lowQualScore : 1111
lowQualScore : 4 77777 11 7777 3333 3 1111 0 66 111 22 0
lowQualScore : . ..... .. .... .... . .... . .. ... .. .
lowQualScore : 1 88888 99 6666 5555 4 8888 8 55 555 99 9
consensus : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGGAAGCGATATGTCGCGCCAACA----TACATC--AA---GCACAT-T--ATGCATACAATATTCATCT----TAT-CTC-AAA---TA--TACT-AGTATTTTTGCA
Reference ( gi|131118 ) : AAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATGGAAGCGATATGTCGCGCCAACG----TACATC--AT---GCACAT-T--ATGCATACAATATTCATCT----TAT-CTT-AAA---TA--TACT-AGTATTTTTGCA
gi|131107 : AAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGGAAGTGATATGTCGCGCCAACA----TACAAC--AA---GCACAT-T--ATGCACACAATATTTATCT----TAT-CTC-AAT---TA--TACC-AGTATTTTTGCA
gi|131088 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGGAAGCGATATGTTGCACCAACA----TACATC--AA---GCACAT-A--ATGCACACAATATTCATCT----TAT-CTC-AAA---CG--TACT-AGTATTTTTGCA
gi|131094 : aAAACCTCAAATGGAAGATTGGCCAACGCACTTCATATAGAAGAGATATGTCACGCCAACA----TACATC--AA---GCACAT-T--ATGCATACAACATTCATCT----TAT-CAC-AAA---TA--TACT-AGTATTTTTGCA
gi|131089 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGGAAGCAATATGTCGCGCCAAAA----TACATC--AA---GCACAT-A--ATGCACACAGTATTCATCT----TAT-CTC-AAA---TG--TACT-AGTATTTTTGCA
gi|131108 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGGAAGCGATATGTCGCGCCAACA----TACAGC--AA---GCACAT-T--ATGCACACAGTATT-ATCT----TAT-CTC-AAT---TA--TACC-AGCATTTTTGCA
gi|131090 : aAAACCTCAAATGGACGGTTGACCGACGCACTTCAAATGGAAGCGATATGTCGCGCCAACA----TAAATC--AA---GCACAT-A--ATGCATACAATATTCATGT----TAT-CTC-AAA---TG--TACT-AGTATTTTTGCA
gi|131096 : aAAACCTCAAATGGAGGATTGACTGATGTACTTCAAATGGAAGCTTTATGTCGCGCCAACA----TACTTC--AA---GCACAT-A--ATGCATACAATATTTATCT----TAT-CTC-AAA---TA--TACT-AGTATTTTTGCA
gi|131119 : aAAACCTCAAATGGAGGATTGGCTGACCCGTTTCAAATGGAAGCGATATGTCTCGCCAACA----TACATC--AA---GCACAT-T--ATGCATACAATATTAATCT----TAT-TTC-GAA---TA--TACT-AGTATTTTTGCA
gi|131080 : AAACCTCAAATGGAGGATAGGCCTACGGACTTCAAATGGAAGCGATATTTCCCGCCAACA----TACATC--AA---GCACAT-T--ATACACACAATATTCATCT----TAT-CTT-AAA---TA--TACT-AGTTTTTTTGCA
gi|131093 : aAAACCTCAAATGGAGGATTGACCGACGCATTTCAAATGGAAGCGATATGTCACGACAACA----TACATC--AA---GGACAT-A--ATGCATACAATATTCATCT----TAT-CTC-AAA---TG--TACT-AGTGTTTTTGCA
gi|131092 : aAAACCTCAAATGGAGGATTGAC-GACGCACTTCAAATGGAAACGATATGTTGCGCCAATA----TACATC--AA---GCACAT-T--ATGCATACAATATTCATCT----TAT-CTC-AAA---TATGTACT-AGTATTGTTGCA
gi|131095 : aAAACCTCAAATGGGGGATTGGCTGACGCACTTCAAATGGAAGCGATATATCGTGCCAACA----TACATC--AA---GCACAT-A--ATACACACAATATTCATCG----TAT-CTC-AAA---TG--TACT-AGTATTTTTGCA
gi|131087 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGGAAGCGATATGTCGCGCCAAAA----TACATC--AA---GCACAT-A--ATGCACACAATATTAATCT----TAT-CTC-AAA---TG--TACT-ATTATTCTTGCA
gi|131098 : aAAGCCTCAAATGGAGGATTGACCGACGCGCTTCAAATGGGAGTGATTTGTCGTGCCAACG----TACATC--AA---GAACAT-A--ATGCATACAATATTCATCT----TAT-CTC-AAA---TA--TGCT-AGTATTTTTGCA
gi|131091 : aAAACCTCAAATGGAGGATTGGTCAACGCACTTCAAATAGAAACGATATGTCAGGCCAACA----TACATC--AA---GCACAT-T--ATGCATACAATATTAATCT----TAT-CTC-AAA---AA--TACT-ACTA-TTTTGCA
gi|131097 : aAAACCTCAAATGGGAGATTGGCCAACGCACTTTAAATGGAAGCGCTATGTCATGCCAACA----TACCTC--AA---GCACAT-T--ATGCATACAATATTTATCT----TAT-CTC-AAA---TA--TACT-ACTATTTTT
gi|131081 : aAAACTTCAAATGGAGGAT-AGCCTACGGACTTCAAATGGAAGCGATATGTCGCGCCAACA----TACATC--AA---GCACAT-A--ATGCATACAATATTTGTCT----TAT-CTA-AAA---TG--TACT-AGTATTTTTACA
gi|131099 : aAAACCTGTAATGGAGGATTGACCGACGCAATTGAAATGGAAGCGATATGTCGCGCCAACA----TACATC--AA---GCACAT-A--ATGCATACAATATTCATCT----TAT-CTC-AAA---TG--TACT-AGTAATTTTTCA
gi|131110 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGGAAGCTATATGCCGCGCCAACA----TACAAC--AA---GCACAT-T--ATGCACACACTATTTATCT----TAT-CTC-AAT---TA--TAAT-ATTA-TTTTGCA
gi|131113 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGACAGCTTTATGTCGCGCCGACA----TACTTC--AA---GCACAT-A--ATGCATACAATATTCATCT----TAT-CTC-AAA---TA--TGCT-AGTATTTTTGCA
gi|131102 : aAAACCTCAAGTTGAGGATTGACCGACGCAATTCAAATGATAGCGATATGTCACGCCAACA----TACATCAAATCAAGCACAT-A--ATGCACACAATATTCATCT----TAT-CTC-AAA---TG--TACT-AGTATTTTTGCA
gi|131114 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGACAGCTTTATGTCGCGCCAAGT----TACATC--AA---GCACAT-T--ATGCATACAATATTTATCT----CAT-CTC-AAA---TA--TGCT-AGTATTTTTG
gi|131111 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGGAAGCGATATGTCGCGCCAACA----AACAAC--AA---GCACAT-T--ATGCACACAATATGTATCC----TAT-CTC-AAT---TAT-TAC--AATA-TTTTGCA
gi|131083 : aAAACCTCAAATGGAGGATTGGCTGAAGCACTTCAAATGAAAGTGATATATCACACCAACA----TACAAC--AA---GCACATATTAATGCCTACAATATTTATCT----TAT-CTC-AAA---TG--TACT-AGTATTTTTGCA
gi|131103 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGAAAGCAATATGTCGGGCCAACA----TACAGC--AA---GCACAT-A--ATGTACACAAAATTCATCT----TAT-TTC-AAAATTTG--TACT-AGTATTTTTGCA
gi|131082 : aAAACCTAAAATGATGGATTGACCGACACACTTCAAATGGAAGCGATATGTCGCGCCAACATAGTTACATC--AA---GCACAT-A--ATTCATACAATATTTATCT----CAT-CTC-AAA---TA--TACT-AGTA-TTTTGCA
gi|131085 : aAAACTTCAAATGGAAGATTGGCCAACGCACTTCAAATGGAACCAATATGTTGCGCAAACC----TACATCG-AT----TACAT-T--ATGCATACAATATTTATCT----CGT-CTC-AAA---TA--TACT-CGTTTTTTTGCA
gi|131100 : aAAACCTCAAATGGAGGATCGACTGACCCACTTCAAAGGGAAGCAATATGTTGCACCAACA----TACATC--AA---GCACAT-T--ATGCATACAATA-TAATCT----TAT-TTC-AAA---TA--TACT-AGTATACTTGCA
gi|131120 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTTAAATGGAAGCAATATGTCGCGCCAACA----TACA----A----GCACAT-T--ATGCACACACTATTTATCC----TAT-CTC-AAT---TAT-TAC--AATA-TTTTGCA
gi|131101 : AAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGTAAGCGATATGTCGTGCCAACA----TACATC--AA---GCACAT-A--ATGC--ACAATATAAATCT----ATT-CTC-AAA---TG--TACT-AGTATTCTTG
gi|131084 : aAAACCTCAAATGCAGGATAGGCCAACATACTTCAAAAGCAAGCAATATGTCGCACCAACA----TATATC--AA---GCACAT-T--ATGCATACAATATTTATCT----CAT-CTC-AAA---TA--TGCTAAACATTTTTG
gi|131104 : aAAACATCAAATGGAGGATTGGCCAAAGCAATTCAAATGGAACCGATGTGTTGCGCCAACA----TACACC--AA---GCACAT-T--ATGCATAAAGTACTTACCT----CAT-CTC-AAA---TA--TACT-AGTTATGTTGCA
gi|131112 : aAAACCTCAAATGGAGGACTGGCCTACGCATATCAAATGGAAGTGATATGTCGCGCCAACA----TACATC--AA---ACACAT-T--ATGCCTAAAACAT-----T----TAT-CTC-AAA---TG--TAAT-AGT-TTT
gi|131105 : aAAACCTCAAATGGAGGATTGGCCAAT--ACTTCAAAACAAACTAATATGTTACGCCAAGT----TACATC--AA---GCACAT-T--ATGCCTACAATATTTTTCT----CAT-CTC-AAA---GA--TGCT-ATTATTTTTGg
gi|131115 : aAAACATCAAATGGAGGATTGGCCAATGTACTTCAAATGGAAGC----------------------ACA--------------T-T--ATGCTTACAATAT-----T----TAT-CTC-AAA---TA--TACC-TGTATTTTTGCA
gi|131086 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCTAGTGGAAGC----------------------ACATT--AT---GC---------TG---ACAATAT-----T----TAT-CGC-AAA---TA--CACT-TGTATTTTTGCA
gi|131106 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATTGAAGC
gi|131121 : aAAATTTAAAATGGAAGATTGGCCAACGCTCTTTAAATGAATTCGATTTGTCGCACCAATA----TACAacattattcatctcaaatatacttgtatttttgca
gi|131122 : AAGCCTCAAATGGAGGATTGGCCAACACACTTCAGATGGA
gi|131123 : AACCTTAAATGGAGGATTGGCCAATGCACTTCAAATGGAAGCGAAATGTCGCGCCAACA----TACACC--AA---GCACAT-T--ATGCTTACAACTTTTATCC----TAT-CTC-AAA---TA--TACT-AGTATTTTTGCAtaaaacagcatgcatcacagaacataca
gi|131125 : AACCTCAAATGGAGGATTGGCCAAAGCACTTCAAATGGAAGCAATATGTCGCACCAACA----TAC-----------CCCAT-T--ATGCATACAGTATTTATCTCAGATATACTTCACA---TA--TTCT-AGTATTTTTGCA
gi|131124 : AACCTCAAATGGAGGATTGGCCGACACACTTCAAATGGAAGCG--ATGTTTAGCCAACA----TACATC--AA---GCACAT-T--ATGCATACAATATTTCTC-----TAT-TTC-GAA---TG--TCCT--GT-TTTTTG
gi|131116 : AACCTCAAATGGAGGCTTGACTGACGCACTTCAAATGGAAGCGATTTGTCGCGCCAACA----TACATA--A-----CACA
gi|131109 : agACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGGAAGCGATATGTCGCGCCAACA----TACAAC--AA---GCACAT-T--ATGCACATAATATTCATCT----TAT-CTC-AAA---TA--TAAC-AATA-TTTTGCA
gi|131126 : aatCCTCAAATGGAGGCTTGTCTGACGCACTTCAAATGGAAGTGATTTGTCGCGACAACA----AACAAC--A
gi|131117 : CCTCAAATGGATGCTTGGCTGACGCACTTCAAATGGAAGC-ATTTGTTGCACCAACA----TACA
gi|131127 : aaaagtCCTCAAATGGAGACTTGACTGACGCACTTCAAATGGAAGCGATTTTTTGCGCCAACaaatacaaaagtattcaaatggaggaatactgatgtactacaaatgcaataatat
gi|131128 : TCAAATGGAGGAAAGGCCTACGGACTTCAAATGGAAGCGCTATGTCGCGCCAACA----TACATC--AA---GCAAAT-T--ATGCACACAATATTCATCT----TAT-CTT-AAA---TA--TACT-AGTATTTTTGCAaca
gi|131129 : TCTAATGGAGGATTGGCCAACGCACTTCAAACGGAACCGATTTTTCGCGCCAATA----TACA
gi|131130 : CAAA-GGAGGATTGGCCAACACACTTCAAAAGAAAGCGATATGTCGCGCCAACA----TACACC--AA---GCACAT-A--ATGCTTTTATCTTTTATCT----TAT-CTC-AAA---TA--TTCT-AGTATTTTTGaaatcaa
gi|131131 : TTGGCCAATGCACTTAAAATGGAAGCGATATGTCGCGCCAACA----TACATC--AA---GCACAT-T--ATGCATACAATATTTGTCT----TAT-CTC-AAA---TA--TACT-AG-ATTTTTGCA
gi|131132 : TTGGCCAACGCACTCAAAATGTAAGCTATATGTCGCGCAAACA----TAAATC--AA---GCACAT-T--TTGCATACGATATT--TCT----TAT-CTC-AAA---TA--TGCT-AG-ATTTTTGCA
gi|131133 : TTTGCCAACGCACTTAAAATGGAAGCTATATGTCGCGCCAATA----TACATC--AA---GCACAT-T--ATTCATACAATATTTATCT----TAT-TTC-GAA---TG--TCCT-GTTGTTT
gi|131134 : GGCCAACGTATTTCAGATGGAAGCGATTTGTCACGCTAATA----TACAAA--AT----CAAA---------ATTTAATATTC--------TAT-CTC-AA
gi|131106 : ACCTCAAATGGAGG--AT-TG----GCCAATG----CACTTC--A------A-AT-TG-AAGCA--CATTATTCATCT----CA-------AA---TA--TACT-TGTATTTTTGCA
gi|131135 : aaaATCGAAGCGATATGTTGCGTCAACA----TACATC--AA---GCAGAT-T--ATGCATACA------------------------A---TA--TACT-AGTATTTTTGCA
Alignments
lowQualScore : 111 11 0 1111 44444 2222 3 333333 111 22 0
lowQualScore : ... .. . .... ..... .... . ...... ... .. .
lowQualScore : 222 00 7 5555 44444 2222 9 222222 555 88 8
consensus : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
Reference ( family-461 ) : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131080 : AAACCTCAAATGGAGGATAGGCCTACGGACTTCAAATGG---AAGCGATATT--TCCC-GCCAACA----TAC-----ATCAAGCACAT-T--ATACACACAATATTCATCT------TATCTTAAA---TA--TACT-AGTTTTTTTGCA
gi|131081 : aAAACTTCAAATGGAGGAT-AGCCTACGGACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-A--ATGCATACAATATTTGTCT------TATCTAAAA---TG--TACT-AGTATTTTTACA
gi|131082 : aAAACCTAAAATGATGGATTGACCGACACACTTCAAATGG---AAGCGATATG--TCGC-GCCAACATAGTTAC-----ATCAAGCACAT-A--ATTCATACAATATTTATCT------CATCTCAAA---TA--TACT-AGTA-TTTTGCA
gi|131083 : aAAACCTCAAATGGAGGATTGGCTGAAGCACTTCAAATGA---AAGTGATATA--TCAC-ACCAACA----TAC-----AACAAGCACATATTAATGCCTACAATATTTATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131084 : aAAACCTCAAATGCAGGATAGGCCAACATACTTCAAAAGC---AAGCAATATG--TCGC-ACCAACA----TAT-----ATCAAGCACAT-T--ATGCATACAATATTTATCT------CATCTCAAA---TA--TGCTAAACATTTTTG
gi|131085 : aAAACTTCAAATGGAAGATTGGCCAACGCACTTCAAATGG---AACCAATATG--TTGC-GCAAACC----TAC-----ATCGATTACAT-T--ATGCATACAATATTTATCT------CGTCTCAAA---TA--TACT-CGTTTTTTTGCA
gi|131086 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCTAGTGG---AAGC-----------------ACA----------------------T-T--ATGCTGACAATAT-----T------TATCGCAAA---TA--CACT-TGTATTTTTGCA
gi|131087 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAAAA----TAC-----ATCAAGCACAT-A--ATGCACACAATATTAATCT------TATCTCAAA---TG--TACT-ATTATTCTTGCA
gi|131088 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCGATATG--TTGC-ACCAACA----TAC-----ATCAAGCACAT-A--ATGCACACAATATTCATCT------TATCTCAAA---CG--TACT-AGTATTTTTGCA
gi|131089 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCAATATG--TCGC-GCCAAAA----TAC-----ATCAAGCACAT-A--ATGCACACAGTATTCATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131090 : aAAACCTCAAATGGACGGTTGACCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAA-----ATCAAGCACAT-A--ATGCATACAATATTCATGT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131091 : aAAACCTCAAATGGAGGATTGGTCAACGCACTTCAAATAG---AAACGATATG--TCAG-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTAATCT------TATCTCAAA---AA--TACT-ACTA-TTTTGCA
gi|131092 : aAAACCTCAAATGGAGGATTGAC-GACGCACTTCAAATGG---AAACGATATG--TTGC-GCCAATA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TATGTACT-AGTATTGTTGCA
gi|131093 : aAAACCTCAAATGGAGGATTGACCGACGCATTTCAAATGG---AAGCGATATG--TCAC-GACAACA----TAC-----ATCAAGGACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TG--TACT-AGTGTTTTTGCA
gi|131094 : aAAACCTCAAATGGAAGATTGGCCAACGCACTTCATATAG---AAGAGATATG--TCAC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAACATTCATCT------TATCACAAA---TA--TACT-AGTATTTTTGCA
gi|131095 : aAAACCTCAAATGGGGGATTGGCTGACGCACTTCAAATGG---AAGCGATATA--TCGT-GCCAACA----TAC-----ATCAAGCACAT-A--ATACACACAATATTCATCG------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131096 : aAAACCTCAAATGGAGGATTGACTGATGTACTTCAAATGG---AAGCTTTATG--TCGC-GCCAACA----TAC-----TTCAAGCACAT-A--ATGCATACAATATTTATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131097 : aAAACCTCAAATGGGAGATTGGCCAACGCACTTTAAATGG---AAGCGCTATG--TCAT-GCCAACA----TAC-----CTCAAGCACAT-T--ATGCATACAATATTTATCT------TATCTCAAA---TA--TACT-ACTATTTTT
gi|131098 : aAAGCCTCAAATGGAGGATTGACCGACGCGCTTCAAATGG---GAGTGATTTG--TCGT-GCCAACG----TAC-----ATCAAGAACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TA--TGCT-AGTATTTTTGCA
gi|131099 : aAAACCTGTAATGGAGGATTGACCGACGCAATTGAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TG--TACT-AGTAATTTTTCA
gi|131100 : aAAACCTCAAATGGAGGATCGACTGACCCACTTCAAAGGG---AAGCAATATG--TTGC-ACCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATA-TAATCT------TATTTCAAA---TA--TACT-AGTATACTTGCA
gi|131101 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGT---AAGCGATATG--TCGT-GCCAACA----TAC-----ATCAAGCACAT-A--ATGC--ACAATATAAATCT------ATTCTCAAA---TG--TACT-AGTATTCTTG
gi|131102 : aAAACCTCAAGTTGAGGATTGACCGACGCAATTCAAATGA---TAGCGATATG--TCAC-GCCAACA----TACATCAAATCAAGCACAT-A--ATGCACACAATATTCATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131103 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGA---AAGCAATATG--TCGG-GCCAACA----TAC-----AGCAAGCACAT-A--ATGTACACAAAATTCATCT------TATTTCAAAATTTG--TACT-AGTATTTTTGCA
gi|131104 : aAAACATCAAATGGAGGATTGGCCAAAGCAATTCAAATGG---AACCGATGTG--TTGC-GCCAACA----TAC-----ACCAAGCACAT-T--ATGCATAAAGTACTTACCT------CATCTCAAA---TA--TACT-AGTTATGTTGCA
gi|131105 : aAAACCTCAAATGGAGGATTGGCCAAT--ACTTCAAAACA---AACTAATATG--TTAC-GCCAAGT----TAC-----ATCAAGCACAT-T--ATGCCTACAATATTTTTCT------CATCTCAAA---GA--TGCT-ATTATTTTTG
gi|131106 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATTG---AAGC
gi|131106 : aACCTCAAATGG---AGG--AT-TG-------GCCAATG----CAC-----TTCAA----AT-TG-AAGCA--CATTATTCATCT-----------CAAA---TA--TACT-TGTATTTTTGCAacattattcatctcaaatatacttgtatttttgca
gi|131107 : aaaAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGTGATATG--TCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACACAATATTTATCT------TATCTCAAT---TA--TACC-AGTATTTTTGCA
gi|131108 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----AGCAAGCACAT-T--ATGCACACAGTATT-ATCT------TATCTCAAT---TA--TACC-AGCATTTTTGCA
gi|131109 : aACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACATAATATTCATCT------TATCTCAAA---TA--TAAC-AATA-TTTTGCA
gi|131110 : aatAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCTATATG--CCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACACACTATTTATCT------TATCTCAAT---TA--TAAT-ATTA-TTTTGCA
gi|131111 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----AAC-----AACAAGCACAT-T--ATGCACACAATATGTATCC------TATCTCAAT---TAT-TAC--AATA-TTTTGCA
gi|131112 : aAAACCTCAAATGGAGGACTGGCCTACGCATATCAAATGG---AAGTGATATG--TCGC-GCCAACA----TAC-----ATCAAACACAT-T--ATGCCTAAAACAT-----T------TATCTCAAA---TG--TAAT-AGT-TTT
gi|131113 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGA---CAGCTTTATG--TCGC-GCCGACA----TAC-----TTCAAGCACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TA--TGCT-AGTATTTTTGCAg
gi|131114 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGA---CAGCTTTATG--TCGC-GCCAAGT----TAC-----ATCAAGCACAT-T--ATGCATACAATATTTATCT------CATCTCAAA---TA--TGCT-AGTATTTTTG
gi|131115 : aAAACATCAAATGGAGGATTGGCCAATGTACTTCAAATGG---AAGC-----------------ACA----------------------T-T--ATGCTTACAATAT-----T------TATCTCAAA---TA--TACC-TGTATTTTTGCA
gi|131116 : aAACCTCAAATGGAGGCTTGACTGACGCACTTCAAATGG---AAGCGATTTG--TCGC-GCCAACA----TAC-----AT--AACACA
gi|131117 : agCCTCAAATGGATGCTTGGCTGACGCACTTCAAATGG---AAGC-ATTTG--TTGC-ACCAACA----TAC-----A--AAATACA
gi|131118 : aaaagtAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACG----TAC-----ATCATGCACAT-T--ATGCATACAATATTCATCT------TATCTTAAA---TA--TACT-AGTATTTTTGCAaaagtattcaaatggaggaatactgatgtactacaaatgcaataatat
gi|131119 : AAACCTCAAATGGAGGATTGGCTGACCCGTTTCAAATGG---AAGCGATATG--TCTC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTAATCT------TATTTCGAA---TA--TACT-AGTATTTTTGCA
gi|131120 : AAACCTCAAATGGAGGATTGGCCAACGCACTTTAAATGG---AAGCAATATG--TCGC-GCCAACA----TA--------CAAGCACAT-T--ATGCACACACTATTTATCC------TATCTCAAT---TAT-TAC--AATA-TTTTGCA
gi|131121 : AAATTTAAAATGGAAGATTGGCCAACGCTCTTTAAATGA---ATTCGATTTG--TCGC-ACCAATA----TAC-----A
gi|131122 : AAGCCTCAAATGGAGGATTGGCCAACACACTTCAGATGGATAAAACAGCATGCATCACAG--AACA----TAC-----A
gi|131123 : AACCTTAAATGGAGGATTGGCCAATGCACTTCAAATGG---AAGCGAAATG--TCGC-GCCAACA----TAC-----ACCAAGCACAT-T--ATGCTTACAACTTTTATCC------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131124 : AACCTCAAATGGAGGATTGGCCGACACACTTCAAATGG---AAGCG--ATG--TTTA-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATT--TCTC-----TATTTCGAA---TG--TCCT--GT-TTTTTG
gi|131125 : AACCTCAAATGGAGGATTGGCCAAAGCACTTCAAATGG---AAGCAATATG--TCGC-ACCAACA----TAC-----------CCCAT-T--ATGCATACAGTATTTATCTCAGATATACTTCACA---TA--TTCT-AGTATTTTTGCA
gi|131126 : CCTCAAATGGAGGCTTGTCTGACGCACTTCAAATGG---AAGTGATTTG--TCGC-GACAACA----AAC-----AACA
gi|131127 : CCTCAAATGGAGACTTGACTGACGCACTTCAAATGG---AAGCGATTTT--TTGC-GCCAACA----CA
gi|131128 : TCAAATGGAGGAAAGGCCTACGGACTTCAAATGG---AAGCGCTATG--TCGC-GCCAACA----TAC-----ATCAAGCAAAT-T--ATGCACACAATATTCATCT------TATCTTAAA---TA--TACT-AGTATTTTTGCA
gi|131129 : TCTAATGGAGGATTGGCCAACGCACTTCAAACGG---AACCGATTTT--TCGC-GCCAATA----TACAAA--ATCAA
gi|131130 : CAAA-GGAGGATTGGCCAACACACTTCAAAAGA---AAGCGATATG--TCGC-GCCAACA----TAC-----ACCAAGCACAT-A--ATGCTTTTATCTTTTATCT------TATCTCAAA---TA--TTCT-AGTATTTTTG
gi|131131 : TTGGCCAATGCACTTAAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTTGTCT------TATCTCAAA---TA--TACT-AG-ATTTTTGCA
gi|131132 : TTGGCCAACGCACTCAAAATGT---AAGCTATATG--TCGC-GCAAACA----TAA-----ATCAAGCACAT-T--TTGCATACGATATT--TCT------TATCTCAAA---TA--TGCT-AG-ATTTTTGCA
gi|131133 : TTTGCCAACGCACTTAAAATGG---AAGCTATATG--TCGC-GCCAATA----TAC-----ATCAAGCACAT-T--ATTCATACAATATTTATCT------TATTTCGAA---TG--TCCT-GTTGTTT
gi|131134 : GGCCAACGTATTTCAGATGG---AAGCGATTTG--TCAC-GCTAATA----TACAAA--ATCAAA---AT-T---------TAATATTC----------TATCTCAA
gi|131135 : ATCG---AAGCGATATG--TTGC-GTCAACA----TAC-----ATCAAGCAGAT-T--ATGCATAC------------------------AA---TA--TACT-AGTATTTTTGCA
Alignments
lowQualScore : 111 11 0 1111 44444 2222 3 333333 111 22 0
lowQualScore : ... .. . .... ..... .... . ...... ... .. .
lowQualScore : 222 00 7 5555 44444 2222 9 222222 555 88 8
consensus : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
Reference ( family-461 ) : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131080 : AAACCTCAAATGGAGGATAGGCCTACGGACTTCAAATGG---AAGCGATATT--TCCC-GCCAACA----TAC-----ATCAAGCACAT-T--ATACACACAATATTCATCT------TATCTTAAA---TA--TACT-AGTTTTTTTGCA
gi|131081 : aAAACTTCAAATGGAGGAT-AGCCTACGGACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-A--ATGCATACAATATTTGTCT------TATCTAAAA---TG--TACT-AGTATTTTTACA
gi|131082 : aAAACCTAAAATGATGGATTGACCGACACACTTCAAATGG---AAGCGATATG--TCGC-GCCAACATAGTTAC-----ATCAAGCACAT-A--ATTCATACAATATTTATCT------CATCTCAAA---TA--TACT-AGTA-TTTTGCA
gi|131083 : aAAACCTCAAATGGAGGATTGGCTGAAGCACTTCAAATGA---AAGTGATATA--TCAC-ACCAACA----TAC-----AACAAGCACATATTAATGCCTACAATATTTATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131084 : aAAACCTCAAATGCAGGATAGGCCAACATACTTCAAAAGC---AAGCAATATG--TCGC-ACCAACA----TAT-----ATCAAGCACAT-T--ATGCATACAATATTTATCT------CATCTCAAA---TA--TGCTAAACATTTTTG
gi|131085 : aAAACTTCAAATGGAAGATTGGCCAACGCACTTCAAATGG---AACCAATATG--TTGC-GCAAACC----TAC-----ATCGATTACAT-T--ATGCATACAATATTTATCT------CGTCTCAAA---TA--TACT-CGTTTTTTTGCA
gi|131086 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCTAGTGG---AAGC-----------------ACA----------------------T-T--ATGCTGACAATAT-----T------TATCGCAAA---TA--CACT-TGTATTTTTGCA
gi|131087 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAAAA----TAC-----ATCAAGCACAT-A--ATGCACACAATATTAATCT------TATCTCAAA---TG--TACT-ATTATTCTTGCA
gi|131088 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCGATATG--TTGC-ACCAACA----TAC-----ATCAAGCACAT-A--ATGCACACAATATTCATCT------TATCTCAAA---CG--TACT-AGTATTTTTGCA
gi|131089 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCAATATG--TCGC-GCCAAAA----TAC-----ATCAAGCACAT-A--ATGCACACAGTATTCATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131090 : aAAACCTCAAATGGACGGTTGACCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAA-----ATCAAGCACAT-A--ATGCATACAATATTCATGT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131091 : aAAACCTCAAATGGAGGATTGGTCAACGCACTTCAAATAG---AAACGATATG--TCAG-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTAATCT------TATCTCAAA---AA--TACT-ACTA-TTTTGCA
gi|131092 : aAAACCTCAAATGGAGGATTGAC-GACGCACTTCAAATGG---AAACGATATG--TTGC-GCCAATA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TATGTACT-AGTATTGTTGCA
gi|131093 : aAAACCTCAAATGGAGGATTGACCGACGCATTTCAAATGG---AAGCGATATG--TCAC-GACAACA----TAC-----ATCAAGGACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TG--TACT-AGTGTTTTTGCA
gi|131094 : aAAACCTCAAATGGAAGATTGGCCAACGCACTTCATATAG---AAGAGATATG--TCAC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAACATTCATCT------TATCACAAA---TA--TACT-AGTATTTTTGCA
gi|131095 : aAAACCTCAAATGGGGGATTGGCTGACGCACTTCAAATGG---AAGCGATATA--TCGT-GCCAACA----TAC-----ATCAAGCACAT-A--ATACACACAATATTCATCG------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131096 : aAAACCTCAAATGGAGGATTGACTGATGTACTTCAAATGG---AAGCTTTATG--TCGC-GCCAACA----TAC-----TTCAAGCACAT-A--ATGCATACAATATTTATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131097 : aAAACCTCAAATGGGAGATTGGCCAACGCACTTTAAATGG---AAGCGCTATG--TCAT-GCCAACA----TAC-----CTCAAGCACAT-T--ATGCATACAATATTTATCT------TATCTCAAA---TA--TACT-ACTATTTTT
gi|131098 : aAAGCCTCAAATGGAGGATTGACCGACGCGCTTCAAATGG---GAGTGATTTG--TCGT-GCCAACG----TAC-----ATCAAGAACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TA--TGCT-AGTATTTTTGCA
gi|131099 : aAAACCTGTAATGGAGGATTGACCGACGCAATTGAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TG--TACT-AGTAATTTTTCA
gi|131100 : aAAACCTCAAATGGAGGATCGACTGACCCACTTCAAAGGG---AAGCAATATG--TTGC-ACCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATA-TAATCT------TATTTCAAA---TA--TACT-AGTATACTTGCA
gi|131101 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGT---AAGCGATATG--TCGT-GCCAACA----TAC-----ATCAAGCACAT-A--ATGC--ACAATATAAATCT------ATTCTCAAA---TG--TACT-AGTATTCTTG
gi|131102 : aAAACCTCAAGTTGAGGATTGACCGACGCAATTCAAATGA---TAGCGATATG--TCAC-GCCAACA----TACATCAAATCAAGCACAT-A--ATGCACACAATATTCATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131103 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGA---AAGCAATATG--TCGG-GCCAACA----TAC-----AGCAAGCACAT-A--ATGTACACAAAATTCATCT------TATTTCAAAATTTG--TACT-AGTATTTTTGCA
gi|131104 : aAAACATCAAATGGAGGATTGGCCAAAGCAATTCAAATGG---AACCGATGTG--TTGC-GCCAACA----TAC-----ACCAAGCACAT-T--ATGCATAAAGTACTTACCT------CATCTCAAA---TA--TACT-AGTTATGTTGCA
gi|131105 : aAAACCTCAAATGGAGGATTGGCCAAT--ACTTCAAAACA---AACTAATATG--TTAC-GCCAAGT----TAC-----ATCAAGCACAT-T--ATGCCTACAATATTTTTCT------CATCTCAAA---GA--TGCT-ATTATTTTTG
gi|131106 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATTG---AAGC
gi|131106 : aACCTCAAATGG---AGG--AT-TG-------GCCAATG----CAC-----TTCAA----AT-TG-AAGCA--CATTATTCATCT-----------CAAA---TA--TACT-TGTATTTTTGCAacattattcatctcaaatatacttgtatttttgca
gi|131107 : aaaAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGTGATATG--TCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACACAATATTTATCT------TATCTCAAT---TA--TACC-AGTATTTTTGCA
gi|131108 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----AGCAAGCACAT-T--ATGCACACAGTATT-ATCT------TATCTCAAT---TA--TACC-AGCATTTTTGCA
gi|131109 : aACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACATAATATTCATCT------TATCTCAAA---TA--TAAC-AATA-TTTTGCA
gi|131110 : aatAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCTATATG--CCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACACACTATTTATCT------TATCTCAAT---TA--TAAT-ATTA-TTTTGCA
gi|131111 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----AAC-----AACAAGCACAT-T--ATGCACACAATATGTATCC------TATCTCAAT---TAT-TAC--AATA-TTTTGCA
gi|131112 : aAAACCTCAAATGGAGGACTGGCCTACGCATATCAAATGG---AAGTGATATG--TCGC-GCCAACA----TAC-----ATCAAACACAT-T--ATGCCTAAAACAT-----T------TATCTCAAA---TG--TAAT-AGT-TTT
gi|131113 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGA---CAGCTTTATG--TCGC-GCCGACA----TAC-----TTCAAGCACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TA--TGCT-AGTATTTTTGCAg
gi|131114 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGA---CAGCTTTATG--TCGC-GCCAAGT----TAC-----ATCAAGCACAT-T--ATGCATACAATATTTATCT------CATCTCAAA---TA--TGCT-AGTATTTTTG
gi|131115 : aAAACATCAAATGGAGGATTGGCCAATGTACTTCAAATGG---AAGC-----------------ACA----------------------T-T--ATGCTTACAATAT-----T------TATCTCAAA---TA--TACC-TGTATTTTTGCA
gi|131116 : aAACCTCAAATGGAGGCTTGACTGACGCACTTCAAATGG---AAGCGATTTG--TCGC-GCCAACA----TAC-----AT--AACACA
gi|131117 : agCCTCAAATGGATGCTTGGCTGACGCACTTCAAATGG---AAGC-ATTTG--TTGC-ACCAACA----TAC-----A--AAATACA
gi|131118 : aaaagtAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACG----TAC-----ATCATGCACAT-T--ATGCATACAATATTCATCT------TATCTTAAA---TA--TACT-AGTATTTTTGCAaaagtattcaaatggaggaatactgatgtactacaaatgcaataatat
gi|131119 : AAACCTCAAATGGAGGATTGGCTGACCCGTTTCAAATGG---AAGCGATATG--TCTC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTAATCT------TATTTCGAA---TA--TACT-AGTATTTTTGCA
gi|131120 : AAACCTCAAATGGAGGATTGGCCAACGCACTTTAAATGG---AAGCAATATG--TCGC-GCCAACA----TA--------CAAGCACAT-T--ATGCACACACTATTTATCC------TATCTCAAT---TAT-TAC--AATA-TTTTGCA
gi|131121 : AAATTTAAAATGGAAGATTGGCCAACGCTCTTTAAATGA---ATTCGATTTG--TCGC-ACCAATA----TAC-----A
gi|131122 : AAGCCTCAAATGGAGGATTGGCCAACACACTTCAGATGGATAAAACAGCATGCATCACAG--AACA----TAC-----A
gi|131123 : AACCTTAAATGGAGGATTGGCCAATGCACTTCAAATGG---AAGCGAAATG--TCGC-GCCAACA----TAC-----ACCAAGCACAT-T--ATGCTTACAACTTTTATCC------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131124 : AACCTCAAATGGAGGATTGGCCGACACACTTCAAATGG---AAGCG--ATG--TTTA-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATT--TCTC-----TATTTCGAA---TG--TCCT--GT-TTTTTG
gi|131125 : AACCTCAAATGGAGGATTGGCCAAAGCACTTCAAATGG---AAGCAATATG--TCGC-ACCAACA----TAC-----------CCCAT-T--ATGCATACAGTATTTATCTCAGATATACTTCACA---TA--TTCT-AGTATTTTTGCA
gi|131126 : CCTCAAATGGAGGCTTGTCTGACGCACTTCAAATGG---AAGTGATTTG--TCGC-GACAACA----AAC-----AACA
gi|131127 : CCTCAAATGGAGACTTGACTGACGCACTTCAAATGG---AAGCGATTTT--TTGC-GCCAACA----CA
gi|131128 : TCAAATGGAGGAAAGGCCTACGGACTTCAAATGG---AAGCGCTATG--TCGC-GCCAACA----TAC-----ATCAAGCAAAT-T--ATGCACACAATATTCATCT------TATCTTAAA---TA--TACT-AGTATTTTTGCA
gi|131129 : TCTAATGGAGGATTGGCCAACGCACTTCAAACGG---AACCGATTTT--TCGC-GCCAATA----TACAAA--ATCAA
gi|131130 : CAAA-GGAGGATTGGCCAACACACTTCAAAAGA---AAGCGATATG--TCGC-GCCAACA----TAC-----ACCAAGCACAT-A--ATGCTTTTATCTTTTATCT------TATCTCAAA---TA--TTCT-AGTATTTTTG
gi|131131 : TTGGCCAATGCACTTAAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTTGTCT------TATCTCAAA---TA--TACT-AG-ATTTTTGCA
gi|131132 : TTGGCCAACGCACTCAAAATGT---AAGCTATATG--TCGC-GCAAACA----TAA-----ATCAAGCACAT-T--TTGCATACGATATT--TCT------TATCTCAAA---TA--TGCT-AG-ATTTTTGCA
gi|131133 : TTTGCCAACGCACTTAAAATGG---AAGCTATATG--TCGC-GCCAATA----TAC-----ATCAAGCACAT-T--ATTCATACAATATTTATCT------TATTTCGAA---TG--TCCT-GTTGTTT
gi|131134 : GGCCAACGTATTTCAGATGG---AAGCGATTTG--TCAC-GCTAATA----TACAAA--ATCAAA---AT-T---------TAATATTC----------TATCTCAA
gi|131135 : ATCG---AAGCGATATG--TTGC-GTCAACA----TAC-----ATCAAGCAGAT-T--ATGCATAC------------------------AA---TA--TACT-AGTATTTTTGCA
blockSeqs : ATA TAGT ATCAA ATTA T CAGATA ATT TG
blockSeqs : . . AAA TG T C . T
blockSeqs : . . AAA A T . . T
blockSeqs : . . . A T . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T A . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . A C . . .
blockSeqs : . . . A C . . .
blockSeqs : . . . A A . . .
blockSeqs : . . . A C . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . A C . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . A T . . .
blockSeqs : . . . A C . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . A A . . .
blockSeqs : . . . A A . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . A C . . .
blockSeqs : . . . A T . . .
blockSeqs : . . . A T . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . A A . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T T . . .
blockSeqs : . . . T C . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . A . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . T . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons :
originalCons : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
finalCons : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
Alignments
lowQualScore : 111 11 0 1111 44444 2222 3 333333 111 22 0
lowQualScore : ... .. . .... ..... .... . ...... ... .. .
lowQualScore : 222 00 7 5555 44444 2222 9 222222 555 88 8
consensus : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
Reference ( family-461 ) : AAACCTCAAATGGAGGATTGGCCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131080 : AAACCTCAAATGGAGGATAGGCCTACGGACTTCAAATGG---AAGCGATATT--TCCC-GCCAACA----TAC-----ATCAAGCACAT-T--ATACACACAATATTCATCT------TATCTTAAA---TA--TACT-AGTTTTTTTGCA
gi|131081 : aAAACTTCAAATGGAGGAT-AGCCTACGGACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-A--ATGCATACAATATTTGTCT------TATCTAAAA---TG--TACT-AGTATTTTTACA
gi|131082 : aAAACCTAAAATGATGGATTGACCGACACACTTCAAATGG---AAGCGATATG--TCGC-GCCAACATAGTTAC-----ATCAAGCACAT-A--ATTCATACAATATTTATCT------CATCTCAAA---TA--TACT-AGTA-TTTTGCA
gi|131083 : aAAACCTCAAATGGAGGATTGGCTGAAGCACTTCAAATGA---AAGTGATATA--TCAC-ACCAACA----TAC-----AACAAGCACATATTAATGCCTACAATATTTATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131084 : aAAACCTCAAATGCAGGATAGGCCAACATACTTCAAAAGC---AAGCAATATG--TCGC-ACCAACA----TAT-----ATCAAGCACAT-T--ATGCATACAATATTTATCT------CATCTCAAA---TA--TGCTAAACATTTTTG
gi|131085 : aAAACTTCAAATGGAAGATTGGCCAACGCACTTCAAATGG---AACCAATATG--TTGC-GCAAACC----TAC-----ATCGATTACAT-T--ATGCATACAATATTTATCT------CGTCTCAAA---TA--TACT-CGTTTTTTTGCA
gi|131086 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCTAGTGG---AAGC-----------------ACA----------------------T-T--ATGCTGACAATAT-----T------TATCGCAAA---TA--CACT-TGTATTTTTGCA
gi|131087 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAAAA----TAC-----ATCAAGCACAT-A--ATGCACACAATATTAATCT------TATCTCAAA---TG--TACT-ATTATTCTTGCA
gi|131088 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCGATATG--TTGC-ACCAACA----TAC-----ATCAAGCACAT-A--ATGCACACAATATTCATCT------TATCTCAAA---CG--TACT-AGTATTTTTGCA
gi|131089 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGG---AAGCAATATG--TCGC-GCCAAAA----TAC-----ATCAAGCACAT-A--ATGCACACAGTATTCATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131090 : aAAACCTCAAATGGACGGTTGACCGACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAA-----ATCAAGCACAT-A--ATGCATACAATATTCATGT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131091 : aAAACCTCAAATGGAGGATTGGTCAACGCACTTCAAATAG---AAACGATATG--TCAG-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTAATCT------TATCTCAAA---AA--TACT-ACTA-TTTTGCA
gi|131092 : aAAACCTCAAATGGAGGATTGAC-GACGCACTTCAAATGG---AAACGATATG--TTGC-GCCAATA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTCATCT------TATCTCAAA---TATGTACT-AGTATTGTTGCA
gi|131093 : aAAACCTCAAATGGAGGATTGACCGACGCATTTCAAATGG---AAGCGATATG--TCAC-GACAACA----TAC-----ATCAAGGACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TG--TACT-AGTGTTTTTGCA
gi|131094 : aAAACCTCAAATGGAAGATTGGCCAACGCACTTCATATAG---AAGAGATATG--TCAC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAACATTCATCT------TATCACAAA---TA--TACT-AGTATTTTTGCA
gi|131095 : aAAACCTCAAATGGGGGATTGGCTGACGCACTTCAAATGG---AAGCGATATA--TCGT-GCCAACA----TAC-----ATCAAGCACAT-A--ATACACACAATATTCATCG------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131096 : aAAACCTCAAATGGAGGATTGACTGATGTACTTCAAATGG---AAGCTTTATG--TCGC-GCCAACA----TAC-----TTCAAGCACAT-A--ATGCATACAATATTTATCT------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131097 : aAAACCTCAAATGGGAGATTGGCCAACGCACTTTAAATGG---AAGCGCTATG--TCAT-GCCAACA----TAC-----CTCAAGCACAT-T--ATGCATACAATATTTATCT------TATCTCAAA---TA--TACT-ACTATTTTT
gi|131098 : aAAGCCTCAAATGGAGGATTGACCGACGCGCTTCAAATGG---GAGTGATTTG--TCGT-GCCAACG----TAC-----ATCAAGAACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TA--TGCT-AGTATTTTTGCA
gi|131099 : aAAACCTGTAATGGAGGATTGACCGACGCAATTGAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TG--TACT-AGTAATTTTTCA
gi|131100 : aAAACCTCAAATGGAGGATCGACTGACCCACTTCAAAGGG---AAGCAATATG--TTGC-ACCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATA-TAATCT------TATTTCAAA---TA--TACT-AGTATACTTGCA
gi|131101 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGT---AAGCGATATG--TCGT-GCCAACA----TAC-----ATCAAGCACAT-A--ATGC--ACAATATAAATCT------ATTCTCAAA---TG--TACT-AGTATTCTTG
gi|131102 : aAAACCTCAAGTTGAGGATTGACCGACGCAATTCAAATGA---TAGCGATATG--TCAC-GCCAACA----TACATCAAATCAAGCACAT-A--ATGCACACAATATTCATCT------TATCTCAAA---TG--TACT-AGTATTTTTGCA
gi|131103 : aAAACCTCAAATGGAGGATTGACCGACGCACTTCAAATGA---AAGCAATATG--TCGG-GCCAACA----TAC-----AGCAAGCACAT-A--ATGTACACAAAATTCATCT------TATTTCAAAATTTG--TACT-AGTATTTTTGCA
gi|131104 : aAAACATCAAATGGAGGATTGGCCAAAGCAATTCAAATGG---AACCGATGTG--TTGC-GCCAACA----TAC-----ACCAAGCACAT-T--ATGCATAAAGTACTTACCT------CATCTCAAA---TA--TACT-AGTTATGTTGCA
gi|131105 : aAAACCTCAAATGGAGGATTGGCCAAT--ACTTCAAAACA---AACTAATATG--TTAC-GCCAAGT----TAC-----ATCAAGCACAT-T--ATGCCTACAATATTTTTCT------CATCTCAAA---GA--TGCT-ATTATTTTTG
gi|131106 : aAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATTG---AAGC
gi|131106 : aACCTCAAATGG---AGG--AT-TG-------GCCAATG----CAC-----TTCAA----AT-TG-AAGCA--CATTATTCATCT-----------CAAA---TA--TACT-TGTATTTTTGCAacattattcatctcaaatatacttgtatttttgca
gi|131107 : aaaAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGTGATATG--TCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACACAATATTTATCT------TATCTCAAT---TA--TACC-AGTATTTTTGCA
gi|131108 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----AGCAAGCACAT-T--ATGCACACAGTATT-ATCT------TATCTCAAT---TA--TACC-AGCATTTTTGCA
gi|131109 : aACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACATAATATTCATCT------TATCTCAAA---TA--TAAC-AATA-TTTTGCA
gi|131110 : aatAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCTATATG--CCGC-GCCAACA----TAC-----AACAAGCACAT-T--ATGCACACACTATTTATCT------TATCTCAAT---TA--TAAT-ATTA-TTTTGCA
gi|131111 : aAAACCTCAAATGGAGGATTGGCCAACGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACA----AAC-----AACAAGCACAT-T--ATGCACACAATATGTATCC------TATCTCAAT---TAT-TAC--AATA-TTTTGCA
gi|131112 : aAAACCTCAAATGGAGGACTGGCCTACGCATATCAAATGG---AAGTGATATG--TCGC-GCCAACA----TAC-----ATCAAACACAT-T--ATGCCTAAAACAT-----T------TATCTCAAA---TG--TAAT-AGT-TTT
gi|131113 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGA---CAGCTTTATG--TCGC-GCCGACA----TAC-----TTCAAGCACAT-A--ATGCATACAATATTCATCT------TATCTCAAA---TA--TGCT-AGTATTTTTGCAg
gi|131114 : aAAACCTCGAATGGAGGATTGACTGATGCGCTTCAAATGA---CAGCTTTATG--TCGC-GCCAAGT----TAC-----ATCAAGCACAT-T--ATGCATACAATATTTATCT------CATCTCAAA---TA--TGCT-AGTATTTTTG
gi|131115 : aAAACATCAAATGGAGGATTGGCCAATGTACTTCAAATGG---AAGC-----------------ACA----------------------T-T--ATGCTTACAATAT-----T------TATCTCAAA---TA--TACC-TGTATTTTTGCA
gi|131116 : aAACCTCAAATGGAGGCTTGACTGACGCACTTCAAATGG---AAGCGATTTG--TCGC-GCCAACA----TAC-----AT--AACACA
gi|131117 : agCCTCAAATGGATGCTTGGCTGACGCACTTCAAATGG---AAGC-ATTTG--TTGC-ACCAACA----TAC-----A--AAATACA
gi|131118 : aaaagtAAACCTCAAATGGAGGATTGGCCAATGCACTTCAAATGG---AAGCGATATG--TCGC-GCCAACG----TAC-----ATCATGCACAT-T--ATGCATACAATATTCATCT------TATCTTAAA---TA--TACT-AGTATTTTTGCAaaagtattcaaatggaggaatactgatgtactacaaatgcaataatat
gi|131119 : AAACCTCAAATGGAGGATTGGCTGACCCGTTTCAAATGG---AAGCGATATG--TCTC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTAATCT------TATTTCGAA---TA--TACT-AGTATTTTTGCA
gi|131120 : AAACCTCAAATGGAGGATTGGCCAACGCACTTTAAATGG---AAGCAATATG--TCGC-GCCAACA----TA--------CAAGCACAT-T--ATGCACACACTATTTATCC------TATCTCAAT---TAT-TAC--AATA-TTTTGCA
gi|131121 : AAATTTAAAATGGAAGATTGGCCAACGCTCTTTAAATGA---ATTCGATTTG--TCGC-ACCAATA----TAC-----A
gi|131122 : AAGCCTCAAATGGAGGATTGGCCAACACACTTCAGATGGATAAAACAGCATGCATCACAG--AACA----TAC-----A
gi|131123 : AACCTTAAATGGAGGATTGGCCAATGCACTTCAAATGG---AAGCGAAATG--TCGC-GCCAACA----TAC-----ACCAAGCACAT-T--ATGCTTACAACTTTTATCC------TATCTCAAA---TA--TACT-AGTATTTTTGCA
gi|131124 : AACCTCAAATGGAGGATTGGCCGACACACTTCAAATGG---AAGCG--ATG--TTTA-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATT--TCTC-----TATTTCGAA---TG--TCCT--GT-TTTTTG
gi|131125 : AACCTCAAATGGAGGATTGGCCAAAGCACTTCAAATGG---AAGCAATATG--TCGC-ACCAACA----TAC-----------CCCAT-T--ATGCATACAGTATTTATCTCAGATATACTTCACA---TA--TTCT-AGTATTTTTGCA
gi|131126 : CCTCAAATGGAGGCTTGTCTGACGCACTTCAAATGG---AAGTGATTTG--TCGC-GACAACA----AAC-----AACA
gi|131127 : CCTCAAATGGAGACTTGACTGACGCACTTCAAATGG---AAGCGATTTT--TTGC-GCCAACA----CA
gi|131128 : TCAAATGGAGGAAAGGCCTACGGACTTCAAATGG---AAGCGCTATG--TCGC-GCCAACA----TAC-----ATCAAGCAAAT-T--ATGCACACAATATTCATCT------TATCTTAAA---TA--TACT-AGTATTTTTGCA
gi|131129 : TCTAATGGAGGATTGGCCAACGCACTTCAAACGG---AACCGATTTT--TCGC-GCCAATA----TACAAA--ATCAA
gi|131130 : CAAA-GGAGGATTGGCCAACACACTTCAAAAGA---AAGCGATATG--TCGC-GCCAACA----TAC-----ACCAAGCACAT-A--ATGCTTTTATCTTTTATCT------TATCTCAAA---TA--TTCT-AGTATTTTTG
gi|131131 : TTGGCCAATGCACTTAAAATGG---AAGCGATATG--TCGC-GCCAACA----TAC-----ATCAAGCACAT-T--ATGCATACAATATTTGTCT------TATCTCAAA---TA--TACT-AG-ATTTTTGCA
gi|131132 : TTGGCCAACGCACTCAAAATGT---AAGCTATATG--TCGC-GCAAACA----TAA-----ATCAAGCACAT-T--TTGCATACGATATT--TCT------TATCTCAAA---TA--TGCT-AG-ATTTTTGCA
gi|131133 : TTTGCCAACGCACTTAAAATGG---AAGCTATATG--TCGC-GCCAATA----TAC-----ATCAAGCACAT-T--ATTCATACAATATTTATCT------TATTTCGAA---TG--TCCT-GTTGTTT
gi|131134 : GGCCAACGTATTTCAGATGG---AAGCGATTTG--TCAC-GCTAATA----TACAAA--ATCAAA---AT-T---------TAATATTC----------TATCTCAA
gi|131135 : ATCG---AAGCGATATG--TTGC-GTCAACA----TAC-----ATCAAGCAGAT-T--ATGCATAC------------------------AA---TA--TACT-AGTATTTTTGCA