lowQualScore : 4 11 1111 444 3 333333 0 111 6666666666666666 0 00 0 0 5 111 55 0 0 0 0 0 22 11 2 1 111 1 44
lowQualScore : . .. .... ... . ...... . ... ................ . .. . . . ... .. . . . . . .. .. . . ... . ..
lowQualScore : 4 00 5555 111 6 000000 7 222 2222222222222222 7 99 7 7 4 222 66 8 8 8 8 8 11 22 0 8 999 2 00
consensus : ATACTGTGAAATCATTNA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CGN-TTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
Reference ( gi|84537 ) : ATACTGTGAAATCATTTA--TT----TT-T-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAG-TTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84535 : ATACTGGGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------GTT-TC--G-T-GG-TTTC---CAC-TTTAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84539 : ATACTGTGAAATCATTTA--TT----TT-C-A-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGAGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--aat
gi|84538 : ATACTATGAAATAATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCC---AAA-A--AAAA
gi|84544 : ATACTGTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-ATGGGGATTT-AA-ATTTGT--TAAAAACCAA-TT--A---AAA-A--AAAAaaat
gi|84543 : ATACTGTGAAATCATTAA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--A-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTT-GTGGGGACTT-AA-ATTCGT--TGAAACCCAA-TTTCC---AAA-A--AAtat
gi|84542 : ATACTGTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---AAC-TTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTAA---AAA-A--AAAA
gi|84546 : ATACTGTGAAAATATTTA--TT----AT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTCC---AAA-A--AAAAaa
gi|84548 : ATACACTGAAATCATTTA--TT----TT-T-G-T-A----G-GTATTA---A---------------ATT-TC--G-T-TG-TTTC---CAC-TTCAAAGAT-A-T-ATTT-GTGGGGACTT-AA-ATCCGT--TGAAAACCAA-TTTCA---AAaa
gi|84549 : ATATTGTGAAATCATTTA--TT----TT-C-G-T-GTCGGA-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAATGAC-A-T-ATTC-GTGGTGACTT-TA-ATTAGT--TGAAACCCAATTTTCA---AAA-A--AA
gi|84550 : ATTCTGTGAAATCATTAA--TT----TT-C-G-A-G----G-GTATTA---C---------------ATA-TC--A-T-GG-TTTT---TAT-TTCAAAGAC-A-T-ATTC-GTAGGGATTT-GA-ATTTGC--TGAAAACGAA-TTTCA---AAA-G--AAAAtaaaa
gi|84551 : ATATTGTGATATCATTTA--TT----TT-T-G-C-G----G-GTATTA---A---------------ATT-TC--G-T-GA-TTTC---CAC-TTCAATGAC-A-T-ATTC-GTGGGGATTT-AA-ATTCAT--Taa
gi|84552 : ACACTGTGAAATCATTTA--TT----TT-C-A-T-G----G-GTACTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-----ATTC-ATGAGGTCTG-AA-ATTC----------CAAA-TTTAA---AAA-A--AAAA
gi|84554 : ATACTGTGAAATCATTAA--TT----TT-C-G-C-T----G-GTATTA---A---------------TTT-TC--G-A-TG-TATT---CAG-TTCAAGGAC-A-T-ATTC-GTGAGGACTA-AG-TTTCTC--TGAAAACAAA-TTTTA---GAA-A--at
gi|84553 : ATACTGTGAGATCATTTA--TGAAGGTA-T-G-A-A----G-GTATGA---A---------------ATT-TC--A-A-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGGGGAC-----------T--TGAAACCCAA-TTTCC---AAA-A--AAA
gi|84555 : ATACTGTGAAATCATTAA--TT----TT-C-A-T-T----G-ATATTA---ATTTTCATTGATATTAATTGTC--A-T-TG-TTTT---TGG-TTCAAGGAC-A-T-ATTC-ATGGGGACTT-AA-TTTCAT--TGAAAATGAA-TTTTA---GAA-A--AAAAtaaa
gi|84556 : ATACTGTGAAATCATTCA--TT----TT-T-G-T-T----G-GGATTA---A---------------ATT-TC--G-T-TG-TTTT---TTG-TTCAAGTAC-A-T-ATTC-ATGGCAGTTT-AA-TTTCAT--TAAAAAGCAA-ATTGA---GAA-AGTAAAAa
gi|84558 : ATACTGTGAAATCATTAA--TT----TT-T-G-T-T----G-GTATTA---A---------------TTT-TC--GTT-GT-TTTT---TGG-TTCAAAGAC-A-T-ATTC-CTGGGAACTT-CA-TTTCAT--Taat
gi|84559 : ATACTGTGGAATCATATA--TT----TTCT-C-T-G----G-G-ATTT---G---------------ATT-T---G-T-TG-TTTTTTTCAGGTTTAAAGAC-A-T-ATTC-ATGGCGATTT-AA-ATTTGT--TGAAAACTAC-TT
gi|84560 : ATATTGTGAAATCATT-------------------------------A---A---------------ATT-T---G-T-G--TTT-----AG-TTCAAGGAC-A-T-ATTC-ATGGGGACAT-AA-TTTCGT--TGAAAACTAA-TTTGA---GAA-A--AAAA
gi|84557 : ATACAGTGAATTCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GA-TTTC---CAC-TACAAAGAC-C-T-ATT
gi|84561 : ATACTGTGAAATCATTAA--TT----TT-C-T-T-T----G-GTATTA---A---------------TTT-TC--A-T-TT-TTTT---TGG-TTTAAGGAT-G-T-ATTG-GTTGGGACTT-AA-TTTCGT--
gi|84564 : ACACTGTGAAATCATTTA--T-----------------------------------------------TT-TC--G-T-TG-TTTT---TGG-TTCAAGGAC-A-T-ATTC-GTGGGTACTT-AA-TTCCGT--T
gi|84562 : ATACTGTGAAATTGTT-A--TT----TT-TCG-T-T----G-GGATTA---A------------------------------TTTT---CA---TCAAGGTC-A-T-ATTC-ATTGGGACTT-AATATT-GT--TGAAAATTCA-TTTCA---GAATA--AAAA
gi|84563 : ATACTGTGAAATCATTAA--TT----TT-C-A-T-T----G-GGGCTA---C---------------ATT-TC--A-T-TG-TTTT---AAG-TTCAAAGGC-A-T-ATTC-AT--ATACAT-AA-TTTAGC--TGAAAa
gi|84565 : ATACTGTGAAATCCTTAA--CT----TT-C-G-T-T----G-GTATTA---A---------------TTT-TC--A-T-TG-TTTT---TGG-TTCAAGGAC-ATT-ATTC-
gi|84547 : ATACTGTGAAATCATTAA--TT----TT-C-GTT-G----G-GTACTA---A---------------TTT-TC--G-T-GG-ATTC---C
gi|84541 : ATACTGTGAAATCATTAA--TT----TT-T-G-T-GT---G-GTACTA---A---------------TTT-TC--G-T-GGATTTC---
gi|84566 : ATACTGTGAAATCATTAA--TT----TT-C-G-TGG----G-GTACTA---A---------------TTT-TC--G-T-GGATTTC---
gi|84540 : ATACTGTGAAATCATTAA--TT----TT-C-G-T-G----GAGTACTA---A---------------TTT-TC--G-T-GGATTTC---
gi|84536 : ATACTGTGAAATCATTAA--TT----TT-C-GTT-G----G-GTACTA---A---------------TTT-TC--G-T-GGATTTC---
gi|84545 : ATACTGTGAAATCATTAG--TT----TT-C-G-TGG----G-GTACTA---A---------------TTT-TC--G-T-GGATTTC---
gi|84567 : TACTGTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--AAA
gi|84571 : TACTGTGAAATAATTTA--TT----TT-C-G-T-G----G-GTATTA---T---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAtaat
gi|84569 : TACTGTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--C-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCTT--TGATAACCAA-TTTAA---AAA-A--AAAA
gi|84573 : TACTGTGAAATCATTTA--TT----TT-C-G-T-G----G-ATATTA---A---------------ATT-TT--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTTGGGACTT-AA-ATTCGT--TGAAAACCGA-TTTAA---AAA-AT-AAAAaa
gi|84574 : TACTGTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TT--G-T-GG-TTTC---CAC-TTTAAAGAC-A-T-AATC-TCGGGGACTT-CA-ATTCGT--TAAAAACCAA-TTTCA---AAA-A--AAt
gi|84575 : TACTGTGAAATCATTTA--TT----TT-G-G-T-G----G-GTATTT---A---------------ATT-TC--G-T-GG-TTTC---CAC-TTCAATGTC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCCAA-TTTCA---AAA-A--CAAA
gi|84576 : TATTGTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAC-ATCAAAGAC-----ATTC-ATGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTAA---AAA-T--AAAa
gi|84578 : TACTTTGAAATCATTTA--TT----TT-C-G-T-G----G-GTATTA---A---------------ATT-TC--G-T-GG-TTTC---CAT-TTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTCtaaat
gi|84577 : TACTGTGAAATTATTTA--TT----TT-C-G-C-T----G-GTATTA---A---------------ATT-TG--G-T-GA-TTTC---CAC-TTCAATGAC-A-T-ATTC-TTGGGGATTT-AA-ATTTAT--TGAAAATCAA-TTTAA---AAA-A--
gi|84580 : TACTGCGAAATCATTTA--TT----TT-T-A-T-T----G-GTATTA---A---------------TTT-TC--G-T-TG-TTTT---TGG-TTTAAGGAC-A-T-ACTC-GTGGGGACTT-TA-TTTCGT--TGAAAACAAA-TTT
gi|84579 : TACTGTGAAATCATTAA--TT----TT-C-G-T-T----G-GTATAA---A---------------TTT-TC--G-A-TG-TTTT---TTG-TTCAAAGAC-A-T-ATTC-GAGGAGATTT-AA-TTTCAT--TGAAAACAAA-TTTTACTTAAA-A--AAA
gi|84581 : TACTGGGAAGTCATTAA--TT----TT-C-G-T-T----G-GGATTA---A---------------ATT-TT--G-TTAA-TTTT-----G-TTCAACGGC-A-T-ATTC-GTGGAGACTT-AA-TTTTGT--TGAAAACAAA-TTTTA---GAA-A--AAAA
gi|84582 : TACTGTGAAATCATTAA--TT----TT-A-A-T-T----G-GGATTA--------------------------------G-TTTT---TAA-TTCAAATAC-A-T-ATTCAGT-GGAACTTAAA-ATTTGT--TGAAAACCAA-Taat
gi|84584 : TACTGTGAAATCATAAA--TT----TT-T-GCT-G----G-G-GTTA---G---------------TTT-TC--C-T-TA-TATT---TGG-T-CGAGGG--A-T-ATTC-ATTGGGACTT-TA-ATTTGG--TGAAAACCAA-GATGA---GAA-A--AA
gi|84583 : TACTGTGAAATCATTCA--TT----TT-T-GTT-G----G-GTACTA---A---------------TTT-TC--G-T-GGATTTC---
gi|84568 : TAATGTGAAATCATCAA--TT----TT-C-T-T-G----A-G-ATTG---A---------------ATT-TC--G-T-TG-TTTT---AAA-TTTCTGGTC-A-A-ATTC-AATAGGACTT-TA-TTTAAA--TAAAAACTAA-TTTTA---GAA-A--AA
gi|84572 : TACTGTGAAATCATTAA--TT----TT-C-GTT-G----G-GTACTA---A---------------TTT-TC--G-T-GGATTTC---taaa
gi|84570 : TACTGTGAAATCATTAA--TT----TT-C-G-TGG----G-GTACTA---A---------------TTT-TT--G-T-GGATTTC---
gi|84585 : ACTGTGGAATCATTTA--TT----TC-T-A-T-G----G-GTAATA---A---------------ATT-TT--G-T-GG-TTTC---CAC-TTCAAAGAC-A-T-ATTC-GTGTGGACTT-AA-ATATGT--TGAAAACAAA-T
gi|84586 : CTGTGAAATCATTTA--TT----TT-C-A-T-G----G-GTATTA---A---------------ATT-TC--A-T-GG-TTTC---CAC-TTTAAAGAC-A-T-GTTC-ACGGGGTCTT-AA-ATTCGG--TGAAACCCTA-TTTCC---AAA-A--AAAA
gi|84592 : TGTGAAAGCATGAA--TT----TT-T-------------TAT----------------------------------G-TTTT---TGG-TTCAAGGAT-A-T-ATTC-GTGGGGACTT-AA-TTTTGT--TGGGAAATAA-TTTTA---AAA-T--AAaat
gi|84588 : ttcttttcaTAAAAT-ATTAA--TT----TT-T-G-T-T----G-GAATTA---A---------------TTT-TC--T-T-TT-TTTT---TTG-TGCAAGGAC-A-T-ATTA-ATGGAAACTT-AA-TTTCTT--TGAAAACCAA-TTTGA---GAA-AT-AAAA
gi|84589 : TCATTTA--TT----TT-C-A-T-G----G-GTATTA---A---------------ACT-GC--G-T-GG-at
gi|84590 : ATTAA--TT----TC-T-G-T-T----G-GTATTA---A---------------TTT-TC--A-T-TG-TTTT---TGG-TTCAAAGAC-A-T-ATTT-GTGGGGAC---AA-ATTT-TAATGAAAA------TTCA---Aacttaaattcgttgaaactcaattttcaaaaaaaaa
gi|84591 : TTTAATTT----TT-C-A-T-G----G--TATTA---T---------------ATT-TT--T-T-TG-TTTT---TGG-TTAAAGGAC-A-T-ATTC-GTTGGGTCTT-AA-TTTCGT--TGAAAACGAA-TTTTA---GAA-A--AAAA
gi|84593 : ATTACATA---------------ATT-TTAAG-T-TG-TTTT---CTA-TTCAAGGACTA-TTATTC-TTGGGGACTT-GA-TATCGT--TGAAAAGCAA-TTTAA---GAA-A--AAAAtat
gi|84587 : ATCA---A---------------TTT-TC--G-T-TG-TTAT---TGG-TTCAAGGAC-A-T-ATTT-GTGTGAACTT-AA-TTTCGT--TGAAgt
gi|84594 : tgtgaaatcTT-TC--G-T-GT-TTT------G-TTCAAGGAG-T-T-ATTT-GTGGCGATTT-AA-TTTCAT--TGAAAACCAG-TTTGA---GAA-G--AAAA
gi|84589 : GGACTT-AA-ATTCGT--TGAAACTCAATTTTCA---AAA-A--AAAAaat
Alignments
lowQualScore : 1 6666666666666666 0 4 333333 0 111 1 00 1 5 1111 55 0 0 0 0 0 11 11 1 1 111 1 33
lowQualScore : . ................ . . ...... . ... . .. . . .... .. . . . . . .. .. . . ... . ..
lowQualScore : 7 0000000000000000 7 1 444444 7 222 7 99 3 3 4444 33 8 8 8 8 8 99 11 9 5 888 1 99
consensus : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
Reference ( family-438 ) : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCGNTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84535 : ATACTGGGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AGTTTC--G-TGG-TTT----CCACTTTAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84536 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGATTT----Caat
gi|84537 : ATACTGTGAAATCATTTAT----------------TTT-TG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCAGTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84538 : ATACTATGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCC---AAA-A--AAAA
gi|84539 : ATACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGAGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--aaat
gi|84540 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----GAGTACTA---ATTTTC--G-TGGATTT----C
gi|84541 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-GT---G-GTACTA---ATTTTC--G-TGGATTT----C
gi|84542 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CAACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTAA---AAA-A--AAAA
gi|84543 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--A-TGG-TTT----CCACTTCAAAGAC-A-T-ATTT-GTGGGGACTT-AA-ATTCGT--TGAAACCCAA-TTTCC---AAA-A--AAaa
gi|84544 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGATTT-AA-ATTTGT--TAAAAACCAA-TT--A---AAA-A--AAAA
gi|84545 : ATACTGTGAAATCATTAGT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGATTT----Ctat
gi|84546 : ATACTGTGAAAATATTTAT----------------TAT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTCC---AAA-A--AAAA
gi|84547 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGG-ATT----CCaa
gi|84548 : ATACACTGAAATCATTTAT----------------TTT-TG-T-A----G-GTATTA---AATTTC--G-TTG-TTT----CCACTTCAAAGAT-A-T-ATTT-GTGGGGACTT-AA-ATCCGT--TGAAAACCAA-TTTCA---AA
gi|84549 : ATATTGTGAAATCATTTAT----------------TTT-CG-T-GTCGGA-GTATTA---AATTTC--G-TGG-TTT----CCACTTCAATGAC-A-T-ATTC-GTGGTGACTT-TA-ATTAGT--TGAAACCCAATTTTCA---AAA-A--AA
gi|84550 : ATTCTGTGAAATCATTAAT----------------TTT-CG-A-G----G-GTATTA---CATATC--A-TGG-TTT----TTATTTCAAAGAC-A-T-ATTC-GTAGGGATTT-GA-ATTTGC--TGAAAACGAA-TTTCA---AAA-G--AAAAtaaaa
gi|84551 : ATATTGTGATATCATTTAT----------------TTT-TG-C-G----G-GTATTA---AATTTC--G-TGA-TTT----CCACTTCAATGAC-A-T-ATTC-GTGGGGATTT-AA-ATTCAT--Taa
gi|84552 : ACACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTACTA---AATTTC--G-TGG-TTT----CCACTTCAAAGAC-----ATTC-ATGAGGTCTG-AA-ATTC----------CAAA-TTTAA---AAA-A--AAAA
gi|84553 : ATACTGTGAGATCATTTATGAAG------------GTA-TG-A-A----G-GTATGA---AATTTC--A-AGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGAC-----------T--TGAAACCCAA-TTTCC---AAA-A--AAAat
gi|84554 : ATACTGTGAAATCATTAAT----------------TTT-CG-C-T----G-GTATTA---ATTTTC--G-ATG-TAT----TCAGTTCAAGGAC-A-T-ATTC-GTGAGGACTA-AG-TTTCTC--TGAAAACAAA-TTTTA---GAA-A--taaa
gi|84555 : ATACTGTGAAATCATTAATTTTCATTGATATTAATTTT-CA-T-T----G-ATATTA---ATTGTC--A-TTG-TTT----TTGGTTCAAGGAC-A-T-ATTC-ATGGGGACTT-AA-TTTCAT--TGAAAATGAA-TTTTA---GAA-A--AAAA
gi|84556 : ATACTGTGAAATCATTCAT----------------TTT-TG-T-T----G-GGATTA---AATTTC--G-TTG-TTT----TTTGTTCAAGTAC-A-T-ATTC-ATGGCAGTTT-AA-TTTCAT--TAAAAAGCAA-ATTGA---GAA-AGTAAAAa
gi|84557 : ATACAGTGAATTCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGA-TTT----CCACTACAAAGAC-C-T-ATTaat
gi|84558 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-T----G-GTATTA---ATTTTC--GTTGT-TTT----TTGGTTCAAAGAC-A-T-ATTC-CTGGGAACTT-CA-TTTCAT--T
gi|84559 : ATACTGTGGAATCATATAT----------------TTT-CTCT-G----G-G-ATTT---GATTT---G-TTG-TTTTTTTCAGGTTTAAAGAC-A-T-ATTC-ATGGCGATTT-AA-ATTTGT--TGAAAACTAC-TT
gi|84560 : ATATTGTGAAATCATT----------------------------------------A---AATTT---G-TG--TTT------AGTTCAAGGAC-A-T-ATTC-ATGGGGACAT-AA-TTTCGT--TGAAAACTAA-TTTGA---GAA-A--AAAA
gi|84561 : ATACTGTGAAATCATTAAT----------------TTT-CT-T-T----G-GTATTA---ATTTTC--A-TTT-TTT----TTGGTTTAAGGAT-G-T-ATTG-GTTGGGACTT-AA-TTTCGT--
gi|84562 : ATACTGTGAAATTGTTATT----------------TTT-CG-T-T----G-GGATTA---ATTTTC--A-T----------------CAAGGTC-A-T-ATTC-ATTGGGACTT-AATATT-GT--TGAAAATTCA-TTTCA---GAATA--AAAA
gi|84563 : ATACTGTGAAATCATTAAT----------------TTT-CA-T-T----G-GGGCTA---CATTTC--A-TTG-TTT----TAAGTTCAAAGGC-A-T-ATTC-AT--ATACAT-AA-TTTAGC--TGAAAa
gi|84564 : ACACTGTGAAATCATTTAT----------------TTT-CG-T---------T-------------------G-TTT----TTGGTTCAAGGAC-A-T-ATTC-GTGGGTACTT-AA-TTCCGT--T
gi|84565 : ATACTGTGAAATCCTTAAC----------------TTT-CG-T-T----G-GTATTA---ATTTTC--A-TTG-TTT----TTGGTTCAAGGAC-ATT-ATTC-
gi|84566 : ATACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGATTT----C
gi|84567 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--AAA
gi|84568 : TAATGTGAAATCATCAAT----------------TTT-CT-T-G----A-G-ATTG---AATTTC--G-TTG-TTT----TAAATTTCTGGTC-A-A-ATTC-AATAGGACTT-TA-TTTAAA--TAAAAACTAA-TTTTA---GAA-A--AAtaat
gi|84569 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--C-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCTT--TGATAACCAA-TTTAA---AAA-A--AAAAtaaa
gi|84570 : TACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTT--G-TGGATTT----Caa
gi|84571 : TACTGTGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---TATTTC--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AA
gi|84572 : TACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGATTT----C
gi|84573 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-ATATTA---AATTTT--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTTGGGACTT-AA-ATTCGT--TGAAAACCGA-TTTAA---AAA-AT-AAAA
gi|84574 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTT--G-TGG-TTT----CCACTTTAAAGAC-A-T-AATC-TCGGGGACTT-CA-ATTCGT--TAAAAACCAA-TTTCA---AAA-A--AAt
gi|84575 : TACTGTGAAATCATTTAT----------------TTT-GG-T-G----G-GTATTT---AATTTC--G-TGG-TTT----CCACTTCAATGTC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCCAA-TTTCA---AAA-A--CAAA
gi|84576 : TATTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCACATCAAAGAC-----ATTC-ATGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTAA---AAA-T--AAAa
gi|84577 : TACTGTGAAATTATTTAT----------------TTT-CG-C-T----G-GTATTA---AATTTG--G-TGA-TTT----CCACTTCAATGAC-A-T-ATTC-TTGGGGATTT-AA-ATTTAT--TGAAAATCAA-TTTAA---AAA-A--taaat
gi|84578 : TACTTTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-TTT----CCATTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTC
gi|84579 : TACTGTGAAATCATTAAT----------------TTT-CG-T-T----G-GTATAA---ATTTTC--GATGT-TTT----TTG-TTCAAAGAC-A-T-ATTC-GAGGAGATTT-AA-TTTCAT--TGAAAACAAA-TTTTACTTAAA-A--AAA
gi|84580 : TACTGCGAAATCATTTAT----------------TTT-TA-T-T----G-GTATTA---ATTTTC--G-TTG-TTT----TTGGTTTAAGGAC-A-T-ACTC-GTGGGGACTT-TA-TTTCGT--TGAAAACAAA-TTT
gi|84581 : TACTGGGAAGTCATTAAT----------------TTT-CG-T-T----G-GGATTA---AATTTT--G-TTA-ATT----TTG-TTCAACGGC-A-T-ATTC-GTGGAGACTT-AA-TTTTGT--TGAAAACAAA-TTTTA---GAA-A--AAAA
gi|84582 : TACTGTGAAATCATTAAT----------------TTT-AA-T-T----G-GGATTA---------------G-TTT----TTAATTCAAATAC-A-T-ATTCAGT-GGAACTTAAA-ATTTGT--TGAAAACCAA-Taat
gi|84583 : TACTGTGAAATCATTCAT----------------TTT-TGTT-G----G-GTACTA---ATTTTC--G-TGGATTT----C
gi|84584 : TACTGTGAAATCATAAAT----------------TTT-TGCT-G----G-G-GTTA---GTTTTC--C-TTA-TAT----TTGGT-CGAGGG--A-T-ATTC-ATTGGGACTT-TA-ATTTGG--TGAAAACCAA-GATGA---GAA-A--AA
gi|84585 : ACTGTGGAATCATTTAT----------------TTC-TA-T-G----G-GTAATA---AATTTT--G-TGG-TTT----CCACTTCAAAGAC-A-T-ATTC-GTGTGGACTT-AA-ATATGT--TGAAAACAAA-T
gi|84586 : CTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--A-TGG-TTT----CCACTTTAAAGAC-A-T-GTTC-ACGGGGTCTT-AA-ATTCGG--TGAAACCCTA-TTTCC---AAA-A--AAAA
gi|84587 : TGTGAAATCATCAAT----------------TTT-CG-T-T----G-TTATT---------------------------GGTTCAAGGAC-A-T-ATTT-GTGTGAACTT-AA-TTTCGT--TGAAaat
gi|84588 : TAAAAT-ATTAAT----------------TTT-TG-T-T----G-GAATTA---ATTTTC--T-TTT-TTT----TTTGTGCAAGGAC-A-T-ATTA-ATGGAAACTT-AA-TTTCTT--TGAAAACCAA-TTTGA---GAA-AT-AAAA
gi|84589 : TCATTTAT----------------TTT-CA-T-G----G-GTATTA---AACTGC--G-TGG-at
gi|84589 : GGACTT-AA-ATTCGT--TGAAACTCAATTTTCA---AAA-A--AAAAacttaaattcgttgaaactcaattttcaaaaaaaaa
gi|84590 : tcatttattttcatgggtattaaactgcgtATTAAT----------------TTC-TG-T-T----G-GTATTA---ATTTTC--A-TTG-TTT----TTGGTTCAAAGAC-A-T-ATTT-GTGGGGAC---AA-ATTT-TAATGAAAA------TTCA---A
gi|84591 : TTAAT----------------TTTTCA-T-G----G--TATTA---TATTTT--T-TTG-TTT----TTGGTTAAAGGAC-A-T-ATTC-GTTGGGTCTT-AA-TTTCGT--TGAAAACGAA-TTTTA---GAA-A--AAAA
gi|84592 : tTGTGAAAGCATGAAT----------------TTT-T------------TAT-----------------G-TTT----TTGGTTCAAGGAT-A-T-ATTC-GTGGGGACTT-AA-TTTTGT--TGGGAAATAA-TTTTA---AAA-T--AAtat
gi|84593 : ttcttttcaATTACATAATTTTAAG-TTG-TTT----TCTATTCAAGGACTA-TTATTC-TTGGGGACTT-GA-TATCGT--TGAAAAGCAA-TTTAA---GAA-A--AAAA
gi|84594 : TTTC--G-TGT-TTT-------GTTCAAGGAG-T-T-ATTT-GTGGCGATTT-AA-TTTCAT--TGAAAACCAG-TTTGA---GAA-G--AAAAgt
Alignments
lowQualScore : 1 6666666666666666 0 4 333333 0 111 1 00 1 5 0 1111 77 0 0 0 0 0 11 11 1 1 111 1 33
lowQualScore : . ................ . . ...... . ... . .. . . . .... .. . . . . . .. .. . . ... . ..
lowQualScore : 7 0000000000000000 7 1 444444 7 222 7 99 3 3 7 4444 77 8 8 8 8 8 99 11 9 5 888 1 99
consensus : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
Reference ( family-438 ) : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84535 : ATACTGGGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AGTTTC--G-TGG-T-TT----CCACTTTAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84536 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----Caat
gi|84537 : ATACTGTGAAATCATTTAT----------------TTT-TG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCAGTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84538 : ATACTATGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCC---AAA-A--AAAA
gi|84539 : ATACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGAGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--aaat
gi|84540 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----GAGTACTA---ATTTTC--G-TGGAT-TT----C
gi|84541 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-GT---G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84542 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CAACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTAA---AAA-A--AAAA
gi|84543 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--A-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTT-GTGGGGACTT-AA-ATTCGT--TGAAACCCAA-TTTCC---AAA-A--AAaa
gi|84544 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGATTT-AA-ATTTGT--TAAAAACCAA-TT--A---AAA-A--AAAA
gi|84545 : ATACTGTGAAATCATTAGT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGAT-TT----Ctat
gi|84546 : ATACTGTGAAAATATTTAT----------------TAT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTCC---AAA-A--AAAA
gi|84547 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGG-A-TT----CCaa
gi|84548 : ATACACTGAAATCATTTAT----------------TTT-TG-T-A----G-GTATTA---AATTTC--G-TTG-T-TT----CCACTTCAAAGAT-A-T-ATTT-GTGGGGACTT-AA-ATCCGT--TGAAAACCAA-TTTCA---AA
gi|84549 : ATATTGTGAAATCATTTAT----------------TTT-CG-T-GTCGGA-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAATGAC-A-T-ATTC-GTGGTGACTT-TA-ATTAGT--TGAAACCCAATTTTCA---AAA-A--AA
gi|84550 : ATTCTGTGAAATCATTAAT----------------TTT-CG-A-G----G-GTATTA---CATATC--A-TGG-T-TT----TTATTTCAAAGAC-A-T-ATTC-GTAGGGATTT-GA-ATTTGC--TGAAAACGAA-TTTCA---AAA-G--AAAAtaaaa
gi|84551 : ATATTGTGATATCATTTAT----------------TTT-TG-C-G----G-GTATTA---AATTTC--G-TGA-T-TT----CCACTTCAATGAC-A-T-ATTC-GTGGGGATTT-AA-ATTCAT--Taa
gi|84552 : ACACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTACTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-----ATTC-ATGAGGTCTG-AA-ATTC----------CAAA-TTTAA---AAA-A--AAAA
gi|84553 : ATACTGTGAGATCATTTATGAAG------------GTA-TG-A-A----G-GTATGA---AATTTC--A-AGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGAC-----------T--TGAAACCCAA-TTTCC---AAA-A--AAAat
gi|84554 : ATACTGTGAAATCATTAAT----------------TTT-CG-C-T----G-GTATTA---ATTTTC--G-ATG-T-AT----TCAGTTCAAGGAC-A-T-ATTC-GTGAGGACTA-AG-TTTCTC--TGAAAACAAA-TTTTA---GAA-A--taaa
gi|84555 : ATACTGTGAAATCATTAATTTTCATTGATATTAATTTT-CA-T-T----G-ATATTA---ATTGTC--A-TTG-T-TT----TTGGTTCAAGGAC-A-T-ATTC-ATGGGGACTT-AA-TTTCAT--TGAAAATGAA-TTTTA---GAA-A--AAAA
gi|84556 : ATACTGTGAAATCATTCAT----------------TTT-TG-T-T----G-GGATTA---AATTTC--G-TTG-T-TT----TTTGTTCAAGTAC-A-T-ATTC-ATGGCAGTTT-AA-TTTCAT--TAAAAAGCAA-ATTGA---GAA-AGTAAAAa
gi|84557 : ATACAGTGAATTCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGA-T-TT----CCACTACAAAGAC-C-T-ATTaat
gi|84558 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-T----G-GTATTA---ATTTTC--GTTGT-T-TT----TTGGTTCAAAGAC-A-T-ATTC-CTGGGAACTT-CA-TTTCAT--T
gi|84559 : ATACTGTGGAATCATATAT----------------TTT-CTCT-G----G-G-ATTT---GATTT---G-TTG-T-TTTTTTCAGGTTTAAAGAC-A-T-ATTC-ATGGCGATTT-AA-ATTTGT--TGAAAACTAC-TT
gi|84560 : ATATTGTGAAATCATT----------------------------------------A---AATTT---G-TG----TT----TAG-TTCAAGGAC-A-T-ATTC-ATGGGGACAT-AA-TTTCGT--TGAAAACTAA-TTTGA---GAA-A--AAAA
gi|84561 : ATACTGTGAAATCATTAAT----------------TTT-CT-T-T----G-GTATTA---ATTTTC--A-TTT-T-TT----TTGGTTTAAGGAT-G-T-ATTG-GTTGGGACTT-AA-TTTCGT--
gi|84562 : ATACTGTGAAATTGTTATT----------------TTT-CG-T-T----G-GGATTA---ATTTTC--A-T-----------------CAAGGTC-A-T-ATTC-ATTGGGACTT-AATATT-GT--TGAAAATTCA-TTTCA---GAATA--AAAA
gi|84563 : ATACTGTGAAATCATTAAT----------------TTT-CA-T-T----G-GGGCTA---CATTTC--A-TTG-T-TT----TAAGTTCAAAGGC-A-T-ATTC-AT--ATACAT-AA-TTTAGC--TGAAAa
gi|84564 : ACACTGTGAAATCATTTAT----------------TTT-CG-T---------T-------------------G-T-TT----TTGGTTCAAGGAC-A-T-ATTC-GTGGGTACTT-AA-TTCCGT--T
gi|84565 : ATACTGTGAAATCCTTAAC----------------TTT-CG-T-T----G-GTATTA---ATTTTC--A-TTG-T-TT----TTGGTTCAAGGAC-ATT-ATTC-
gi|84566 : ATACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84567 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--AAA
gi|84568 : TAATGTGAAATCATCAAT----------------TTT-CT-T-G----A-G-ATTG---AATTTC--G-TTG-T-TT----TAAATTTCTGGTC-A-A-ATTC-AATAGGACTT-TA-TTTAAA--TAAAAACTAA-TTTTA---GAA-A--AAtaat
gi|84569 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--C-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCTT--TGATAACCAA-TTTAA---AAA-A--AAAAtaaa
gi|84570 : TACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTT--G-TGGAT-TT----Caa
gi|84571 : TACTGTGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---TATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AA
gi|84572 : TACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84573 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-ATATTA---AATTTT--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTTGGGACTT-AA-ATTCGT--TGAAAACCGA-TTTAA---AAA-AT-AAAA
gi|84574 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTT--G-TGG-T-TT----CCACTTTAAAGAC-A-T-AATC-TCGGGGACTT-CA-ATTCGT--TAAAAACCAA-TTTCA---AAA-A--AAt
gi|84575 : TACTGTGAAATCATTTAT----------------TTT-GG-T-G----G-GTATTT---AATTTC--G-TGG-T-TT----CCACTTCAATGTC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCCAA-TTTCA---AAA-A--CAAA
gi|84576 : TATTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACATCAAAGAC-----ATTC-ATGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTAA---AAA-T--AAAa
gi|84577 : TACTGTGAAATTATTTAT----------------TTT-CG-C-T----G-GTATTA---AATTTG--G-TGA-T-TT----CCACTTCAATGAC-A-T-ATTC-TTGGGGATTT-AA-ATTTAT--TGAAAATCAA-TTTAA---AAA-A--taaat
gi|84578 : TACTTTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCATTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTC
gi|84579 : TACTGTGAAATCATTAAT----------------TTT-CG-T-T----G-GTATAA---ATTTTC--GATGT-T-TT----TTG-TTCAAAGAC-A-T-ATTC-GAGGAGATTT-AA-TTTCAT--TGAAAACAAA-TTTTACTTAAA-A--AAA
gi|84580 : TACTGCGAAATCATTTAT----------------TTT-TA-T-T----G-GTATTA---ATTTTC--G-TTG-T-TT----TTGGTTTAAGGAC-A-T-ACTC-GTGGGGACTT-TA-TTTCGT--TGAAAACAAA-TTT
gi|84581 : TACTGGGAAGTCATTAAT----------------TTT-CG-T-T----G-GGATTA---AATTTT--G-TTA-A-TT----TTG-TTCAACGGC-A-T-ATTC-GTGGAGACTT-AA-TTTTGT--TGAAAACAAA-TTTTA---GAA-A--AAAA
gi|84582 : TACTGTGAAATCATTAAT----------------TTT-AA-T-T----G-GGATTA---------------G-T-TT----TTAATTCAAATAC-A-T-ATTCAGT-GGAACTTAAA-ATTTGT--TGAAAACCAA-Taat
gi|84583 : TACTGTGAAATCATTCAT----------------TTT-TGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84584 : TACTGTGAAATCATAAAT----------------TTT-TGCT-G----G-G-GTTA---GTTTTC--C-TTA-TATT----TGG--TCGAGGG--A-T-ATTC-ATTGGGACTT-TA-ATTTGG--TGAAAACCAA-GATGA---GAA-A--AA
gi|84585 : ACTGTGGAATCATTTAT----------------TTC-TA-T-G----G-GTAATA---AATTTT--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGTGGACTT-AA-ATATGT--TGAAAACAAA-T
gi|84586 : CTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--A-TGG-T-TT----CCACTTTAAAGAC-A-T-GTTC-ACGGGGTCTT-AA-ATTCGG--TGAAACCCTA-TTTCC---AAA-A--AAAA
gi|84587 : TGTGAAATCATCAAT----------------TTT-CG-T-T----G-TTATT---------------GG-T-T-----------CAAGGAC-A-T-ATTT-GTGTGAACTT-AA-TTTCGT--TGAAaat
gi|84588 : TAAAAT-ATTAAT----------------TTT-TG-T-T----G-GAATTA---ATTTTC--T-TTT-T-TT----TTTGTGCAAGGAC-A-T-ATTA-ATGGAAACTT-AA-TTTCTT--TGAAAACCAA-TTTGA---GAA-AT-AAAA
gi|84589 : TCATTTAT----------------TTT-CA-T-G----G-GTATTA---AACTGC--G-TGG-at
gi|84589 : GGACTT-AA-ATTCGT--TGAAACTCAATTTTCA---AAA-A--AAAAacttaaattcgttgaaactcaattttcaaaaaaaaa
gi|84590 : tcatttattttcatgggtattaaactgcgtATTAAT----------------TTC-TG-T-T----G-GTATTA---ATTTTC--A-TTG-T-TT----TTGGTTCAAAGAC-A-T-ATTT-GTGGGGAC---AA-ATTT-TAATGAAAA------TTCA---A
gi|84591 : TTAAT----------------TTTTCA-T-G----G--TATTA---TATTTT--T-TTG-T-TT----TTGGTTAAAGGAC-A-T-ATTC-GTTGGGTCTT-AA-TTTCGT--TGAAAACGAA-TTTTA---GAA-A--AAAA
gi|84592 : tTGTGAAAGCATGAAT----------------TTT-T------------TAT-----------------G-T-TT----TTGGTTCAAGGAT-A-T-ATTC-GTGGGGACTT-AA-TTTTGT--TGGGAAATAA-TTTTA---AAA-T--AAtat
gi|84593 : ttcttttcaATTACATAATTTTAAG-TTG-T-TT----TCTATTCAAGGACTA-TTATTC-TTGGGGACTT-GA-TATCGT--TGAAAAGCAA-TTTAA---GAA-A--AAAA
gi|84594 : TTTC--G-TGT-T-TT------G-TTCAAGGAG-T-T-ATTT-GTGGCGATTT-AA-TTTCAT--TGAAAACCAG-TTTGA---GAA-G--AAAAgt
Alignments
lowQualScore : 1 6666666666666666 0 4 333333 0 111 1 00 1 5 0 1111 77 0 0 0 0 0 11 11 1 1 111 1 33
lowQualScore : . ................ . . ...... . ... . .. . . . .... .. . . . . . .. .. . . ... . ..
lowQualScore : 7 0000000000000000 7 1 444444 7 222 7 99 3 3 7 4444 77 8 8 8 8 8 99 11 9 5 888 1 99
consensus : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
Reference ( family-438 ) : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84535 : ATACTGGGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AGTTTC--G-TGG-T-TT----CCACTTTAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84536 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----Caat
gi|84537 : ATACTGTGAAATCATTTAT----------------TTT-TG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCAGTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84538 : ATACTATGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCC---AAA-A--AAAA
gi|84539 : ATACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGAGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--aaat
gi|84540 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----GAGTACTA---ATTTTC--G-TGGAT-TT----C
gi|84541 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-GT---G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84542 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CAACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTAA---AAA-A--AAAA
gi|84543 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--A-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTT-GTGGGGACTT-AA-ATTCGT--TGAAACCCAA-TTTCC---AAA-A--AAaa
gi|84544 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGATTT-AA-ATTTGT--TAAAAACCAA-TT--A---AAA-A--AAAA
gi|84545 : ATACTGTGAAATCATTAGT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGAT-TT----Ctat
gi|84546 : ATACTGTGAAAATATTTAT----------------TAT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTCC---AAA-A--AAAA
gi|84547 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGG-A-TT----CCaa
gi|84548 : ATACACTGAAATCATTTAT----------------TTT-TG-T-A----G-GTATTA---AATTTC--G-TTG-T-TT----CCACTTCAAAGAT-A-T-ATTT-GTGGGGACTT-AA-ATCCGT--TGAAAACCAA-TTTCA---AA
gi|84549 : ATATTGTGAAATCATTTAT----------------TTT-CG-T-GTCGGA-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAATGAC-A-T-ATTC-GTGGTGACTT-TA-ATTAGT--TGAAACCCAATTTTCA---AAA-A--AA
gi|84550 : ATTCTGTGAAATCATTAAT----------------TTT-CG-A-G----G-GTATTA---CATATC--A-TGG-T-TT----TTATTTCAAAGAC-A-T-ATTC-GTAGGGATTT-GA-ATTTGC--TGAAAACGAA-TTTCA---AAA-G--AAAAtaaaa
gi|84551 : ATATTGTGATATCATTTAT----------------TTT-TG-C-G----G-GTATTA---AATTTC--G-TGA-T-TT----CCACTTCAATGAC-A-T-ATTC-GTGGGGATTT-AA-ATTCAT--Taa
gi|84552 : ACACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTACTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-----ATTC-ATGAGGTCTG-AA-ATTC----------CAAA-TTTAA---AAA-A--AAAA
gi|84553 : ATACTGTGAGATCATTTATGAAG------------GTA-TG-A-A----G-GTATGA---AATTTC--A-AGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGAC-----------T--TGAAACCCAA-TTTCC---AAA-A--AAAat
gi|84554 : ATACTGTGAAATCATTAAT----------------TTT-CG-C-T----G-GTATTA---ATTTTC--G-ATG-T-AT----TCAGTTCAAGGAC-A-T-ATTC-GTGAGGACTA-AG-TTTCTC--TGAAAACAAA-TTTTA---GAA-A--taaa
gi|84555 : ATACTGTGAAATCATTAATTTTCATTGATATTAATTTT-CA-T-T----G-ATATTA---ATTGTC--A-TTG-T-TT----TTGGTTCAAGGAC-A-T-ATTC-ATGGGGACTT-AA-TTTCAT--TGAAAATGAA-TTTTA---GAA-A--AAAA
gi|84556 : ATACTGTGAAATCATTCAT----------------TTT-TG-T-T----G-GGATTA---AATTTC--G-TTG-T-TT----TTTGTTCAAGTAC-A-T-ATTC-ATGGCAGTTT-AA-TTTCAT--TAAAAAGCAA-ATTGA---GAA-AGTAAAAa
gi|84557 : ATACAGTGAATTCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGA-T-TT----CCACTACAAAGAC-C-T-ATTaat
gi|84558 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-T----G-GTATTA---ATTTTC--GTTGT-T-TT----TTGGTTCAAAGAC-A-T-ATTC-CTGGGAACTT-CA-TTTCAT--T
gi|84559 : ATACTGTGGAATCATATAT----------------TTT-CTCT-G----G-G-ATTT---GATTT---G-TTG-T-TTTTTTCAGGTTTAAAGAC-A-T-ATTC-ATGGCGATTT-AA-ATTTGT--TGAAAACTAC-TT
gi|84560 : ATATTGTGAAATCATT----------------------------------------A---AATTT---G-TG----TT----TAG-TTCAAGGAC-A-T-ATTC-ATGGGGACAT-AA-TTTCGT--TGAAAACTAA-TTTGA---GAA-A--AAAA
gi|84561 : ATACTGTGAAATCATTAAT----------------TTT-CT-T-T----G-GTATTA---ATTTTC--A-TTT-T-TT----TTGGTTTAAGGAT-G-T-ATTG-GTTGGGACTT-AA-TTTCGT--
gi|84562 : ATACTGTGAAATTGTTATT----------------TTT-CG-T-T----G-GGATTA---ATTTTC--A-T-----------------CAAGGTC-A-T-ATTC-ATTGGGACTT-AATATT-GT--TGAAAATTCA-TTTCA---GAATA--AAAA
gi|84563 : ATACTGTGAAATCATTAAT----------------TTT-CA-T-T----G-GGGCTA---CATTTC--A-TTG-T-TT----TAAGTTCAAAGGC-A-T-ATTC-AT--ATACAT-AA-TTTAGC--TGAAAa
gi|84564 : ACACTGTGAAATCATTTAT----------------TTT-CG-T---------T-------------------G-T-TT----TTGGTTCAAGGAC-A-T-ATTC-GTGGGTACTT-AA-TTCCGT--T
gi|84565 : ATACTGTGAAATCCTTAAC----------------TTT-CG-T-T----G-GTATTA---ATTTTC--A-TTG-T-TT----TTGGTTCAAGGAC-ATT-ATTC-
gi|84566 : ATACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84567 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--AAA
gi|84568 : TAATGTGAAATCATCAAT----------------TTT-CT-T-G----A-G-ATTG---AATTTC--G-TTG-T-TT----TAAATTTCTGGTC-A-A-ATTC-AATAGGACTT-TA-TTTAAA--TAAAAACTAA-TTTTA---GAA-A--AAtaat
gi|84569 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--C-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCTT--TGATAACCAA-TTTAA---AAA-A--AAAAtaaa
gi|84570 : TACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTT--G-TGGAT-TT----Caa
gi|84571 : TACTGTGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---TATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AA
gi|84572 : TACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84573 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-ATATTA---AATTTT--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTTGGGACTT-AA-ATTCGT--TGAAAACCGA-TTTAA---AAA-AT-AAAA
gi|84574 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTT--G-TGG-T-TT----CCACTTTAAAGAC-A-T-AATC-TCGGGGACTT-CA-ATTCGT--TAAAAACCAA-TTTCA---AAA-A--AAt
gi|84575 : TACTGTGAAATCATTTAT----------------TTT-GG-T-G----G-GTATTT---AATTTC--G-TGG-T-TT----CCACTTCAATGTC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCCAA-TTTCA---AAA-A--CAAA
gi|84576 : TATTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACATCAAAGAC-----ATTC-ATGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTAA---AAA-T--AAAa
gi|84577 : TACTGTGAAATTATTTAT----------------TTT-CG-C-T----G-GTATTA---AATTTG--G-TGA-T-TT----CCACTTCAATGAC-A-T-ATTC-TTGGGGATTT-AA-ATTTAT--TGAAAATCAA-TTTAA---AAA-A--taaat
gi|84578 : TACTTTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCATTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTC
gi|84579 : TACTGTGAAATCATTAAT----------------TTT-CG-T-T----G-GTATAA---ATTTTC--GATGT-T-TT----TTG-TTCAAAGAC-A-T-ATTC-GAGGAGATTT-AA-TTTCAT--TGAAAACAAA-TTTTACTTAAA-A--AAA
gi|84580 : TACTGCGAAATCATTTAT----------------TTT-TA-T-T----G-GTATTA---ATTTTC--G-TTG-T-TT----TTGGTTTAAGGAC-A-T-ACTC-GTGGGGACTT-TA-TTTCGT--TGAAAACAAA-TTT
gi|84581 : TACTGGGAAGTCATTAAT----------------TTT-CG-T-T----G-GGATTA---AATTTT--G-TTA-A-TT----TTG-TTCAACGGC-A-T-ATTC-GTGGAGACTT-AA-TTTTGT--TGAAAACAAA-TTTTA---GAA-A--AAAA
gi|84582 : TACTGTGAAATCATTAAT----------------TTT-AA-T-T----G-GGATTA---------------G-T-TT----TTAATTCAAATAC-A-T-ATTCAGT-GGAACTTAAA-ATTTGT--TGAAAACCAA-Taat
gi|84583 : TACTGTGAAATCATTCAT----------------TTT-TGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84584 : TACTGTGAAATCATAAAT----------------TTT-TGCT-G----G-G-GTTA---GTTTTC--C-TTA-TATT----TGG--TCGAGGG--A-T-ATTC-ATTGGGACTT-TA-ATTTGG--TGAAAACCAA-GATGA---GAA-A--AA
gi|84585 : ACTGTGGAATCATTTAT----------------TTC-TA-T-G----G-GTAATA---AATTTT--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGTGGACTT-AA-ATATGT--TGAAAACAAA-T
gi|84586 : CTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--A-TGG-T-TT----CCACTTTAAAGAC-A-T-GTTC-ACGGGGTCTT-AA-ATTCGG--TGAAACCCTA-TTTCC---AAA-A--AAAA
gi|84587 : TGTGAAATCATCAAT----------------TTT-CG-T-T----G-TTATT---------------GG-T-T-----------CAAGGAC-A-T-ATTT-GTGTGAACTT-AA-TTTCGT--TGAAaat
gi|84588 : TAAAAT-ATTAAT----------------TTT-TG-T-T----G-GAATTA---ATTTTC--T-TTT-T-TT----TTTGTGCAAGGAC-A-T-ATTA-ATGGAAACTT-AA-TTTCTT--TGAAAACCAA-TTTGA---GAA-AT-AAAA
gi|84589 : TCATTTAT----------------TTT-CA-T-G----G-GTATTA---AACTGC--G-TGG-at
gi|84589 : GGACTT-AA-ATTCGT--TGAAACTCAATTTTCA---AAA-A--AAAAacttaaattcgttgaaactcaattttcaaaaaaaaa
gi|84590 : tcatttattttcatgggtattaaactgcgtATTAAT----------------TTC-TG-T-T----G-GTATTA---ATTTTC--A-TTG-T-TT----TTGGTTCAAAGAC-A-T-ATTT-GTGGGGAC---AA-ATTT-TAATGAAAA------TTCA---A
gi|84591 : TTAAT----------------TTTTCA-T-G----G--TATTA---TATTTT--T-TTG-T-TT----TTGGTTAAAGGAC-A-T-ATTC-GTTGGGTCTT-AA-TTTCGT--TGAAAACGAA-TTTTA---GAA-A--AAAA
gi|84592 : tTGTGAAAGCATGAAT----------------TTT-T------------TAT-----------------G-T-TT----TTGGTTCAAGGAT-A-T-ATTC-GTGGGGACTT-AA-TTTTGT--TGGGAAATAA-TTTTA---AAA-T--AAtat
gi|84593 : ttcttttcaATTACATAATTTTAAG-TTG-T-TT----TCTATTCAAGGACTA-TTATTC-TTGGGGACTT-GA-TATCGT--TGAAAAGCAA-TTTAA---GAA-A--AAAA
gi|84594 : TTTC--G-TGT-T-TT------G-TTCAAGGAG-T-T-ATTT-GTGGCGATTT-AA-TTTCAT--TGAAAACCAG-TTTGA---GAA-G--AAAAgt
blockSeqs : A TTTCATTGATATTAAT T GTCGG CAT T T A TTTT AG TA AA T C CTT T GT
blockSeqs : T GAAG T GT . A A A . AC A . T C . . T
blockSeqs : T . C GG . A . A . AC A . . C . . T
blockSeqs : T . T GG . A . A . AC A . . A . . .
blockSeqs : A . T GG . T . A . AC A . . C . . .
blockSeqs : A . C G . T . A . AC A . . C . . .
blockSeqs : T . . G . A . A . AC A . . C . . .
blockSeqs : A . . G . A . A . AC A . . C . . .
blockSeqs : T . . G . A . . . AC A . . C . . .
blockSeqs : A . . G . T . . . AT A . . A . . .
blockSeqs : T . . G . A . . . AC A . . C . . .
blockSeqs : A . . G . T . . . AC A . . T . . .
blockSeqs : T . . G . A . . . AC A . . T . . .
blockSeqs : T . . G . A . . . AG T . . G . . .
blockSeqs : A . . G . A . . . GG T . . G . . .
blockSeqs : T . . A . A . . . TG T . . C . . .
blockSeqs : T . . G . A . . . AC T . . C . . .
blockSeqs : T . . G . A . . . GG A . . T . . .
blockSeqs : A . . G . T . . . GG T . . A . . .
blockSeqs : A . . A . T . . . GG T . . C . . .
blockSeqs : C . . T . A . . . AG T . . A . . .
blockSeqs : T . . T . A . . . GG T . . C . . .
blockSeqs : A . . T . T . . . GG A . . C . . .
blockSeqs : T . . G . A . . . AC T . . A . . .
blockSeqs : A . . T . A . . . AA A . . A . . .
blockSeqs : A . . G . T . . . AC A . . T . . .
blockSeqs : A . . T . T . . . AC A . . T . . .
blockSeqs : T . . T . A . . . AC A . . G . . .
blockSeqs : A . . T . T . . . AC A . . C . . .
blockSeqs : A . . T . T . . . AC A . . G . . .
blockSeqs : T . . G . A . . . AC A . . C . . .
blockSeqs : A . . G . A . . . AC A . . C . . .
blockSeqs : T . . G . A . . . AT T . . T . . .
blockSeqs : A . . G . T . . . GG T . . T . . .
blockSeqs : T . . G . A . . . AA T . . A .
blockSeqs : A . . G . T . . . AC A . . G .
blockSeqs : T . . G . A . . . AC A . . . .
blockSeqs : T . . G . A . . . TG A . .
blockSeqs : T . . G . A . . . GG A . .
blockSeqs : T . . T . A . . . GG T . .
blockSeqs : T . . G . A . . . GG T . .
blockSeqs : T . . T . A . . . TA A .
blockSeqs : A . . T . T . . . G A .
blockSeqs : T . . T . T . . . G T .
blockSeqs : A . . T . A . . . G T .
blockSeqs : A . . G . T . . . G T .
blockSeqs : C . . G . T . . . G T .
blockSeqs : A . . G . A . . . . .
blockSeqs : T . . G . A . . . .
blockSeqs : T . . T . T . . .
blockSeqs : A . . T . A . . .
blockSeqs : A . . G . T . . .
blockSeqs : T . . T . A . . .
blockSeqs : A . . G . A . . .
blockSeqs : A . . . . . . . .
blockSeqs : A . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
finalCons : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
Alignments
lowQualScore : 1 6666666666666666 0 4 333333 0 111 1 00 1 5 0 1111 77 0 0 0 0 0 11 11 1 1 111 1 33
lowQualScore : . ................ . . ...... . ... . .. . . . .... .. . . . . . .. .. . . ... . ..
lowQualScore : 7 0000000000000000 7 1 444444 7 222 7 99 3 3 7 4444 77 8 8 8 8 8 99 11 9 5 888 1 99
consensus : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
Reference ( family-438 ) : ATACTGTGAAATCATTNAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCGCTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84535 : ATACTGGGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AGTTTC--G-TGG-T-TT----CCACTTTAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84536 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----Caat
gi|84537 : ATACTGTGAAATCATTTAT----------------TTT-TG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCAGTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AAA-A--AAAA
gi|84538 : ATACTATGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCC---AAA-A--AAAA
gi|84539 : ATACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGAGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--aaat
gi|84540 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----GAGTACTA---ATTTTC--G-TGGAT-TT----C
gi|84541 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-GT---G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84542 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CAACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTAA---AAA-A--AAAA
gi|84543 : ATACTGTGAAATCATTAAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--A-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTT-GTGGGGACTT-AA-ATTCGT--TGAAACCCAA-TTTCC---AAA-A--AAaa
gi|84544 : ATACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-ATGGGGATTT-AA-ATTTGT--TAAAAACCAA-TT--A---AAA-A--AAAA
gi|84545 : ATACTGTGAAATCATTAGT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGAT-TT----Ctat
gi|84546 : ATACTGTGAAAATATTTAT----------------TAT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCAAA-TTTCC---AAA-A--AAAA
gi|84547 : ATACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGG-A-TT----CCaa
gi|84548 : ATACACTGAAATCATTTAT----------------TTT-TG-T-A----G-GTATTA---AATTTC--G-TTG-T-TT----CCACTTCAAAGAT-A-T-ATTT-GTGGGGACTT-AA-ATCCGT--TGAAAACCAA-TTTCA---AA
gi|84549 : ATATTGTGAAATCATTTAT----------------TTT-CG-T-GTCGGA-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAATGAC-A-T-ATTC-GTGGTGACTT-TA-ATTAGT--TGAAACCCAATTTTCA---AAA-A--AA
gi|84550 : ATTCTGTGAAATCATTAAT----------------TTT-CG-A-G----G-GTATTA---CATATC--A-TGG-T-TT----TTATTTCAAAGAC-A-T-ATTC-GTAGGGATTT-GA-ATTTGC--TGAAAACGAA-TTTCA---AAA-G--AAAAtaaaa
gi|84551 : ATATTGTGATATCATTTAT----------------TTT-TG-C-G----G-GTATTA---AATTTC--G-TGA-T-TT----CCACTTCAATGAC-A-T-ATTC-GTGGGGATTT-AA-ATTCAT--Taa
gi|84552 : ACACTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTACTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-----ATTC-ATGAGGTCTG-AA-ATTC----------CAAA-TTTAA---AAA-A--AAAA
gi|84553 : ATACTGTGAGATCATTTATGAAG------------GTA-TG-A-A----G-GTATGA---AATTTC--A-AGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGAC-----------T--TGAAACCCAA-TTTCC---AAA-A--AAAat
gi|84554 : ATACTGTGAAATCATTAAT----------------TTT-CG-C-T----G-GTATTA---ATTTTC--G-ATG-T-AT----TCAGTTCAAGGAC-A-T-ATTC-GTGAGGACTA-AG-TTTCTC--TGAAAACAAA-TTTTA---GAA-A--taaa
gi|84555 : ATACTGTGAAATCATTAATTTTCATTGATATTAATTTT-CA-T-T----G-ATATTA---ATTGTC--A-TTG-T-TT----TTGGTTCAAGGAC-A-T-ATTC-ATGGGGACTT-AA-TTTCAT--TGAAAATGAA-TTTTA---GAA-A--AAAA
gi|84556 : ATACTGTGAAATCATTCAT----------------TTT-TG-T-T----G-GGATTA---AATTTC--G-TTG-T-TT----TTTGTTCAAGTAC-A-T-ATTC-ATGGCAGTTT-AA-TTTCAT--TAAAAAGCAA-ATTGA---GAA-AGTAAAAa
gi|84557 : ATACAGTGAATTCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGA-T-TT----CCACTACAAAGAC-C-T-ATTaat
gi|84558 : ATACTGTGAAATCATTAAT----------------TTT-TG-T-T----G-GTATTA---ATTTTC--GTTGT-T-TT----TTGGTTCAAAGAC-A-T-ATTC-CTGGGAACTT-CA-TTTCAT--T
gi|84559 : ATACTGTGGAATCATATAT----------------TTT-CTCT-G----G-G-ATTT---GATTT---G-TTG-T-TTTTTTCAGGTTTAAAGAC-A-T-ATTC-ATGGCGATTT-AA-ATTTGT--TGAAAACTAC-TT
gi|84560 : ATATTGTGAAATCATT----------------------------------------A---AATTT---G-TG----TT----TAG-TTCAAGGAC-A-T-ATTC-ATGGGGACAT-AA-TTTCGT--TGAAAACTAA-TTTGA---GAA-A--AAAA
gi|84561 : ATACTGTGAAATCATTAAT----------------TTT-CT-T-T----G-GTATTA---ATTTTC--A-TTT-T-TT----TTGGTTTAAGGAT-G-T-ATTG-GTTGGGACTT-AA-TTTCGT--
gi|84562 : ATACTGTGAAATTGTTATT----------------TTT-CG-T-T----G-GGATTA---ATTTTC--A-T-----------------CAAGGTC-A-T-ATTC-ATTGGGACTT-AATATT-GT--TGAAAATTCA-TTTCA---GAATA--AAAA
gi|84563 : ATACTGTGAAATCATTAAT----------------TTT-CA-T-T----G-GGGCTA---CATTTC--A-TTG-T-TT----TAAGTTCAAAGGC-A-T-ATTC-AT--ATACAT-AA-TTTAGC--TGAAAa
gi|84564 : ACACTGTGAAATCATTTAT----------------TTT-CG-T---------T-------------------G-T-TT----TTGGTTCAAGGAC-A-T-ATTC-GTGGGTACTT-AA-TTCCGT--T
gi|84565 : ATACTGTGAAATCCTTAAC----------------TTT-CG-T-T----G-GTATTA---ATTTTC--A-TTG-T-TT----TTGGTTCAAGGAC-ATT-ATTC-
gi|84566 : ATACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84567 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTCA---AAA-A--AAA
gi|84568 : TAATGTGAAATCATCAAT----------------TTT-CT-T-G----A-G-ATTG---AATTTC--G-TTG-T-TT----TAAATTTCTGGTC-A-A-ATTC-AATAGGACTT-TA-TTTAAA--TAAAAACTAA-TTTTA---GAA-A--AAtaat
gi|84569 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--C-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCTT--TGATAACCAA-TTTAA---AAA-A--AAAAtaaa
gi|84570 : TACTGTGAAATCATTAAT----------------TTT-CG-TGG----G-GTACTA---ATTTTT--G-TGGAT-TT----Caa
gi|84571 : TACTGTGAAATAATTTAT----------------TTT-CG-T-G----G-GTATTA---TATTTC--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGGGGACTT-AA-ATTCGT--TGAAAACCAA-TTTCA---AA
gi|84572 : TACTGTGAAATCATTAAT----------------TTT-CGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84573 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-ATATTA---AATTTT--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTTGGGACTT-AA-ATTCGT--TGAAAACCGA-TTTAA---AAA-AT-AAAA
gi|84574 : TACTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTT--G-TGG-T-TT----CCACTTTAAAGAC-A-T-AATC-TCGGGGACTT-CA-ATTCGT--TAAAAACCAA-TTTCA---AAA-A--AAt
gi|84575 : TACTGTGAAATCATTTAT----------------TTT-GG-T-G----G-GTATTT---AATTTC--G-TGG-T-TT----CCACTTCAATGTC-A-T-ATTC-GTGGGGTCTT-AA-ATTCGT--TGAAACCCAA-TTTCA---AAA-A--CAAA
gi|84576 : TATTGTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCACATCAAAGAC-----ATTC-ATGGGGACTT-AA-ATTTGT--TGAAAACCAA-TTTAA---AAA-T--AAAa
gi|84577 : TACTGTGAAATTATTTAT----------------TTT-CG-C-T----G-GTATTA---AATTTG--G-TGA-T-TT----CCACTTCAATGAC-A-T-ATTC-TTGGGGATTT-AA-ATTTAT--TGAAAATCAA-TTTAA---AAA-A--taaat
gi|84578 : TACTTTGAAATCATTTAT----------------TTT-CG-T-G----G-GTATTA---AATTTC--G-TGG-T-TT----CCATTTCAAAGAC-A-T-ATTC-ATGGGGACTT-AA-ATTC
gi|84579 : TACTGTGAAATCATTAAT----------------TTT-CG-T-T----G-GTATAA---ATTTTC--GATGT-T-TT----TTG-TTCAAAGAC-A-T-ATTC-GAGGAGATTT-AA-TTTCAT--TGAAAACAAA-TTTTACTTAAA-A--AAA
gi|84580 : TACTGCGAAATCATTTAT----------------TTT-TA-T-T----G-GTATTA---ATTTTC--G-TTG-T-TT----TTGGTTTAAGGAC-A-T-ACTC-GTGGGGACTT-TA-TTTCGT--TGAAAACAAA-TTT
gi|84581 : TACTGGGAAGTCATTAAT----------------TTT-CG-T-T----G-GGATTA---AATTTT--G-TTA-A-TT----TTG-TTCAACGGC-A-T-ATTC-GTGGAGACTT-AA-TTTTGT--TGAAAACAAA-TTTTA---GAA-A--AAAA
gi|84582 : TACTGTGAAATCATTAAT----------------TTT-AA-T-T----G-GGATTA---------------G-T-TT----TTAATTCAAATAC-A-T-ATTCAGT-GGAACTTAAA-ATTTGT--TGAAAACCAA-Taat
gi|84583 : TACTGTGAAATCATTCAT----------------TTT-TGTT-G----G-GTACTA---ATTTTC--G-TGGAT-TT----C
gi|84584 : TACTGTGAAATCATAAAT----------------TTT-TGCT-G----G-G-GTTA---GTTTTC--C-TTA-TATT----TGG--TCGAGGG--A-T-ATTC-ATTGGGACTT-TA-ATTTGG--TGAAAACCAA-GATGA---GAA-A--AA
gi|84585 : ACTGTGGAATCATTTAT----------------TTC-TA-T-G----G-GTAATA---AATTTT--G-TGG-T-TT----CCACTTCAAAGAC-A-T-ATTC-GTGTGGACTT-AA-ATATGT--TGAAAACAAA-T
gi|84586 : CTGTGAAATCATTTAT----------------TTT-CA-T-G----G-GTATTA---AATTTC--A-TGG-T-TT----CCACTTTAAAGAC-A-T-GTTC-ACGGGGTCTT-AA-ATTCGG--TGAAACCCTA-TTTCC---AAA-A--AAAA
gi|84587 : TGTGAAATCATCAAT----------------TTT-CG-T-T----G-TTATT---------------GG-T-T-----------CAAGGAC-A-T-ATTT-GTGTGAACTT-AA-TTTCGT--TGAAaat
gi|84588 : TAAAAT-ATTAAT----------------TTT-TG-T-T----G-GAATTA---ATTTTC--T-TTT-T-TT----TTTGTGCAAGGAC-A-T-ATTA-ATGGAAACTT-AA-TTTCTT--TGAAAACCAA-TTTGA---GAA-AT-AAAA
gi|84589 : TCATTTAT----------------TTT-CA-T-G----G-GTATTA---AACTGC--G-TGG-at
gi|84589 : GGACTT-AA-ATTCGT--TGAAACTCAATTTTCA---AAA-A--AAAAacttaaattcgttgaaactcaattttcaaaaaaaaa
gi|84590 : tcatttattttcatgggtattaaactgcgtATTAAT----------------TTC-TG-T-T----G-GTATTA---ATTTTC--A-TTG-T-TT----TTGGTTCAAAGAC-A-T-ATTT-GTGGGGAC---AA-ATTT-TAATGAAAA------TTCA---A
gi|84591 : TTAAT----------------TTTTCA-T-G----G--TATTA---TATTTT--T-TTG-T-TT----TTGGTTAAAGGAC-A-T-ATTC-GTTGGGTCTT-AA-TTTCGT--TGAAAACGAA-TTTTA---GAA-A--AAAA
gi|84592 : tTGTGAAAGCATGAAT----------------TTT-T------------TAT-----------------G-T-TT----TTGGTTCAAGGAT-A-T-ATTC-GTGGGGACTT-AA-TTTTGT--TGGGAAATAA-TTTTA---AAA-T--AAtat
gi|84593 : ttcttttcaATTACATAATTTTAAG-TTG-T-TT----TCTATTCAAGGACTA-TTATTC-TTGGGGACTT-GA-TATCGT--TGAAAAGCAA-TTTAA---GAA-A--AAAA
gi|84594 : TTTC--G-TGT-T-TT------G-TTCAAGGAG-T-T-ATTT-GTGGCGATTT-AA-TTTCAT--TGAAAACCAG-TTTGA---GAA-G--AAAAgt