacattttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65350 : -ACTCCTGATAAATCGAAGTCCGGATA-TT-TCGAATTA------TT
gi|65349 : actcgttatttcgaattctgtgggaccgtaaa-ACTCCTGATAAATCGAACTTCGGATA-TT-TCGAATTA------TTctacctttgtgcatcttttcaccgttacccaacccactttataaatcattgataagatatgtgtacatgtaaatac
gi|65352 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATA-ATTGAACTTCGGATA-TT-TCGAATTA------TTctatgtttgttcaacttttttccgttaccccacccacttcataaatcgttgaaaatatacatgatgtacctataaatac
gi|65354 : actcgttatttcgaaatccgtgggaccgtaaaTCCAGATA-AA-TTGAACT--------TCAGATATTTCGAAT-TAT-TTTTAC-GGTCCC--------gtatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatggtgtacatataaatac
gi|65342 : actctttatttcgaattccgtTA------TTTA---AATTAGAATCTTT-TTTC-T-CGTTCT--------TGCAACACAACTTTTAT-TGATTTCTCACTCATAATGTTG---A-TTTT-T-A-AGATG--ATGTGATGA--TAGAAGATAAGCCAGCGGAGGTTAT-ATTGGTGAAACCA--TACCTGTTATTTgtcctaattttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65350 : -TATTTCGAAT-TAT-TTTTAC-GGTCCC--------
gi|65345 : actcgttatttcgaattctgt-TATTTCGAAT-TAT-TTTTAC-GGTCCC--------tccggacttcgatttatcaggagtctacctttgtgcatcttttcaccgttacccaacccactttataaatcattgataagatatgtgtacatgtaaatac
gi|65346 : actcgttatttcgaattccgt-TATTTCGAAT-TAT-TTTTAC-GGTCCC--------tccgaagtttgatttatcaggagtgtaattttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65351 : actcgttatttcgaattccgt-TATTTCGAAT-TAT-TTTTAC-GGTCCC--------tccgaagttcgatttatcaggagttttttttgttcaacattttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65343 : actcgttatttagaattccttAT-TGATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-TCACT--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTAGCAGTTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACACtccgaagttcgatttatcaggagtctatttactttttaccgttaccccacccacttcataaatcgttgaaaatatacatattgtacatataaatac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|65348 ): ACTCGTTATTTCGAATTCCGTGGGACCTTGAAAATAATTCGAAATATCCGAAGTTCGATTAATCAGGAGTCTATGTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCATAAATCGTTGAAAATATACATGTTATACCTATAAATAC
Alignments
lowQualScore : 1
lowQualScore : 5 1 1 3 3 2 2 1 5 2 333 999 2222 2 1 3333 1 1 0 0 4 0 0 4 4 222222 1 1 1 1 33 2 1 4 1 22 22 0 5 22 3333 22 44444 1 333
lowQualScore : . . . . . . . . . . ... ... .... . . .... . . . . . . . . . ...... . . . . .. . . . . .. .. . . .. .... .. ..... . ...
lowQualScore : 2 3 3 9 6 3 1 0 6 7 999 777 4444 4 2 7777 2 0 9 2 5 5 9 5 7 666666 2 2 2 2 44 9 4 3 4 00 00 1 8 22 9999 55 55555 8 222
consensus : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
Reference ( family-474 ) : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65304 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTCC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCATGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCATC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TCATG--TGTCTGTACTGTCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65305 : ATACAGTTGATA-CT-CAC-AA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-ATTT-CGGTCCCTCCATCCTAAAATCAATTAATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACT--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCCGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65306 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTG-TGGTTATCTCAAATTTGAAGTG---C---G----GTCCCGTTTT-TT-CC----CTTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-GTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGCTACAAACAC
gi|65307 : ATACAGTTGACA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-TC----CCTTC-TATTTCTATATTCATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTACGAATCTGT-TTTT-GGGTCCCTCCATTCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAAGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TTGTG--TGTCTGTACTGGCAGGTA-----A-GGTAATTGTGTCATC---AAATTGTTAAGATACAAACAC
gi|65308 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCCGTTTTTTT-CC----CCTTC-TGTTTCTATATTAAGA-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CATTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A--TTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTTGAAGGTGATAATTGATGATCCCA--TACCTGTAATTTATCTCT----TCATG--TGTCTGTCCTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65309 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTTTATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TG-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTTCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65310 : ATACAGTTGTTA-CT-CAA-CA-AT-TCGAACTC-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT-CT----CCTTC-TATTTCTATATTAACT-A-GCCCCGGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATCTATTGATTTTTCACTCGTTATTTCGAT-T-TTTT-T-A-ACACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACTTGTATATTATTGCT----TCATG--TATCTGTACTGGCAGGCA-----A-GTTAAATGGGTCATC---AAATTGTTTTGATACAAACAC
gi|65311 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---T---G----TTCCCGTTTT-T--CC----CCTTC-TATATCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATGT-GAATCTGT-TTTT-CGGTCCCTCCATCTTAAAATCAATTGATTTCTCACTCGTTATTT----------T-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TATCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAACTGTGTCATC---AAATTGTTATAATACAAACAC
gi|65312 : ATGCAGTTGATAGCA-TACTCA-AC-TCGAACTC-TTATATTTCGAAATTT-CAGTTATCTCAAATTTGAAATT---C---A----GTCCCGTTTT-TTTCC----CCTTC-TATTTCTATATTAATT-G-ACTCCTGGTATAGCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-CGGTCCC--------AAAATATTTTGATTTCCCACTCGTTATTTCGA-------T-T------------GTGAAAA--TGAAAGGCAAACCGCCTAAGCTGATATTT
gi|65313 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCGAAATTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TGTTTCTATATTAATT-T-ACTCCTGATATAcatg
gi|65314 : ATACAGTTGATA-CT-CGC-CA-AC-TCGAACTG-TTATATTTCGAAATTC-CTGTTATCTAAAATTTGAAGTT---C---G----GTCTCGTTTT-TC-CC----CCTTC-TATTTCTATATCAATT-A-ACTCCTGATATATCAAA-TT--AG-TA-
gi|65315 : ATACAGCTGATA-CT-CAC-TA-AC-TCGAACTC-TTATATTTTGAAATTC-CTGTTATCTCAAATTTGAATTT---C---A----GTCCTGTTTT-TT-CC----CCTTC-TATTTATATATTA
gi|65316 : ATACAGT--ATAACT-T-C-CATATATCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65317 : ATACAGT--ATAACT-T-C-CATATATCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGAAAA-A-AACGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GTATTTT-C
gi|65318 : TACAGTTGATA-CT-CAC-CA-AC-GAAAACTC-TGATATTTCGAATTCC-AGGTTATCTCAAATTTGAAGTT---C---G----ATCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAACT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCCAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TAGTG--TGTCTGTACTGGCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACACacgaccc
gi|65319 : TACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-TC----CCTTC-TGTTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTTCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATATAAACAC
gi|65320 : TACAGTTGTTA-CT-CAC-TA-AC-TCGAACTC-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT-CT----CCTTC-TATTTCTGTATTAATT-A-ACTCCGGATATATCAAA-TTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATATATTGATTTCTCACTCGATATTTCGA--ATTTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGACCCCA--TACCTGTAATTAATCGCT----TCATG--TATCTGTAC-----------------TTAATTGGGCCATC---AAATTGTTATGATACAAACAC
gi|65321 : TACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCGTAATTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCTGTTTT-TT-CC----C-TTC-TATTTCTATATTAATT-A-ACCCCTGTTATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATCTGT-TCTA-AGGTCCCTCCATCCTAAAATCTATTGATTTCTCTCTCGTTACTTCGA--A-TTTT-T-CTTCACC--GCATGAAGA--TTAAAGGCATACTGTCGAAGGTGATAATTGCTGATGCCA--TACCTGTAACTTATGACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65322 : TACAGTTGATA-CT---------------ACTC-TGATATTTCGAAATTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCCGTTTT-TT-TC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TT-AT-TTGAATTA------TTCAC-TATTTCAAATCTGT-TTTG-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACCATGCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCATGTGTCTGTA
gi|65323 : TACAGTTGTTA-CT-CAC-CA-AC-TCGAACTC-TTTTATTTCGAAATTC-CTGTTATCTCAAATTTGAAATT---C---T----GCCCCGTTTT-TT-CT----CCTTC-TATTTCTACATTAATT-A-ACTCCGAATATATCAAA-TTCCAG-AT-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTTAAATCTATTAATTACTCACTCGTTATCTCGATTT-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCACCGAAGGTGATAATTACTGAT-CCA--TACCTGTAATTTATCACT----TCATG--TATCTGTACAGGCAGGTA-----A-ATTAATTGGGTCATC---AAATTGTTATGATAc
gi|65324 : TACAATTGTTA-CT-CAC-CA-AC-TC----TT-T--TATTTCAAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT----------------TTCTATATTAATT-A-ACTCCGGACATATCAAA-TTCAAG-AA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TATT-CGGTACCTCCATATTAAAATCTATTGATTTCTCAATCGTTATTTCGA--A-TTTTTT-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAAATGATAATTGCTGTTCCCA--TACCTATAATTGATCACT----TCATT--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65325 : TACAGTTGATA-AT-CGC-TA-AC-TCAAACTC-TTATATTTCGAAATTC-CTGTTATCTCAAATTGGAAGTT---T---G----GTCACGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCTTGATATATCAAA-TTCCAG-TA-AC-TTGAATTA------TTCAC-TATTTTAAAT----------------CTCCATCCTAAAATCTATTGATTTCTCACTTGTTATTTCGG--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACAACTGAAGGTGATAATTGCTGATCTCA--TACCTATCAT
gi|65326 : TAAAATTGGTA-CT-CAC-CA-AC-TCGAACTT-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCGGTTTT-TT-CT----CCTTC-TGTTTCTATATTAATT-T-ACTCTGGATATATCAAA-GTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATTCGT-TCTT-TGGTCCCGCAGTATTAAAATCTATTGATTTCTTACTCGTTATTTCGA--ATTTTT-T-A-TCACC--G
gi|65327 : TACAGTCGAAA-CT-CAC-CA-AC-TCGAACAC-GCATATCTCAAATTTC-CTG--ATCTTAAAGTTGAAATT---C---A----ATCTCGTTTTTTT-CC----CCTTC-TATTTCTATATAAATT-A-ACTTTGGTTATCTCAAA-TTTCAT-TA-AT-ATGAATTA------TTCAC-T-TTTCGAACCAAT-TCTG-CAGTCCCGACAACACAAACTCAATTGATTTCT--CTTGTTATGCTGA--A-TTTT-T-A-AGACC--ACTTTAAGA--TGAAAGGCAAGCTGCCAAAGGTAA-AA---------CCA--AACCTGTAATTTATTACTCTGATCATGACTGTCCATATCAACAGGTACCGGTATGTTAATTGTGTCACT---GAATTGTTATGATGCAAACAC
gi|65328 : TACAGCTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCAAAATTT-CGGTTATCTCAAATTT----TT---T---GACATGTGCTATTTT-T--------CGTCT-TATTTTT-TATT
gi|65329 : TACAGTTGATA-CT-CGC-TG-AC-TCGAACTC-TTATATTTCGAAACTC-CTGTTATCTCAAATT
gi|65330 : TACAGTTGATA-CT-CGC-TA-AC-TCTAACTC-TTATATTTCGAAATTC-CTGT
gi|65331 : TACAGT--ATAACT-T-C-CATACATCAAACTT-CAATATATCGAATTTCTCGGT-ATATCAAATTT---TTT---CTAAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-AACACAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCAAA---GT-TTTT-
gi|65332 : ACTGTTGATA-CT-CTC-CA-AC-TCAAACTC-TTATATTTTGGAATTC-CTGTCATCTCAA-TTTGAAATT---C---A----GTCGCATTTT-TT-CCTTTTCTTTC-TATTAACATATTAATT-A-ACTCCTGATATAGCAAA-TTCCAG-GA-AT-GCCAATTA------TTCAC-AATTTCCAATCTGT-TCTG-TAATCCCTCCATCCTAAAATCTATTGATTTCTCACTC-TTATTTCAA--A-TTTT-T-A-TCAAC--GCATGAAGA--TGAAAGGCAAACCATCGAAGGTAATAATTTTTGATCCCA--TACCTGTAATTTATCACT----TCATA--TGCCCGTACTGGCAGGTA-----A-GAGAATTGTGTCATA---AAATTGTTATGATACAAACAC
gi|65333 : AGTCAAAA-CT-CAC-CA-AT-TCGAACAC-TCATATTTCAAAATT----------TCAA---TAAA-----------------CCCGTTTT-TC-CCT---CCTTT-TATTTCTAT-TTAATTTA-ACTCCTGATATATCAAA-TTCCAT-TC-AG-TTGAATTG------TTAAC-CAATACG-ACCTTT-TCTC-TGGTCCCTGCAGCACAACTTCCACTGATTTCTCACTCATTATGTCGA--T-TTTT-TCA-AGAGT--GCATGAAGA--TGAAGTGCAAGTCGATGTAGGTTGTAATTGGTGAAACCA--TACCTGT-ATTAATC-C--------TG--TGTCTCTACTGACAAATA-----A-GTTTATTGTGTCATCTTGGAATGGTTATAGTA
gi|65334 : TGATA-TTATAC----AG-TCGGACAC-GCATATCTCAAAAGTC-CTGTTATCTCAAAGTTGAACTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATAAATT-T-ACTCCTT-TATCTCAAA-TTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAACCATT-TCTC-CGGCACCGACAACATCAATTCATTTGATTTCTCACTCGTTATGTTGA--A-TGTT-A-A-GGACC--TCGTGAAGA--TAAAAGGCAGTCCGCCGAAGGTCGTTATTGGTGa
gi|65335 : -TCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65336 : -TTGAACTT-CAATATATCGAATTTCTCGGT-ATATCAAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACTGCAAATATATTGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65337 : ATATCTCAAAAGTC-CTGTTATCTCAAAGTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTCTTTTTTTTATAT
gi|65338 : TAAAATT---T---G----GTCCTATTTT-TT-CT----CCTTC-TATTTCTATTTTAATT-A-ACTCCGGATGTATCAAA-TTCCAG-TA-AT-TCGAATTACCGGTATTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATCTATTTATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-ACACC--GCGTGAAGA--TGAAAGGGAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65339 : TT---C---G----ATCCTGTTTT-TT-CA----CCTTC-TATTTCTATATTAATA-A-ACTCCTGATATGTAAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-TGGTCCCTCCATTCTAAAATCTGTTGATTTCCCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--ACGTGAAGA--TGAAAGGCAAACCGCCAAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65340 : ATATTAATT-A-ACTCCTGATATACCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TACTTCGAATCTGT-TTTT-CCGTCCCTCCATCCTAAAATCTATTGATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTTATCCCA--TACCTGTAATTTATCGCT----TCA--------TGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTCATGATACAAACAC
gi|65341 : -ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCAAATTA------TTCAC-TATTTTGAATC---------CGGTCCCTCAATCCTTATATCTATTGATTTCTCACTCGTTATTTC-A--A-TTTT-T-A-TCACC--GCGTGAAGAGATGAAAGGCAAACTGTCAAAGGTGATAATTAATGATCCCA--TACCTGTAATTTATCAC-------------------ACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65342 : TA------TTTA---AATTAGAATCTTT-TTTC-TCGTTCTTGCAACACAACTTTTATTGATTTCTCACTCATAATGTTG---A-TTTT-T-A-AGATG--ATGTGATGA--TAGAAGATAAGCCAGCGGAGGTTAT-ATTGGTGAAACCA--TACCTGTTATTT
gi|65343 : ATTGATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-TCACT--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTAGCAGTTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65344 : ACTCCTGATAAATCGAACTTC--GGTTATTTCGAATT---ATTTTTAC---G----GTCCCAT
gi|65344 : actcgttatttcgaattccAATA-G-ACTCCTGATAAATCGAA-CTTCGGTTA-TT-TCGAATTA------TTctatttttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65345 : actcgttatttcgaattccatgggaccgtaaaAATT-ACACTCCTGATAAATCAAA-CTTCGGATA-TT-TCGAATTA------TTtttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65346 : actcgttatttcgaattccgtgggaccgtaaa-A-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65347 : actcgttatttcgaattccgtgggaccgtaaaACTCCTGATAAATCGAACTTC--GGTTATTTCGAATT---ATTTTTAC---G----GTCCCttttttgttcaacattttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65347 : actcgttatttcaaattccgtAATA-G-ACTCCTGATAAATCGAA-CTTCGGTTA-TT-TCGAATTA------TTctatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65348 : actcgttatttcaaattccgtgggaccgtaaa-ACTCCTGATTAATCGAA-CTTCGGATA-TT-TCGAATTA------TTtttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65349 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTctatgtttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttatacctataaatac
gi|65350 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATAAATCGAA-GTCCGGATA-TT-TCGAATTA------TTctatgtttgttcaacttttttccgttaccccacccacttcataaatcgttgaaaatatacatgatgtacctataaatac
gi|65351 : actcgttatttcgaattctgtgggaccgtaaaAATA-G-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTctacctttgtgcatcttttcaccgttacccaacccactttataaatcattgataagatatgtgtacatgtaaatac
gi|65352 : actcgttatttagaattccttgggaccgtaaa-ACTCCTGATA-ATTGAA-CTTCGGATA-TT-TCGAATTA------TTtactttttaccgttaccccacccacttcataaatcgttgaaaatatacatattgtacatataaatac
gi|65353 : actcgttatttcgaaatccgtgggaccgtaaaAATC-G-ACTCCTGATAAATAGAA-TTCCGGTTT-AT-TCAAATTA------TTgtatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatggtgtacatataaatac
gi|65354 : actcgttatttcaaattccatgggaccgtaaaGGA-CTCCAGATA-AA-TTGAACT--------TCAGATATTTCGAAT-TAT-TTTTACGGTCCCttcgtgcaattttttattgttaccccatccacttcataaatcgttaagaatataattatgggtacatgtaaatac
gi|65355 : actctttatttcgaattccgtAATA-G-ACTCCTGATAAATCGAT-CTTCAGATA-TT-TCGAATTA------TTtaattttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
Alignments
lowQualScore : 1
lowQualScore : 5 1 1 3 3 2 2 1 5 2 333 999 2222 2 1 3333 1 1 0 0 4 0 0 4 4 222222 1 1 1 1 33 2 1 4 1 22 22 0 5 22 3333 22 44444 1 333
lowQualScore : . . . . . . . . . . ... ... .... . . .... . . . . . . . . . ...... . . . . .. . . . . .. .. . . .. .... .. ..... . ...
lowQualScore : 2 3 3 9 6 3 1 0 6 7 999 777 4444 4 2 7777 2 0 9 2 5 5 9 5 7 666666 2 2 2 2 44 9 4 3 4 00 00 1 8 22 9999 55 55555 8 222
consensus : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
Reference ( family-474 ) : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65304 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTCC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCATGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCATC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TCATG--TGTCTGTACTGTCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65305 : ATACAGTTGATA-CT-CAC-AA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-ATTT-CGGTCCCTCCATCCTAAAATCAATTAATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACT--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCCGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65306 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTG-TGGTTATCTCAAATTTGAAGTG---C---G----GTCCCGTTTT-TT-CC----CTTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-GTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGCTACAAACAC
gi|65307 : ATACAGTTGACA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-TC----CCTTC-TATTTCTATATTCATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTACGAATCTGT-TTTT-GGGTCCCTCCATTCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAAGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TTGTG--TGTCTGTACTGGCAGGTA-----A-GGTAATTGTGTCATC---AAATTGTTAAGATACAAACAC
gi|65308 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCCGTTTTTTT-CC----CCTTC-TGTTTCTATATTAAGA-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CATTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A--TTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTTGAAGGTGATAATTGATGATCCCA--TACCTGTAATTTATCTCT----TCATG--TGTCTGTCCTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65309 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTTTATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TG-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTTCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65310 : ATACAGTTGTTA-CT-CAA-CA-AT-TCGAACTC-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT-CT----CCTTC-TATTTCTATATTAACT-A-GCCCCGGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATCTATTGATTTTTCACTCGTTATTTCGAT-T-TTTT-T-A-ACACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACTTGTATATTATTGCT----TCATG--TATCTGTACTGGCAGGCA-----A-GTTAAATGGGTCATC---AAATTGTTTTGATACAAACAC
gi|65311 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---T---G----TTCCCGTTTT-T--CC----CCTTC-TATATCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATGT-GAATCTGT-TTTT-CGGTCCCTCCATCTTAAAATCAATTGATTTCTCACTCGTTATTT----------T-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TATCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAACTGTGTCATC---AAATTGTTATAATACAAACAC
gi|65312 : ATGCAGTTGATAGCA-TACTCA-AC-TCGAACTC-TTATATTTCGAAATTT-CAGTTATCTCAAATTTGAAATT---C---A----GTCCCGTTTT-TTTCC----CCTTC-TATTTCTATATTAATT-G-ACTCCTGGTATAGCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-CGGTCCC--------AAAATATTTTGATTTCCCACTCGTTATTTCGA-------T-T------------GTGAAAA--TGAAAGGCAAACCGCCTAAGCTGATATTT
gi|65313 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCGAAATTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TGTTTCTATATTAATT-T-ACTCCTGATATAcatg
gi|65314 : ATACAGTTGATA-CT-CGC-CA-AC-TCGAACTG-TTATATTTCGAAATTC-CTGTTATCTAAAATTTGAAGTT---C---G----GTCTCGTTTT-TC-CC----CCTTC-TATTTCTATATCAATT-A-ACTCCTGATATATCAAA-TT--AG-TA-
gi|65315 : ATACAGCTGATA-CT-CAC-TA-AC-TCGAACTC-TTATATTTTGAAATTC-CTGTTATCTCAAATTTGAATTT---C---A----GTCCTGTTTT-TT-CC----CCTTC-TATTTATATATTA
gi|65316 : ATACAGT--ATAACT-T-C-CATATATCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65317 : ATACAGT--ATAACT-T-C-CATATATCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGAAAA-A-AACGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GTATTTT-C
gi|65318 : TACAGTTGATA-CT-CAC-CA-AC-GAAAACTC-TGATATTTCGAATTCC-AGGTTATCTCAAATTTGAAGTT---C---G----ATCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAACT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCCAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TAGTG--TGTCTGTACTGGCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACACacgaccc
gi|65319 : TACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-TC----CCTTC-TGTTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTTCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATATAAACAC
gi|65320 : TACAGTTGTTA-CT-CAC-TA-AC-TCGAACTC-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT-CT----CCTTC-TATTTCTGTATTAATT-A-ACTCCGGATATATCAAA-TTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATATATTGATTTCTCACTCGATATTTCGA--ATTTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGACCCCA--TACCTGTAATTAATCGCT----TCATG--TATCTGTAC-----------------TTAATTGGGCCATC---AAATTGTTATGATACAAACAC
gi|65321 : TACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCGTAATTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCTGTTTT-TT-CC----C-TTC-TATTTCTATATTAATT-A-ACCCCTGTTATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATCTGT-TCTA-AGGTCCCTCCATCCTAAAATCTATTGATTTCTCTCTCGTTACTTCGA--A-TTTT-T-CTTCACC--GCATGAAGA--TTAAAGGCATACTGTCGAAGGTGATAATTGCTGATGCCA--TACCTGTAACTTATGACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65322 : TACAGTTGATA-CT---------------ACTC-TGATATTTCGAAATTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCCGTTTT-TT-TC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TT-AT-TTGAATTA------TTCAC-TATTTCAAATCTGT-TTTG-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACCATGCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCATGTGTCTGTA
gi|65323 : TACAGTTGTTA-CT-CAC-CA-AC-TCGAACTC-TTTTATTTCGAAATTC-CTGTTATCTCAAATTTGAAATT---C---T----GCCCCGTTTT-TT-CT----CCTTC-TATTTCTACATTAATT-A-ACTCCGAATATATCAAA-TTCCAG-AT-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTTAAATCTATTAATTACTCACTCGTTATCTCGATTT-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCACCGAAGGTGATAATTACTGAT-CCA--TACCTGTAATTTATCACT----TCATG--TATCTGTACAGGCAGGTA-----A-ATTAATTGGGTCATC---AAATTGTTATGATAc
gi|65324 : TACAATTGTTA-CT-CAC-CA-AC-TC----TT-T--TATTTCAAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT----------------TTCTATATTAATT-A-ACTCCGGACATATCAAA-TTCAAG-AA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TATT-CGGTACCTCCATATTAAAATCTATTGATTTCTCAATCGTTATTTCGA--A-TTTTTT-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAAATGATAATTGCTGTTCCCA--TACCTATAATTGATCACT----TCATT--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65325 : TACAGTTGATA-AT-CGC-TA-AC-TCAAACTC-TTATATTTCGAAATTC-CTGTTATCTCAAATTGGAAGTT---T---G----GTCACGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCTTGATATATCAAA-TTCCAG-TA-AC-TTGAATTA------TTCAC-TATTTTAAAT----------------CTCCATCCTAAAATCTATTGATTTCTCACTTGTTATTTCGG--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACAACTGAAGGTGATAATTGCTGATCTCA--TACCTATCAT
gi|65326 : TAAAATTGGTA-CT-CAC-CA-AC-TCGAACTT-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCGGTTTT-TT-CT----CCTTC-TGTTTCTATATTAATT-T-ACTCTGGATATATCAAA-GTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATTCGT-TCTT-TGGTCCCGCAGTATTAAAATCTATTGATTTCTTACTCGTTATTTCGA--ATTTTT-T-A-TCACC--G
gi|65327 : TACAGTCGAAA-CT-CAC-CA-AC-TCGAACAC-GCATATCTCAAATTTC-CTG--ATCTTAAAGTTGAAATT---C---A----ATCTCGTTTTTTT-CC----CCTTC-TATTTCTATATAAATT-A-ACTTTGGTTATCTCAAA-TTTCAT-TA-AT-ATGAATTA------TTCAC-T-TTTCGAACCAAT-TCTG-CAGTCCCGACAACACAAACTCAATTGATTTCT--CTTGTTATGCTGA--A-TTTT-T-A-AGACC--ACTTTAAGA--TGAAAGGCAAGCTGCCAAAGGTAA-AA---------CCA--AACCTGTAATTTATTACTCTGATCATGACTGTCCATATCAACAGGTACCGGTATGTTAATTGTGTCACT---GAATTGTTATGATGCAAACAC
gi|65328 : TACAGCTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCAAAATTT-CGGTTATCTCAAATTT----TT---T---GACATGTGCTATTTT-T--------CGTCT-TATTTTT-TATT
gi|65329 : TACAGTTGATA-CT-CGC-TG-AC-TCGAACTC-TTATATTTCGAAACTC-CTGTTATCTCAAATT
gi|65330 : TACAGTTGATA-CT-CGC-TA-AC-TCTAACTC-TTATATTTCGAAATTC-CTGT
gi|65331 : TACAGT--ATAACT-T-C-CATACATCAAACTT-CAATATATCGAATTTCTCGGT-ATATCAAATTT---TTT---CTAAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-AACACAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCAAA---GT-TTTT-
gi|65332 : ACTGTTGATA-CT-CTC-CA-AC-TCAAACTC-TTATATTTTGGAATTC-CTGTCATCTCAA-TTTGAAATT---C---A----GTCGCATTTT-TT-CCTTTTCTTTC-TATTAACATATTAATT-A-ACTCCTGATATAGCAAA-TTCCAG-GA-AT-GCCAATTA------TTCAC-AATTTCCAATCTGT-TCTG-TAATCCCTCCATCCTAAAATCTATTGATTTCTCACTC-TTATTTCAA--A-TTTT-T-A-TCAAC--GCATGAAGA--TGAAAGGCAAACCATCGAAGGTAATAATTTTTGATCCCA--TACCTGTAATTTATCACT----TCATA--TGCCCGTACTGGCAGGTA-----A-GAGAATTGTGTCATA---AAATTGTTATGATACAAACAC
gi|65333 : AGTCAAAA-CT-CAC-CA-AT-TCGAACAC-TCATATTTCAAAATT----------TCAA---TAAA-----------------CCCGTTTT-TC-CCT---CCTTT-TATTTCTAT-TTAATTTA-ACTCCTGATATATCAAA-TTCCAT-TC-AG-TTGAATTG------TTAAC-CAATACG-ACCTTT-TCTC-TGGTCCCTGCAGCACAACTTCCACTGATTTCTCACTCATTATGTCGA--T-TTTT-TCA-AGAGT--GCATGAAGA--TGAAGTGCAAGTCGATGTAGGTTGTAATTGGTGAAACCA--TACCTGT-ATTAATC-C--------TG--TGTCTCTACTGACAAATA-----A-GTTTATTGTGTCATCTTGGAATGGTTATAGTA
gi|65334 : TGATA-TTATAC----AG-TCGGACAC-GCATATCTCAAAAGTC-CTGTTATCTCAAAGTTGAACTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATAAATT-T-ACTCCTT-TATCTCAAA-TTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAACCATT-TCTC-CGGCACCGACAACATCAATTCATTTGATTTCTCACTCGTTATGTTGA--A-TGTT-A-A-GGACC--TCGTGAAGA--TAAAAGGCAGTCCGCCGAAGGTCGTTATTGGTGa
gi|65335 : -TCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65336 : -TTGAACTT-CAATATATCGAATTTCTCGGT-ATATCAAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACTGCAAATATATTGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65337 : ATATCTCAAAAGTC-CTGTTATCTCAAAGTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTCTTTTTTTTATAT
gi|65338 : TAAAATT---T---G----GTCCTATTTT-TT-CT----CCTTC-TATTTCTATTTTAATT-A-ACTCCGGATGTATCAAA-TTCCAG-TA-AT-TCGAATTACCGGTATTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATCTATTTATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-ACACC--GCGTGAAGA--TGAAAGGGAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65339 : TT---C---G----ATCCTGTTTT-TT-CA----CCTTC-TATTTCTATATTAATA-A-ACTCCTGATATGTAAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-TGGTCCCTCCATTCTAAAATCTGTTGATTTCCCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--ACGTGAAGA--TGAAAGGCAAACCGCCAAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65340 : ATATTAATT-A-ACTCCTGATATACCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TACTTCGAATCTGT-TTTT-CCGTCCCTCCATCCTAAAATCTATTGATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTTATCCCA--TACCTGTAATTTATCGCT----TCA--------TGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTCATGATACAAACAC
gi|65341 : -ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCAAATTA------TTCAC-TATTTTGAATC---------CGGTCCCTCAATCCTTATATCTATTGATTTCTCACTCGTTATTTC-A--A-TTTT-T-A-TCACC--GCGTGAAGAGATGAAAGGCAAACTGTCAAAGGTGATAATTAATGATCCCA--TACCTGTAATTTATCAC-------------------ACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65342 : TA------TTTA---AATTAGAATCTTT-TTTC-TCGTTCTTGCAACACAACTTTTATTGATTTCTCACTCATAATGTTG---A-TTTT-T-A-AGATG--ATGTGATGA--TAGAAGATAAGCCAGCGGAGGTTAT-ATTGGTGAAACCA--TACCTGTTATTT
gi|65343 : ATTGATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-TCACT--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTAGCAGTTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65344 : ACTCCTGATAAATCGAACTTC--GGTTATTTCGAATT---ATTTTTAC---G----GTCCCAT
gi|65344 : actcgttatttcgaattccAATA-G-ACTCCTGATAAATCGAA-CTTCGGTTA-TT-TCGAATTA------TTctatttttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65345 : actcgttatttcgaattccatgggaccgtaaaAATT-ACACTCCTGATAAATCAAA-CTTCGGATA-TT-TCGAATTA------TTtttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65346 : actcgttatttcgaattccgtgggaccgtaaa-A-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65347 : actcgttatttcgaattccgtgggaccgtaaaACTCCTGATAAATCGAACTTC--GGTTATTTCGAATT---ATTTTTAC---G----GTCCCttttttgttcaacattttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65347 : actcgttatttcaaattccgtAATA-G-ACTCCTGATAAATCGAA-CTTCGGTTA-TT-TCGAATTA------TTctatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65348 : actcgttatttcaaattccgtgggaccgtaaa-ACTCCTGATTAATCGAA-CTTCGGATA-TT-TCGAATTA------TTtttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65349 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTctatgtttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttatacctataaatac
gi|65350 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATAAATCGAA-GTCCGGATA-TT-TCGAATTA------TTctatgtttgttcaacttttttccgttaccccacccacttcataaatcgttgaaaatatacatgatgtacctataaatac
gi|65351 : actcgttatttcgaattctgtgggaccgtaaaAATA-G-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTctacctttgtgcatcttttcaccgttacccaacccactttataaatcattgataagatatgtgtacatgtaaatac
gi|65352 : actcgttatttagaattccttgggaccgtaaa-ACTCCTGATA-ATTGAA-CTTCGGATA-TT-TCGAATTA------TTtactttttaccgttaccccacccacttcataaatcgttgaaaatatacatattgtacatataaatac
gi|65353 : actcgttatttcgaaatccgtgggaccgtaaaAATC-G-ACTCCTGATAAATAGAA-TTCCGGTTT-AT-TCAAATTA------TTgtatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatggtgtacatataaatac
gi|65354 : actcgttatttcaaattccatgggaccgtaaaGGA-CTCCAGATA-AA-TTGAACT--------TCAGATATTTCGAAT-TAT-TTTTACGGTCCCttcgtgcaattttttattgttaccccatccacttcataaatcgttaagaatataattatgggtacatgtaaatac
gi|65355 : actctttatttcgaattccgtAATA-G-ACTCCTGATAAATCGAT-CTTCAGATA-TT-TCGAATTA------TTtaattttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
blockSeqs : G A T T A C G T T G TTA TCA ACAT T T TTTT T T G T C A CCGGTA A T A A TT T T C T AT GA T TG CTGA AC CCGGT T TTG
blockSeqs : A . . T A C G T T G TTA TCA . T . T . . G A C A . . T . . T T . T . . . T . . . . . .
blockSeqs : A . . T A . G T T G . TAA . . . . . . G A C A . . T . . . . . T . . . T . . . . . .
blockSeqs : A . . . . . G T T G . TCA . . . . . . G T C A . . T . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . G T T G . TCA . . . . . . G A C A . . T . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . T A . A . . . . . . . . . A . . . . C . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . G T . G . . . . . . . . . A . . . . T . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . T A . A . . . . . . . . . A . . . . T . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . T A . G . . . . . . . . . A . . . . T . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . T A . G . . . . . . . . . T . . . . T . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . T A . T . . . . . . . . . A . . . . C . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . A T . G . . . . . . . . . A . . . . T . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . A T . G . . . . . . . . . . . . . . T . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . G T . A . . . . . . . . . . . . . . C . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . G T . G . . . . . . . . . . . . . . C . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . T A . G . . . . . . . . . . . . . . C . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . T A . A . . . . . . . . . . . . . . A . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . G A . A . . . . . . . . . . . . . . T . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . T A . G . . . . . . . . . . . . . . T . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . T A . A . . . . . . . . . . . . . . A . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . T A . A . . . . . . . . . . . . . . C . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . C A . T . . . . . . . . . . . . . . T . . . . . . . . . C .
blockSeqs : . . . . . . T T . A . . . . . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . T A . C . . . . . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . T A . G . . . . . . . . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . A A . A . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . T T . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . C A . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . C A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G T . . . . . . . . . . . . . . . . . . .
blockSeqs : . G A . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . .
blockSeqs : C . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
finalCons : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
Alignments
lowQualScore : 1
lowQualScore : 5 1 1 3 3 2 2 1 5 2 333 999 2222 2 1 3333 1 1 0 0 4 0 0 4 4 222222 1 1 1 1 33 2 1 4 1 22 22 0 5 22 3333 22 44444 1 333
lowQualScore : . . . . . . . . . . ... ... .... . . .... . . . . . . . . . ...... . . . . .. . . . . .. .. . . .. .... .. ..... . ...
lowQualScore : 2 3 3 9 6 3 1 0 6 7 999 777 4444 4 2 7777 2 0 9 2 5 5 9 5 7 666666 2 2 2 2 44 9 4 3 4 00 00 1 8 22 9999 55 55555 8 222
consensus : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
Reference ( family-474 ) : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TNATATTTCGAANTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCGAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65304 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTCC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCATGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCATC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TCATG--TGTCTGTACTGTCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65305 : ATACAGTTGATA-CT-CAC-AA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-ATTT-CGGTCCCTCCATCCTAAAATCAATTAATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACT--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCCGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65306 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTG-TGGTTATCTCAAATTTGAAGTG---C---G----GTCCCGTTTT-TT-CC----CTTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-GTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGCTACAAACAC
gi|65307 : ATACAGTTGACA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-TC----CCTTC-TATTTCTATATTCATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTACGAATCTGT-TTTT-GGGTCCCTCCATTCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAAGTGATAATTGTTGATCCCA--TACCTGTAATTTATCGCT----TTGTG--TGTCTGTACTGGCAGGTA-----A-GGTAATTGTGTCATC---AAATTGTTAAGATACAAACAC
gi|65308 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCCGTTTTTTT-CC----CCTTC-TGTTTCTATATTAAGA-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-CATTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A--TTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTTGAAGGTGATAATTGATGATCCCA--TACCTGTAATTTATCTCT----TCATG--TGTCTGTCCTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65309 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTTTATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TG-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTTCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65310 : ATACAGTTGTTA-CT-CAA-CA-AT-TCGAACTC-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT-CT----CCTTC-TATTTCTATATTAACT-A-GCCCCGGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATCTATTGATTTTTCACTCGTTATTTCGAT-T-TTTT-T-A-ACACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACTTGTATATTATTGCT----TCATG--TATCTGTACTGGCAGGCA-----A-GTTAAATGGGTCATC---AAATTGTTTTGATACAAACAC
gi|65311 : ATACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---T---G----TTCCCGTTTT-T--CC----CCTTC-TATATCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATGT-GAATCTGT-TTTT-CGGTCCCTCCATCTTAAAATCAATTGATTTCTCACTCGTTATTT----------T-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TATCTGTAATTTATCGCT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAACTGTGTCATC---AAATTGTTATAATACAAACAC
gi|65312 : ATGCAGTTGATAGCA-TACTCA-AC-TCGAACTC-TTATATTTCGAAATTT-CAGTTATCTCAAATTTGAAATT---C---A----GTCCCGTTTT-TTTCC----CCTTC-TATTTCTATATTAATT-G-ACTCCTGGTATAGCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-CGGTCCC--------AAAATATTTTGATTTCCCACTCGTTATTTCGA-------T-T------------GTGAAAA--TGAAAGGCAAACCGCCTAAGCTGATATTT
gi|65313 : ATACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCGAAATTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TGTTTCTATATTAATT-T-ACTCCTGATATAcatg
gi|65314 : ATACAGTTGATA-CT-CGC-CA-AC-TCGAACTG-TTATATTTCGAAATTC-CTGTTATCTAAAATTTGAAGTT---C---G----GTCTCGTTTT-TC-CC----CCTTC-TATTTCTATATCAATT-A-ACTCCTGATATATCAAA-TT--AG-TA-
gi|65315 : ATACAGCTGATA-CT-CAC-TA-AC-TCGAACTC-TTATATTTTGAAATTC-CTGTTATCTCAAATTTGAATTT---C---A----GTCCTGTTTT-TT-CC----CCTTC-TATTTATATATTA
gi|65316 : ATACAGT--ATAACT-T-C-CATATATCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65317 : ATACAGT--ATAACT-T-C-CATATATCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGAAAA-A-AACGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GTATTTT-C
gi|65318 : TACAGTTGATA-CT-CAC-CA-AC-GAAAACTC-TGATATTTCGAATTCC-AGGTTATCTCAAATTTGAAGTT---C---G----ATCCCGTTTT-TT-CC----CCTTC-TATTTCTATATTAACT-A-ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCCAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCCTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCA--TACCTGTAATTAATCGCT----TAGTG--TGTCTGTACTGGCAGGTT-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACACacgaccc
gi|65319 : TACAGTTGATA-CT-CAC-CA-AC-TCGAACTC-TGATATTTCGAATTTC-CGGTTATCTCAAATTTGAAGTT---C---G----GTCCCGTTTT-TT-TC----CCTTC-TGTTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TA-TT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TTTT-GGGTCCCTTCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTG--------------CTGTAATTTATCGCT----TCATG--TGTCGGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATATAAACAC
gi|65320 : TACAGTTGTTA-CT-CAC-TA-AC-TCGAACTC-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT-CT----CCTTC-TATTTCTGTATTAATT-A-ACTCCGGATATATCAAA-TTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATATATTGATTTCTCACTCGATATTTCGA--ATTTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGACCCCA--TACCTGTAATTAATCGCT----TCATG--TATCTGTAC-----------------TTAATTGGGCCATC---AAATTGTTATGATACAAACAC
gi|65321 : TACAGTTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCGTAATTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCTGTTTT-TT-CC----C-TTC-TATTTCTATATTAATT-A-ACCCCTGTTATATCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATCTGT-TCTA-AGGTCCCTCCATCCTAAAATCTATTGATTTCTCTCTCGTTACTTCGA--A-TTTT-T-CTTCACC--GCATGAAGA--TTAAAGGCATACTGTCGAAGGTGATAATTGCTGATGCCA--TACCTGTAACTTATGACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65322 : TACAGTTGATA-CT---------------ACTC-TGATATTTCGAAATTC-CGGTTATCTCAAATTTGAAGTT---T---G----GTCCCGTTTT-TT-TC----CCTTC-TATTTCTATATTAATT-A-ACTCCTGATATATCAAA-TTCCAG-TT-AT-TTGAATTA------TTCAC-TATTTCAAATCTGT-TTTG-CGGTCCCTCCATCCTAAAATCTATTGATTTCTCACTCGTTATTTCGA--A-TTTT-T-A-TCACCATGCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTGATCCCATGTGTCTGTA
gi|65323 : TACAGTTGTTA-CT-CAC-CA-AC-TCGAACTC-TTTTATTTCGAAATTC-CTGTTATCTCAAATTTGAAATT---C---T----GCCCCGTTTT-TT-CT----CCTTC-TATTTCTACATTAATT-A-ACTCCGAATATATCAAA-TTCCAG-AT-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTTAAATCTATTAATTACTCACTCGTTATCTCGATTT-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCACCGAAGGTGATAATTACTGAT-CCA--TACCTGTAATTTATCACT----TCATG--TATCTGTACAGGCAGGTA-----A-ATTAATTGGGTCATC---AAATTGTTATGATAc
gi|65324 : TACAATTGTTA-CT-CAC-CA-AC-TC----TT-T--TATTTCAAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCCGTTTT-TT----------------TTCTATATTAATT-A-ACTCCGGACATATCAAA-TTCAAG-AA-AT-TCGAATTA------TTCAC-TATTTCGAATTCGT-TATT-CGGTACCTCCATATTAAAATCTATTGATTTCTCAATCGTTATTTCGA--A-TTTTTT-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGCCGAAAATGATAATTGCTGTTCCCA--TACCTATAATTGATCACT----TCATT--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65325 : TACAGTTGATA-AT-CGC-TA-AC-TCAAACTC-TTATATTTCGAAATTC-CTGTTATCTCAAATTGGAAGTT---T---G----GTCACGTTTT-TT-CC----CCTTC-TATTTCTATATTAATT-A-ACTCTTGATATATCAAA-TTCCAG-TA-AC-TTGAATTA------TTCAC-TATTTTAAAT----------------CTCCATCCTAAAATCTATTGATTTCTCACTTGTTATTTCGG--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACAACTGAAGGTGATAATTGCTGATCTCA--TACCTATCAT
gi|65326 : TAAAATTGGTA-CT-CAC-CA-AC-TCGAACTT-TTTTATTTCGAAATTC-CGGTTATCTCAAATTTGAAATT---C---G----GTCCGGTTTT-TT-CT----CCTTC-TGTTTCTATATTAATT-T-ACTCTGGATATATCAAA-GTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCAAATTCGT-TCTT-TGGTCCCGCAGTATTAAAATCTATTGATTTCTTACTCGTTATTTCGA--ATTTTT-T-A-TCACC--G
gi|65327 : TACAGTCGAAA-CT-CAC-CA-AC-TCGAACAC-GCATATCTCAAATTTC-CTG--ATCTTAAAGTTGAAATT---C---A----ATCTCGTTTTTTT-CC----CCTTC-TATTTCTATATAAATT-A-ACTTTGGTTATCTCAAA-TTTCAT-TA-AT-ATGAATTA------TTCAC-T-TTTCGAACCAAT-TCTG-CAGTCCCGACAACACAAACTCAATTGATTTCT--CTTGTTATGCTGA--A-TTTT-T-A-AGACC--ACTTTAAGA--TGAAAGGCAAGCTGCCAAAGGTAA-AA---------CCA--AACCTGTAATTTATTACTCTGATCATGACTGTCCATATCAACAGGTACCGGTATGTTAATTGTGTCACT---GAATTGTTATGATGCAAACAC
gi|65328 : TACAGCTGATA-CT-CAC-CA-AC-TCAAACTC-TTATATTTCAAAATTT-CGGTTATCTCAAATTT----TT---T---GACATGTGCTATTTT-T--------CGTCT-TATTTTT-TATT
gi|65329 : TACAGTTGATA-CT-CGC-TG-AC-TCGAACTC-TTATATTTCGAAACTC-CTGTTATCTCAAATT
gi|65330 : TACAGTTGATA-CT-CGC-TA-AC-TCTAACTC-TTATATTTCGAAATTC-CTGT
gi|65331 : TACAGT--ATAACT-T-C-CATACATCAAACTT-CAATATATCGAATTTCTCGGT-ATATCAAATTT---TTT---CTAAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-AACACAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCAAA---GT-TTTT-
gi|65332 : ACTGTTGATA-CT-CTC-CA-AC-TCAAACTC-TTATATTTTGGAATTC-CTGTCATCTCAA-TTTGAAATT---C---A----GTCGCATTTT-TT-CCTTTTCTTTC-TATTAACATATTAATT-A-ACTCCTGATATAGCAAA-TTCCAG-GA-AT-GCCAATTA------TTCAC-AATTTCCAATCTGT-TCTG-TAATCCCTCCATCCTAAAATCTATTGATTTCTCACTC-TTATTTCAA--A-TTTT-T-A-TCAAC--GCATGAAGA--TGAAAGGCAAACCATCGAAGGTAATAATTTTTGATCCCA--TACCTGTAATTTATCACT----TCATA--TGCCCGTACTGGCAGGTA-----A-GAGAATTGTGTCATA---AAATTGTTATGATACAAACAC
gi|65333 : AGTCAAAA-CT-CAC-CA-AT-TCGAACAC-TCATATTTCAAAATT----------TCAA---TAAA-----------------CCCGTTTT-TC-CCT---CCTTT-TATTTCTAT-TTAATTTA-ACTCCTGATATATCAAA-TTCCAT-TC-AG-TTGAATTG------TTAAC-CAATACG-ACCTTT-TCTC-TGGTCCCTGCAGCACAACTTCCACTGATTTCTCACTCATTATGTCGA--T-TTTT-TCA-AGAGT--GCATGAAGA--TGAAGTGCAAGTCGATGTAGGTTGTAATTGGTGAAACCA--TACCTGT-ATTAATC-C--------TG--TGTCTCTACTGACAAATA-----A-GTTTATTGTGTCATCTTGGAATGGTTATAGTA
gi|65334 : TGATA-TTATAC----AG-TCGGACAC-GCATATCTCAAAAGTC-CTGTTATCTCAAAGTTGAACTT---C---G----GTCCCGTTTT-TT-CC----CCTTC-TATTTCTATATAAATT-T-ACTCCTT-TATCTCAAA-TTCCAG-TA-AT-TCGAATCA------TTCAC-TATTTCGAACCATT-TCTC-CGGCACCGACAACATCAATTCATTTGATTTCTCACTCGTTATGTTGA--A-TGTT-A-A-GGACC--TCGTGAAGA--TAAAAGGCAGTCCGCCGAAGGTCGTTATTGGTGa
gi|65335 : -TCGAACTT-CAATATATCGAATTTCTCGGT-ATATCGAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACCGCAAATATATCGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65336 : -TTGAACTT-CAATATATCGAATTTCTCGGT-ATATCAAACTTT---TT---CTCAA----GTCCCAACTT-TT-TT----CCTTC-TAAATCTATATGGAAA-A-ACTGCAAATATATTGAAGTT---A-TACATATCGAATTT------TTCAG-TATATCGAA---GT-TTTT-
gi|65337 : ATATCTCAAAAGTC-CTGTTATCTCAAAGTTGAAGTT---C---G----GTCCCGTTTT-TT-CC----CCTTCTTTTTTTTATAT
gi|65338 : TAAAATT---T---G----GTCCTATTTT-TT-CT----CCTTC-TATTTCTATTTTAATT-A-ACTCCGGATGTATCAAA-TTCCAG-TA-AT-TCGAATTACCGGTATTCAC-TATTTCGAATTCGT-TCTT-CGGTCCCTCCATATTAAAATCTATTTATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-ACACC--GCGTGAAGA--TGAAAGGGAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTGGCAGGTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65339 : TT---C---G----ATCCTGTTTT-TT-CA----CCTTC-TATTTCTATATTAATA-A-ACTCCTGATATGTAAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TATTTCGAATCTGT-TCTT-TGGTCCCTCCATTCTAAAATCTGTTGATTTCCCACTCGTTATTTCGA--A-TTTT-T-A-TCACC--ACGTGAAGA--TGAAAGGCAAACCGCCAAAGGTGATAATTGTTGATCCCA--TACCTGTAATTTATCACT----TCATG--TGTCTGTACTGGCAGGTA-----A-GTTAATTGTGTTATC---AAATTGTTATGATACAAACAC
gi|65340 : ATATTAATT-A-ACTCCTGATATACCAAA-TTCCAG-TA-AT-TCGAATTA------TTCAC-TACTTCGAATCTGT-TTTT-CCGTCCCTCCATCCTAAAATCTATTGATTTCTCACTTGTTATTTCGA--A-TTTT-T-A-TCACC--GCGTGAAGA--TGAAAGGCAAACCGTCGAAGGTGATAATTGTTTATCCCA--TACCTGTAATTTATCGCT----TCA--------TGTACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTCATGATACAAACAC
gi|65341 : -ACTCCTGATATATCAAA-TTCCAG-TA-AT-TCAAATTA------TTCAC-TATTTTGAATC---------CGGTCCCTCAATCCTTATATCTATTGATTTCTCACTCGTTATTTC-A--A-TTTT-T-A-TCACC--GCGTGAAGAGATGAAAGGCAAACTGTCAAAGGTGATAATTAATGATCCCA--TACCTGTAATTTATCAC-------------------ACTGGCAGGTA-----A-GTTAATTGTGTCATC---AAATTGTTATGATACAAACAC
gi|65342 : TA------TTTA---AATTAGAATCTTT-TTTC-TCGTTCTTGCAACACAACTTTTATTGATTTCTCACTCATAATGTTG---A-TTTT-T-A-AGATG--ATGTGATGA--TAGAAGATAAGCCAGCGGAGGTTAT-ATTGGTGAAACCA--TACCTGTTATTT
gi|65343 : ATTGATTTCTCACTCGTTATTTCGA--A-TTTT-TTA-TCACT--GCGTGAAGA--TGAAAGGCAAACCGCCGAAGGTGATAATTGCTGATCCCA--TACCTGTAATTTATTGCT----TCATG--TATCTGTACTAGCAGTTA-----A-GTTAATTGGGTCATC---AAATTGTTATGATACAAACAC
gi|65344 : ACTCCTGATAAATCGAACTTC--GGTTATTTCGAATT---ATTTTTAC---G----GTCCCAT
gi|65344 : actcgttatttcgaattccAATA-G-ACTCCTGATAAATCGAA-CTTCGGTTA-TT-TCGAATTA------TTctatttttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65345 : actcgttatttcgaattccatgggaccgtaaaAATT-ACACTCCTGATAAATCAAA-CTTCGGATA-TT-TCGAATTA------TTtttgttcaactttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65346 : actcgttatttcgaattccgtgggaccgtaaa-A-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65347 : actcgttatttcgaattccgtgggaccgtaaaACTCCTGATAAATCGAACTTC--GGTTATTTCGAATT---ATTTTTAC---G----GTCCCttttttgttcaacattttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65347 : actcgttatttcaaattccgtAATA-G-ACTCCTGATAAATCGAA-CTTCGGTTA-TT-TCGAATTA------TTctatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65348 : actcgttatttcaaattccgtgggaccgtaaa-ACTCCTGATTAATCGAA-CTTCGGATA-TT-TCGAATTA------TTtttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac
gi|65349 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTctatgtttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttatacctataaatac
gi|65350 : actcgttatttcgaattccgtgggaccttgaa-ACTCCTGATAAATCGAA-GTCCGGATA-TT-TCGAATTA------TTctatgtttgttcaacttttttccgttaccccacccacttcataaatcgttgaaaatatacatgatgtacctataaatac
gi|65351 : actcgttatttcgaattctgtgggaccgtaaaAATA-G-ACTCCTGATAAATCGAA-CTTCGGATA-TT-TCGAATTA------TTctacctttgtgcatcttttcaccgttacccaacccactttataaatcattgataagatatgtgtacatgtaaatac
gi|65352 : actcgttatttagaattccttgggaccgtaaa-ACTCCTGATA-ATTGAA-CTTCGGATA-TT-TCGAATTA------TTtactttttaccgttaccccacccacttcataaatcgttgaaaatatacatattgtacatataaatac
gi|65353 : actcgttatttcgaaatccgtgggaccgtaaaAATC-G-ACTCCTGATAAATAGAA-TTCCGGTTT-AT-TCAAATTA------TTgtatttttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatggtgtacatataaatac
gi|65354 : actcgttatttcaaattccatgggaccgtaaaGGA-CTCCAGATA-AA-TTGAACT--------TCAGATATTTCGAAT-TAT-TTTTACGGTCCCttcgtgcaattttttattgttaccccatccacttcataaatcgttaagaatataattatgggtacatgtaaatac
gi|65355 : actctttatttcgaattccgtAATA-G-ACTCCTGATAAATCGAT-CTTCAGATA-TT-TCGAATTA------TTtaattttgttcaactttttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatac