lowQualScore : 1
lowQualScore : 3 0 0
lowQualScore : . . .
lowQualScore : 2 4 1
consensus : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
Reference ( gi|142950 ) : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142967 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142972 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGACAGTCAGA
gi|142945 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142990 : ATATATCAATCATCACGGAGACTGTTGCCAGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142989 : ATATATCAATCATCACGAAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142988 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTGAGA
gi|142985 : ATATATCAATCATCATGGAGACTGTTGCTGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
gi|142995 : ATATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCGATCTCACGACCCCTGGATTGATAGTCAGA
gi|142993 : ATATATCAATCATCACCGAGACTGTTGCCAGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142955 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACTACCCCTGGATTGATAGTCAGA
gi|142783 : ATATATCAATCATCACGGAGACTGTGGCCGGGC-GG-GGAATTCGAACTCACGACCTCTGGATTGATAGTCAGA
gi|142978 : tATATATCAATCATCACAGAGACTGTTGCCGGTC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142981 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGAAATTCAGA
gi|142979 : ATATATCAATCATCTAGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142994 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATGCGAACTCACAACCCTTGGATTGATAGTTAGA
gi|142957 : ATATATCAATCGTCACAGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142947 : ATATATCAATCATCACAGAGACTGTTGCCAGGC-GG-AG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142974 : ATATATCAATCATCACGGAGACTGTGGCCGGGT-GG-GG-ATTCGAACTCACGACCTCTGGATTGAAAGTCAGA
gi|142773 : ATATATCAATCATCATGGAGACTGTGGCCGGGC-GA-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142801 : tATATATCAATTATCACAGAGACTGTTGCAGGGC-GG-GG-ATTCAAACTCACGACCGCTGGATTGATAGTCAGA
gi|142951 : tATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCATTGATTGATAGTCAGA
gi|142998 : ATATATTAATCATCACAGAGACTGTTGCCGAGT-CG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142996 : ATATATCAATCATCACGGAGACTGTAGCCAGGC-GG-GGGATTCAAACTCACGACCCCTTGATTGATAGTCAGA
gi|142959 : ATATATCAATCATCACGGACACTGTGGCCGGGC-AG-AA-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142997 : ATATATCAATCATCACAAAGACTGTAGCCAGGC-AG-GT-ATTCAAACTCACCACCCCTGGATTGATAGTCAGA
gi|142984 : ATATATCAACCATCACAGAGATTGTGGCCGAGC-GG-GG-ATTCAAACTAACAA-CCCTGGATTGATAGTCAGA
gi|143101 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143100 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143098 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143124 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ACTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143119 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGGACTCACGACCCCTGGATTGATAGTCAGA
gi|143131 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143130 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143125 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143090 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143179 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143178 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143177 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143175 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143173 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143171 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143168 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143167 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143164 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143163 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143162 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143160 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143158 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143156 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143155 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GGAGG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142809 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143195 : tgTATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATCTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143193 : TATATCAATCATCACGGAGACTGTTGCCGAGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGATAGTCAGA
gi|143169 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAACCAGA
gi|143209 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143205 : TATATCAATCATCACGGAGACTGTTACCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143203 : TATATCAATCATCACGGAGACTGTTGCCGGAC-AG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143200 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143126 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143104 : TATATCAATCATCACGGAGACTGTTGTCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143210 : TATATCAGTCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCA
gi|143109 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACGCACGACCCCTGGATTGATAGTCAGA
gi|143188 : TATATCAATCATCACTGAGACTGTTGCCAGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143112 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143110 : TATATCAATCATCACGGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|142788 : TATATCAATCATCACAGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143144 : tgTATATCAATCATCACGGAGACTGTTGCCAGGT-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143141 : TATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|143139 : TATATCAATCATCATGGAGACTGTTGCCGGAC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143092 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142777 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|143106 : tgTATATCAACCATCACGAAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143115 : TATATCAGTCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACTACCCCTGGATTGATAGTCAGA
gi|143183 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACAACCCCTAGATTGATAGTCAGA
gi|143182 : TATATCAATCATCACGGAAACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143181 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143180 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143095 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142818 : TATATCAATCATCGCAGAGACTGTTGCCGGGC-GG-GG-GTTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|143202 : tgTATACCAATCATCACAGAGATTGTTGCCGGGC-GG-GG-ATTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|143216 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GG-ATTTGAACTCATGACCCCTGGATTGATAGTCAGA
gi|143224 : TATATCAATCATCACAGAGACTGTTGCAGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143140 : TATATCAATCATCACGGAAATTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCCGGATTGATAGTCAGA
gi|142794 : TATATCAATCATCACAGAAACTGTTGCTGGGC-GG-GG-ATTCAAACTCACGACCCCTGAATTGATAGTCAGA
gi|142820 : tgTAAATCAATCATCACGGAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCGTGACCCCTGGATTGATAGTCAGA
gi|143223 : tgTATATCAATCATCACAGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACCATCCCTGGATTGATAGTCAGA
gi|143148 : TATATCAATCATCACATAGACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142811 : TATATCAATGATCACGGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143207 : tgTATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGAACTGACAGTCAGA
gi|142821 : TATATCAATCATCACAGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTTATGACCCCTGGATTGATAGTCAAA
gi|143105 : tgTATATCAATCATCACAGAGACTGTTGCTGGGC-GG-GG-ATTCAAATTCACAACTCCTGGATTGATAGTCAGA
gi|143137 : TATATCAACCATCACGGAGATTGTGGCCGGGC-GG-GG-ATTCGAACTCACAACCCCTGGAATGATAGTCAGA
gi|142828 : TATATCAATCATCACAGAGACTGTTGCTGGGCAGG-GG-ATTCAAACTCACGACCCCTGTATTGATAGTCAGA
gi|143116 : tgTATATCAATCATCACGGAGACTGTGGCTGGGC-AG-GG-ATTCAAACTCACGACTGCTGGATTGATAGTCAGA
gi|142793 : TATATCAATCATCACAGAGAGCGTGACCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGACAGTCAGA
gi|142798 : tgTATATCAACCATCACAGAGACTGTGGCCGGGC-CG-GG-TTTCAAACTCGCAACCCCTGGATTGATAGTCAG
gi|143502 : tgTATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143501 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143507 : TATCAATCATCACGGAGACTGTGGCCGGGT-GA-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
Alignments
lowQualScore : 1
lowQualScore : 3 0 0
lowQualScore : . . .
lowQualScore : 2 4 0
consensus : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
Reference ( family-42 ) : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142773 : ATATATCAATCATCATGGAGACTGTGGCCGGGC-GA-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142777 : tTATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|142783 : tgATATATCAATCATCACGGAGACTGTGGCCGGGC-GG-GGAATTCGAACTCACGACCTCTGGATTGATAGTCAGA
gi|142788 : tTATATCAATCATCACAGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142793 : tgTATATCAATCATCACAGAGAGCGTGACCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGACAGTCAGA
gi|142794 : tgTATATCAATCATCACAGAAACTGTTGCTGGGC-GG-GG-ATTCAAACTCACGACCCCTGAATTGATAGTCAGA
gi|142798 : tgTATATCAACCATCACAGAGACTGTGGCCGGGC-CG-GG-TTTCAAACTCGCAACCCCTGGATTGATAGTCAG
gi|142801 : tgATATATCAATTATCACAGAGACTGTTGCAGGGC-GG-GG-ATTCAAACTCACGACCGCTGGATTGATAGTCAGA
gi|142809 : tTATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142811 : tgTATATCAATGATCACGGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142818 : tgTATATCAATCATCGCAGAGACTGTTGCCGGGC-GG-GG-GTTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|142820 : tgTAAATCAATCATCACGGAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCGTGACCCCTGGATTGATAGTCAGA
gi|142821 : tgTATATCAATCATCACAGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTTATGACCCCTGGATTGATAGTCAAA
gi|142828 : tgTATATCAATCATCACAGAGACTGTTGCTGGGCAGG-GG-ATTCAAACTCACGACCCCTGTATTGATAGTCAGA
gi|142945 : tgATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142947 : ATATATCAATCATCACAGAGACTGTTGCCAGGC-GG-AG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142950 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142951 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCATTGATTGATAGTCAGA
gi|142955 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACTACCCCTGGATTGATAGTCAGA
gi|142957 : ATATATCAATCGTCACAGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142959 : ATATATCAATCATCACGGACACTGTGGCCGGGC-AG-AA-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142967 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142972 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGACAGTCAGA
gi|142974 : ATATATCAATCATCACGGAGACTGTGGCCGGGT-GG-GG-ATTCGAACTCACGACCTCTGGATTGAAAGTCAGA
gi|142978 : ATATATCAATCATCACAGAGACTGTTGCCGGTC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142979 : ATATATCAATCATCTAGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142981 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGAAATTCAGA
gi|142984 : ATATATCAACCATCACAGAGATTGTGGCCGAGC-GG-GG-ATTCAAACTAACAA-CCCTGGATTGATAGTCAGA
gi|142985 : ATATATCAATCATCATGGAGACTGTTGCTGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
gi|142988 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTGAGA
gi|142989 : ATATATCAATCATCACGAAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142990 : ATATATCAATCATCACGGAGACTGTTGCCAGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142993 : ATATATCAATCATCACCGAGACTGTTGCCAGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142994 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATGCGAACTCACAACCCTTGGATTGATAGTTAGA
gi|142995 : ATATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCGATCTCACGACCCCTGGATTGATAGTCAGA
gi|142996 : ATATATCAATCATCACGGAGACTGTAGCCAGGC-GG-GGGATTCAAACTCACGACCCCTTGATTGATAGTCAGA
gi|142997 : ATATATCAATCATCACAAAGACTGTAGCCAGGC-AG-GT-ATTCAAACTCACCACCCCTGGATTGATAGTCAGA
gi|142998 : ATATATTAATCATCACAGAGACTGTTGCCGAGT-CG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143090 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143092 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143095 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143098 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143100 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143101 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143104 : TATATCAATCATCACGGAGACTGTTGTCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143105 : TATATCAATCATCACAGAGACTGTTGCTGGGC-GG-GG-ATTCAAATTCACAACTCCTGGATTGATAGTCAGA
gi|143106 : TATATCAACCATCACGAAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143109 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACGCACGACCCCTGGATTGATAGTCAGA
gi|143110 : TATATCAATCATCACGGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143112 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143115 : TATATCAGTCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACTACCCCTGGATTGATAGTCAGA
gi|143116 : TATATCAATCATCACGGAGACTGTGGCTGGGC-AG-GG-ATTCAAACTCACGACTGCTGGATTGATAGTCAGA
gi|143119 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGGACTCACGACCCCTGGATTGATAGTCAGA
gi|143124 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ACTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143125 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143126 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143130 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143131 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143137 : TATATCAACCATCACGGAGATTGTGGCCGGGC-GG-GG-ATTCGAACTCACAACCCCTGGAATGATAGTCAGA
gi|143139 : TATATCAATCATCATGGAGACTGTTGCCGGAC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143140 : TATATCAATCATCACGGAAATTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCCGGATTGATAGTCAGA
gi|143141 : TATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|143144 : TATATCAATCATCACGGAGACTGTTGCCAGGT-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143148 : TATATCAATCATCACATAGACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143155 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GGAGG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143156 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143158 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143160 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143162 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143163 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143164 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143167 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143168 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143169 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAACCAGA
gi|143171 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143173 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143175 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143177 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143178 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143179 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143180 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143181 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143182 : TATATCAATCATCACGGAAACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143183 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACAACCCCTAGATTGATAGTCAGA
gi|143188 : TATATCAATCATCACTGAGACTGTTGCCAGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143193 : TATATCAATCATCACGGAGACTGTTGCCGAGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGATAGTCAGA
gi|143195 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATCTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143200 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143202 : TATACCAATCATCACAGAGATTGTTGCCGGGC-GG-GG-ATTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|143203 : TATATCAATCATCACGGAGACTGTTGCCGGAC-AG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143205 : TATATCAATCATCACGGAGACTGTTACCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143207 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGAACTGACAGTCAGA
gi|143209 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143210 : TATATCAGTCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCA
gi|143216 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GG-ATTTGAACTCATGACCCCTGGATTGATAGTCAGA
gi|143223 : TATATCAATCATCACAGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACCATCCCTGGATTGATAGTCAGA
gi|143224 : TATATCAATCATCACAGAGACTGTTGCAGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143501 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143502 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143507 : TATCAATCATCACGGAGACTGTGGCCGGGT-GA-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
Alignments
lowQualScore : 1
lowQualScore : 3 0 0
lowQualScore : . . .
lowQualScore : 2 4 0
consensus : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
Reference ( family-42 ) : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142773 : ATATATCAATCATCATGGAGACTGTGGCCGGGC-GA-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142777 : tTATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|142783 : tgATATATCAATCATCACGGAGACTGTGGCCGGGC-GG-GGAATTCGAACTCACGACCTCTGGATTGATAGTCAGA
gi|142788 : tTATATCAATCATCACAGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142793 : tgTATATCAATCATCACAGAGAGCGTGACCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGACAGTCAGA
gi|142794 : tgTATATCAATCATCACAGAAACTGTTGCTGGGC-GG-GG-ATTCAAACTCACGACCCCTGAATTGATAGTCAGA
gi|142798 : tgTATATCAACCATCACAGAGACTGTGGCCGGGC-CG-GG-TTTCAAACTCGCAACCCCTGGATTGATAGTCAG
gi|142801 : tgATATATCAATTATCACAGAGACTGTTGCAGGGC-GG-GG-ATTCAAACTCACGACCGCTGGATTGATAGTCAGA
gi|142809 : tTATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142811 : tgTATATCAATGATCACGGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142818 : tgTATATCAATCATCGCAGAGACTGTTGCCGGGC-GG-GG-GTTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|142820 : tgTAAATCAATCATCACGGAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCGTGACCCCTGGATTGATAGTCAGA
gi|142821 : tgTATATCAATCATCACAGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTTATGACCCCTGGATTGATAGTCAAA
gi|142828 : tgTATATCAATCATCACAGAGACTGTTGCTGGGCAGG-GG-ATTCAAACTCACGACCCCTGTATTGATAGTCAGA
gi|142945 : tgATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142947 : ATATATCAATCATCACAGAGACTGTTGCCAGGC-GG-AG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142950 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142951 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCATTGATTGATAGTCAGA
gi|142955 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACTACCCCTGGATTGATAGTCAGA
gi|142957 : ATATATCAATCGTCACAGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142959 : ATATATCAATCATCACGGACACTGTGGCCGGGC-AG-AA-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142967 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142972 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGACAGTCAGA
gi|142974 : ATATATCAATCATCACGGAGACTGTGGCCGGGT-GG-GG-ATTCGAACTCACGACCTCTGGATTGAAAGTCAGA
gi|142978 : ATATATCAATCATCACAGAGACTGTTGCCGGTC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142979 : ATATATCAATCATCTAGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142981 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGAAATTCAGA
gi|142984 : ATATATCAACCATCACAGAGATTGTGGCCGAGC-GG-GG-ATTCAAACTAACAA-CCCTGGATTGATAGTCAGA
gi|142985 : ATATATCAATCATCATGGAGACTGTTGCTGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
gi|142988 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTGAGA
gi|142989 : ATATATCAATCATCACGAAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142990 : ATATATCAATCATCACGGAGACTGTTGCCAGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142993 : ATATATCAATCATCACCGAGACTGTTGCCAGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142994 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATGCGAACTCACAACCCTTGGATTGATAGTTAGA
gi|142995 : ATATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCGATCTCACGACCCCTGGATTGATAGTCAGA
gi|142996 : ATATATCAATCATCACGGAGACTGTAGCCAGGC-GG-GGGATTCAAACTCACGACCCCTTGATTGATAGTCAGA
gi|142997 : ATATATCAATCATCACAAAGACTGTAGCCAGGC-AG-GT-ATTCAAACTCACCACCCCTGGATTGATAGTCAGA
gi|142998 : ATATATTAATCATCACAGAGACTGTTGCCGAGT-CG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143090 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143092 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143095 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143098 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143100 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143101 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143104 : TATATCAATCATCACGGAGACTGTTGTCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143105 : TATATCAATCATCACAGAGACTGTTGCTGGGC-GG-GG-ATTCAAATTCACAACTCCTGGATTGATAGTCAGA
gi|143106 : TATATCAACCATCACGAAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143109 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACGCACGACCCCTGGATTGATAGTCAGA
gi|143110 : TATATCAATCATCACGGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143112 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143115 : TATATCAGTCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACTACCCCTGGATTGATAGTCAGA
gi|143116 : TATATCAATCATCACGGAGACTGTGGCTGGGC-AG-GG-ATTCAAACTCACGACTGCTGGATTGATAGTCAGA
gi|143119 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGGACTCACGACCCCTGGATTGATAGTCAGA
gi|143124 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ACTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143125 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143126 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143130 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143131 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143137 : TATATCAACCATCACGGAGATTGTGGCCGGGC-GG-GG-ATTCGAACTCACAACCCCTGGAATGATAGTCAGA
gi|143139 : TATATCAATCATCATGGAGACTGTTGCCGGAC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143140 : TATATCAATCATCACGGAAATTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCCGGATTGATAGTCAGA
gi|143141 : TATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|143144 : TATATCAATCATCACGGAGACTGTTGCCAGGT-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143148 : TATATCAATCATCACATAGACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143155 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GGAGG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143156 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143158 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143160 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143162 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143163 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143164 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143167 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143168 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143169 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAACCAGA
gi|143171 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143173 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143175 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143177 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143178 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143179 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143180 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143181 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143182 : TATATCAATCATCACGGAAACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143183 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACAACCCCTAGATTGATAGTCAGA
gi|143188 : TATATCAATCATCACTGAGACTGTTGCCAGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143193 : TATATCAATCATCACGGAGACTGTTGCCGAGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGATAGTCAGA
gi|143195 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATCTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143200 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143202 : TATACCAATCATCACAGAGATTGTTGCCGGGC-GG-GG-ATTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|143203 : TATATCAATCATCACGGAGACTGTTGCCGGAC-AG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143205 : TATATCAATCATCACGGAGACTGTTACCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143207 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGAACTGACAGTCAGA
gi|143209 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143210 : TATATCAGTCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCA
gi|143216 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GG-ATTTGAACTCATGACCCCTGGATTGATAGTCAGA
gi|143223 : TATATCAATCATCACAGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACCATCCCTGGATTGATAGTCAGA
gi|143224 : TATATCAATCATCACAGAGACTGTTGCAGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143501 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143502 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143507 : TATCAATCATCACGGAGACTGTGGCCGGGT-GA-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
blockSeqs : A A
blockSeqs : A G
blockSeqs : A G
blockSeqs : A G
blockSeqs : G G
blockSeqs : A G
blockSeqs : G G
blockSeqs : G G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
blockSeqs : . G
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blockSeqCons :
originalCons : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
finalCons : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
Alignments
lowQualScore : 1
lowQualScore : 3 0 0
lowQualScore : . . .
lowQualScore : 2 4 0
consensus : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
Reference ( family-42 ) : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142773 : ATATATCAATCATCATGGAGACTGTGGCCGGGC-GA-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142777 : tTATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|142783 : tgATATATCAATCATCACGGAGACTGTGGCCGGGC-GG-GGAATTCGAACTCACGACCTCTGGATTGATAGTCAGA
gi|142788 : tTATATCAATCATCACAGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142793 : tgTATATCAATCATCACAGAGAGCGTGACCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGACAGTCAGA
gi|142794 : tgTATATCAATCATCACAGAAACTGTTGCTGGGC-GG-GG-ATTCAAACTCACGACCCCTGAATTGATAGTCAGA
gi|142798 : tgTATATCAACCATCACAGAGACTGTGGCCGGGC-CG-GG-TTTCAAACTCGCAACCCCTGGATTGATAGTCAG
gi|142801 : tgATATATCAATTATCACAGAGACTGTTGCAGGGC-GG-GG-ATTCAAACTCACGACCGCTGGATTGATAGTCAGA
gi|142809 : tTATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142811 : tgTATATCAATGATCACGGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142818 : tgTATATCAATCATCGCAGAGACTGTTGCCGGGC-GG-GG-GTTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|142820 : tgTAAATCAATCATCACGGAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCGTGACCCCTGGATTGATAGTCAGA
gi|142821 : tgTATATCAATCATCACAGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTTATGACCCCTGGATTGATAGTCAAA
gi|142828 : tgTATATCAATCATCACAGAGACTGTTGCTGGGCAGG-GG-ATTCAAACTCACGACCCCTGTATTGATAGTCAGA
gi|142945 : tgATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142947 : ATATATCAATCATCACAGAGACTGTTGCCAGGC-GG-AG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142950 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142951 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCATTGATTGATAGTCAGA
gi|142955 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACTACCCCTGGATTGATAGTCAGA
gi|142957 : ATATATCAATCGTCACAGAGACTGTTACCAGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142959 : ATATATCAATCATCACGGACACTGTGGCCGGGC-AG-AA-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|142967 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142972 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGACAGTCAGA
gi|142974 : ATATATCAATCATCACGGAGACTGTGGCCGGGT-GG-GG-ATTCGAACTCACGACCTCTGGATTGAAAGTCAGA
gi|142978 : ATATATCAATCATCACAGAGACTGTTGCCGGTC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142979 : ATATATCAATCATCTAGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|142981 : ATATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGAAATTCAGA
gi|142984 : ATATATCAACCATCACAGAGATTGTGGCCGAGC-GG-GG-ATTCAAACTAACAA-CCCTGGATTGATAGTCAGA
gi|142985 : ATATATCAATCATCATGGAGACTGTTGCTGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG
gi|142988 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTGAGA
gi|142989 : ATATATCAATCATCACGAAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142990 : ATATATCAATCATCACGGAGACTGTTGCCAGGCAGG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142993 : ATATATCAATCATCACCGAGACTGTTGCCAGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|142994 : ATATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATGCGAACTCACAACCCTTGGATTGATAGTTAGA
gi|142995 : ATATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCGATCTCACGACCCCTGGATTGATAGTCAGA
gi|142996 : ATATATCAATCATCACGGAGACTGTAGCCAGGC-GG-GGGATTCAAACTCACGACCCCTTGATTGATAGTCAGA
gi|142997 : ATATATCAATCATCACAAAGACTGTAGCCAGGC-AG-GT-ATTCAAACTCACCACCCCTGGATTGATAGTCAGA
gi|142998 : ATATATTAATCATCACAGAGACTGTTGCCGAGT-CG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143090 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143092 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143095 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCAAACTCACAACCCCTGGATTGATAGTCAGA
gi|143098 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143100 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143101 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143104 : TATATCAATCATCACGGAGACTGTTGTCGGGC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143105 : TATATCAATCATCACAGAGACTGTTGCTGGGC-GG-GG-ATTCAAATTCACAACTCCTGGATTGATAGTCAGA
gi|143106 : TATATCAACCATCACGAAGACTGTGGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143109 : TATATCAATCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACGCACGACCCCTGGATTGATAGTCAGA
gi|143110 : TATATCAATCATCACGGAGACTGTTGCCGGGCAGG-GG-ATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143112 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143115 : TATATCAGTCATCACAGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACTACCCCTGGATTGATAGTCAGA
gi|143116 : TATATCAATCATCACGGAGACTGTGGCTGGGC-AG-GG-ATTCAAACTCACGACTGCTGGATTGATAGTCAGA
gi|143119 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGGACTCACGACCCCTGGATTGATAGTCAGA
gi|143124 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ACTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143125 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143126 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143130 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143131 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GA-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143137 : TATATCAACCATCACGGAGATTGTGGCCGGGC-GG-GG-ATTCGAACTCACAACCCCTGGAATGATAGTCAGA
gi|143139 : TATATCAATCATCATGGAGACTGTTGCCGGAC-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143140 : TATATCAATCATCACGGAAATTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCCGGATTGATAGTCAGA
gi|143141 : TATATCAATCATCACGGAGACTGTTGCCAGGC-GG-GG-ATTCAAACTCATGACCCCTGGATTGATAGTCAGA
gi|143144 : TATATCAATCATCACGGAGACTGTTGCCAGGT-GG-GG-ATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143148 : TATATCAATCATCACATAGACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143155 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GGAGG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143156 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143158 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143160 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143162 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143163 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143164 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143167 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143168 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143169 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAACCAGA
gi|143171 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143173 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143175 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143177 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143178 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143179 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143180 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143181 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GGGATTCGAACTCACAACCCCTGGATTGATAGTCAGA
gi|143182 : TATATCAATCATCACGGAAACTGTTGCCGGGC-GG-GGGATTCAAACTCACGACCCCTGGATTGATAGTCAGA
gi|143183 : TATATCAATCATCACGGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACAACCCCTAGATTGATAGTCAGA
gi|143188 : TATATCAATCATCACTGAGACTGTTGCCAGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143193 : TATATCAATCATCACGGAGACTGTTGCCGAGC-GG-GG-ATTCGAACTCACGACCCCTGGGTTGATAGTCAGA
gi|143195 : TATATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATCTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143200 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143202 : TATACCAATCATCACAGAGATTGTTGCCGGGC-GG-GG-ATTCGAATTCACGACCCCTGGATTGATAGTCAGA
gi|143203 : TATATCAATCATCACGGAGACTGTTGCCGGAC-AG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143205 : TATATCAATCATCACGGAGACTGTTACCGGGC-GG-GG-ATTTGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143207 : TATATCAATCATCATGGAGACTGTTGCCGGGC-GG-GG-ATTCAAACTCACAACCCCTGAACTGACAGTCAGA
gi|143209 : TATATCAATCATCACGGAGACTATTGCCGGGC-GG-GG-ATTCGAACTCACGATCCCTGGATTGATAGTCAGA
gi|143210 : TATATCAGTCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCA
gi|143216 : TATATCAATCATCACAGAGACTGTTGCCGGGT-GG-GG-ATTTGAACTCATGACCCCTGGATTGATAGTCAGA
gi|143223 : TATATCAATCATCACAGAGACTGTTGCCGGGCGGG-GG-ATTCGAACTCACCATCCCTGGATTGATAGTCAGA
gi|143224 : TATATCAATCATCACAGAGACTGTTGCAGGGC-GG-GGGATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143501 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143502 : TATCAATCATCACGGAGACTGTTGCCGGGC-GG-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAGA
gi|143507 : TATCAATCATCACGGAGACTGTGGCCGGGT-GA-GG-ATTCGAACTCACGACCCCTGGATTGATAGTCAG