lowQualScore : 0 0 77 1 00 0 4444444 1111111 0 2222222 00 0 4444444 0 0 00
lowQualScore : . . .. . .. . ....... ....... . ....... .. . ....... . . ..
lowQualScore : 9 8 99 2 77 3 0000000 3333333 3 0000000 44 3 3333333 3 3 44
consensus : AATGTATT-TTGTAAGA-A-NAGA-GGGGCGGGTG--A-AAATAT-----N-A-------TG-G-------CC--A-T-N-----ATA-TTT-T--CACCC
Reference ( gi|14035 ) : AATGTATT-TTGTAAGA-A-TAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14037 : AATGTATT-TTGTAAGA-A-TAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACC
gi|14044 : AATGTATT-TTGTAAGA-A-TAGA-GGGGCGGGTG--A-AAATAT-----T-A-------AA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14031 : AATGTATT-TTGTAAGA-A-TAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CGTCC
gi|14043 : AATGTATT-TTGTAAGA-A-TAGA-GGGGCAGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACC
gi|14032 : AATGTGTT-TTGTAAGA-A-TAGA-GGGGAGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14038 : AATATATT-TTGTAAGA-A-TAGA-GGGGCGGGTGA-A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14023 : AATGTATT-TTGTAAGA-A-AAGA-GGGGCGGGTG--A-AAATAC-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14033 : ttttttaattAATGTATT-TTGCAAGA-A-TAGA-CAGGCAGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14047 : AATGTATTCTTGTAAGA-A-TAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CA
gi|14030 : AATGTACT-TTGGAAGA-A-TAAA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-G--CACCC
gi|14041 : tAATGTATT-TTGTAATG-A-TAGA-GGGGTGGGTG--A-AAATAT-----A-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14042 : AATGTATT-TTGTAAGA-A-AAGA-GTGGCAGGTG--A-AAATAT-----T-A-------TA-G-------TC--A-T-T-----ATA-TTT-T--CACCC
gi|14039 : AATGTATT-TTGTAAGA-A-TAGA-GGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TT
gi|14048 : AATGTATT-TTGTAAGA-A-TAGA-GGGGTAGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TT
gi|14045 : AATGTATT-TTGTAAGA-A-TAGA-GGGGTGGGTG--A-AATTAT-----T-A-------TA-G-------TC--A-T-T-----ATA-TCC-C--CCCCC
gi|14040 : AATGTATT-TTGTAGGA-A-TAGA-GGAGCGGGTG--A-AAATAT-----A-A-------TG-G-------CC--A-T-A-----ATA-TTT-A--CACC
gi|14034 : AATGTACT-TTGTAAGC-A-CAGA-GGGGCAGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----GTA-TTT-C--CCCC
gi|14029 : AATGTATC-TTACAAGA-A-AAAATGAGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-CTT-T--CACCC
gi|14022 : tAATGTATT-TTGTAAGA-A-AAGA-GGGGCGGGTG--A-AAATAT-----C-A-------T--G-------AC--A-TAT-----ATT-TTT-T--CACTC
gi|14009 : cttttttaacctAATTTATC-TGATGAGG-A-AAGA-GGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACC
gi|14020 : aatatgtttgctttgtttaaatAATGTATC-TTTCAAGATA-TAAT-GAGGCGGGTA--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-CTT-T--CACCC
gi|14046 : aattatctactttagatagtcaactAATGTATG-TTATTAGA-C-TAGA-GGGGTGGGTA--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTC-C--CCCCC
gi|14008 : AATTTATT-TGATGAGG-A-GAGA-GGGGCAGGTG--A-AAATAT-----T-A-------TA-G-------TC--A-A-T-----ATA-TTT-T--CACCC
gi|14025 : aatatgttggctttattttaatAATGTTTC-TTTCAAGA-AATAAT-GAGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-CTT-T--CACCC
gi|14049 : ttcagataatcgtctAATGTATT-TTGTAAGA-A-ATGA-GAGGTTGGTG--A-ATATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CA
gi|14014 : AATTTATC-TGACGAGG-A-CAGA-AGGGCGGGTG--A-AAATAT-----T-A-------CA-G-------CC--A-A-T-----ATA-TTT-T--CACCC
gi|14002 : aacatgtttgttttatttaaatAATTTATC-TGATGAGG-A-AAGA-GGGGTGTGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATA-TTT-T--CACCC
gi|14004 : aatatatttgctttattgaaatAATTTATC-TGATGAGG-A-AAGA-GGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATA-TAT-T--CACCC
gi|14021 : aatatatttgctttattgaaatAATTTATC-TGATGAGG-A-AAGA-AGGGTTGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACC
gi|14036 : tgtttgctttgtttaaatAATGTATT-TAG-AAGA-A-AAGA-GGAGCAGGTG--A-AAATAT-----T-A-------TA-GAATTTTCCT--A-T-A-----ATA-TTT-T--CACCC
gi|14026 : AATTTATT-TTG-AAGA-A-AAGA-GAGGCGGGTG--A-AAATAT-----T-ATAGAATTTA-G-------CT--A-T-A-----ATA-TTG-T--CACCC
gi|14010 : ttaaAATTTATC-TGACGAGG-A-AAGA-TGGGCGGGTG--A-AAATAT-----T-A-------TT-G-------CC--A-G-T-----ATA-TTT-T--CACCC
gi|14028 : aatacatttgctttactgaaatATGTATT-TTGTAAGA-A-TGGA-GGTGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14027 : aatattATGTATT-TTGTAAGA-A-TAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-T
gi|14005 : aaattATTTATC-TGATAAGG-A-AAGA-GGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATA-TTT-T--CACCC
gi|14050 : aaaatatttgctttattgaaatgATGTATT-TTGTAAGA-A---AA-GGGGCAGATG--A-AAATATTATAAT-A-------TA-G-------CC--G-A-T-----ATA-TTT-T--CATCC
gi|14052 : TATT-TTGTAAGA-A-AAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CAACC
gi|14053 : TATT-TTGTAAGA-A-AATA-GGGGCAGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-TAACACCC
gi|14051 : TATT-TTGTAAGA-A-AAGA-GGGGCGAGTG--A-AAATGT-----T-A-------CA-G-------CC--T-T-T-----ATA-ATT-T--CACCC
gi|13999 : TATC-TGATGAGG-A-AAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATA-TTT-T--CACCC
gi|14011 : aatatatttgctttattgaaatatttTATC-TGATGAGG-A-AAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATG-TTT-T--CACCC
gi|14001 : aatatatttgctttattgaaatattttttTATC-TGATGAGG-A-AAGA-GGGGCAGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATG-TCT-T--CACC
gi|14006 : aatatatttgctttattgaaatatttTATC-TGATGAGG-A-AAGA-GGGACGGGTG--A-GAATAT-----T-A-------TA-G-------CC--A-G-T-----ATG-TCT-T--TACCC
gi|14016 : aatatatttgctttattgaaatatttTATC-TGATGAGG-A-AAGA-GGTGCAGGTG--A-AAATAT-----T-A-------AA-G-------CC--A-G-T-----ATG-TCT-T--CACTC
gi|14054 : aatatatttgctttaattgaaatatttTAAGA-A-AAGA-GGGGCGGGTG--A-AAATAT-----T-T-------TA-G-------CC--A-T-T-----ATA-TTT-T--CATCC
gi|14007 : TGAGG-A-AAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-A-T-----ATA-TTT-T--CACCC
gi|14000 : aatatatttgctttattaaaataatttaactgaTGAGG-A-AAGA-GGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATA-TTT-T--CACCC
gi|14012 : aatatatttgctttattgaaataatttagctgaTGAGG-A-AAGA-GGGGCGAATG--A-AAATAT-----T-A-------TA-A-------CC--A-A-T-----ATA-TTT-T--CACCC
gi|14018 : aatatgtttgctttatttaaataatttctctgaTGAGG-A-AAGA-GGGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--AGTGT-----ATG-TCT-T--CACCC
gi|14059 : aatatcttgcttatttaaaatatttcatctgaAAAA-A-T----GAGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-CTT-T--CACCC
gi|14017 : AGGA-A--AGA-AGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTTCT--CATC
gi|14057 : aatatatttgctatgtttaaataatctatctgaggAGA-A-AAAATGAGGCAGGTG--A-AAATAT-----T-G-------TA-G-------CC--A-T-T-----ATA-CTT-T--CATCC
gi|14058 : A-A-TAAT-GAGGCGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-CTT-T--CACCC
gi|14063 : gaAGA-GGGATGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14062 : AGA-GGGG--GGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14069 : AGA-GGGGCGTGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA--TT-T--CACCC
gi|14066 : AGA-GGGG--GGTG--A-AAATAT-----T-A-------CA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14068 : AGA-GGGG--GATG--A-AAATAT-----T-A-------TA-G-------CT--A-T-T-----ATA-TTT-T--CACCC
gi|14065 : AGA-GGAGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTC-C--CCCCC
gi|14064 : AGA-GGGGTG--TG--A-AAATAT-----T-A-------TA-G-------CC--A-G-T-----ATA-TTT-T--CACCC
gi|14067 : AGA-GGGG---GTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-A--CACCC
gi|14070 : AGA-GAGG--GGTG--A-AATTAT-----T-A-------TA-G-------CC--A-A-T-----ATA-TTT-T--TACC
gi|14024 : GG-GGGGGGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14055 : atttaataattgggtttgggggGG-GGGGGGGGGG--G-GAATAT-----T-A-------TA-G-------CA--A-T-T-----ATA-TTT-T--CACCC
gi|14061 : gagggggA-GAGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CT--A-G-T-----ATA-TTT-T--CACC
gi|14060 : aacA-GGGG--GGTG--A-AAATTT-----T-A-------TA-G-------CT--A-T-T-----ATA-TTT-T--CACCC
gi|14056 : aac-GGGGTGGGTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----TTA-TTT-T--CCCCC
gi|14071 : aggggatg-GAGGCAGGTG--A-AAATAT-----TTA-------TA-G-------CC--A-T-T-----ATA-CTT-T--CACCC
gi|14073 : CGGGTG--A-AAATAT-----T-A-------TG-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14072 : CAGGTG--A-AAATAT-----T-A-------TG-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14044 : GGGTG--A-AAATAT-----A-A-------TG-G-------CT--T-T-A-----ATA-TTT-T--CACCC
gi|14031 : aatgtattttgtaagaatagaggggcGGACG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14032 : aatgtattttgtaagaatagaggggcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14038 : aatgtgttttgtaagaatagaggggaGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATATTTT-T--CACCC
gi|14023 : aatatattttgtaagaatagaggggcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----GTA-TTT-T--CACCC
gi|14028 : ttttttaattaatgtattttgtaagaaaagaggggcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14033 : aatattatgtattttgtaagaatggaggtgcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACC
gi|14030 : aatgtattttgcaagaatagacaggcaGGGTG--C-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14041 : taatgtactttggaagaataaaggggcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-T-----ATA-TTT-T--CACCC
gi|14042 : aatgtattttgtaatgatagaggggtGGGTG--A-AAATAT-----A-A-------TG-A-------CT--A-T-A-----ATA-TTT-T--CACC
gi|14052 : aatgtattttgtaagaaaagagtggcaGGTTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14053 : tattttgtaagaaaagaggggcGGGTGTTA-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACC
gi|14029 : tattttgtaagaaaataggggcaGGGTG--A-AAGTAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14054 : taatgtatcttacaagaaaaaatgaggcGGATG--A-AAATAT-----A-A-------TG-G-------CT--A-A-A-----ATA-TTT-T--CACCC
gi|14022 : taagaaaagaggggcGAGTG--A-AAAAAT-------A-------TATG-------TC--A-T-G-----ATA-TTT-T--CACCC
gi|13999 : cttttttaacctaatgtattttgtaagaaaagaggggcGGGTG--A-AAATAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14005 : aatatatttgctttattgaaatattttatctgatgaggaaagaggggcGGGTG--A-AAATAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14020 : aaaatatttgctttattgaaatgatttatctgataaggaaagaggggtGGGTG--A-AAGTAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--TACCC
gi|14007 : aattatctactttagatagtcaactaatgtatctttcaagatataatgaggcGGGTG--A-AAATAT-----A-T-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14046 : aatatatttgctttattaaaataatttaactgatgaggaaagaggggcGGGGG--G-GAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--TACCC
gi|14063 : aatgtatgttattagactagaggggtGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14008 : agagggatGGGTG--A-AAATAT-----A-T-------TG-A-------CT--A-T-A-----ATA-TTT-T--CACC
gi|14025 : aatatgttggctttattttaataatttatttgatgaggagagaggggcaGGGTG--A-AAGTAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14011 : ttcagataatcgtctaatgtttctttcaagaaataatgaggcGGGTG--A-AAACAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14000 : aatatatttgctttattgaaatatttttttatctgatgaggaaagaggggcGGGTG--A-AAATAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14024 : aatatatttgctttattgaaataatttagctgatgaggaaagaggggtGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14058 : atttaataattgggtttggggggggggggGGGTG--A-AAGTAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14062 : gaaataatgaggcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14014 : agagggGGGTG--A-AAATAT-----A-T-------TG-G-------CT--G-T-A-----ATA-TTT-T--CACCC
gi|14002 : aacatgtttgttttatttaaataatttatctgacgaggacagaagggcGGGTG--A-AAATAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CAC
gi|14069 : aatatatttgctttattgaaataatttatctgatgaggaaagaggggtgtGGGTG--A-AA-TAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CAC
gi|14004 : agaggggcgtGGGTG--A-ATATAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14059 : aatatatttgctttattgaaataatttatctgatgaggaaagaggggtGGGTG--A-AAGTAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14066 : aaaaatgaggcGGGTG--A-AAATAT-----A-A-------TG-G-------CT--G-T-A-----ATA-TTT-T--CACCC
gi|14036 : agagggGGGTG--A-AAATAT-----T-A-------TA-GGAAAATTCT--A-T-A-----ATA-TTT-T--CACC
gi|14026 : aatgtatttagaagaaaagaggagcaGGGTG--A-CAATAT-----T-A-------TA-G-------CTAAA-T-TCTATAATA-TTT-T--CACCC
gi|14018 : ttaaaatttattttgaagaaaagagaggcGGGTG--A-AGACATA----C-AC------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14010 : aatatcttgcttatttaaaatatttcatctgatgaggaaagaggggcGGGTG--A-AAATAT-----A-C-------TG-G-------CA--A-T-A-----ATA-TTT-T--CACCC
gi|14068 : aatacatttgctttactgaaataatttatctgacgaggaaagatgggcGGGTG--A-AAATAT-----A-A-------TA-G-------CT--A-T-A-----ATA-TTT-T--CATCC
gi|14065 : agagggGGGGG--G-GAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14073 : agaggagtGGGTG--A-AAATAT-----A-A-------TG-G-------CC--A-T-A-----ATA-TTT-T--CACCC
gi|14064 : cGGGTG--A-AAATAT-----A-C-------TG-G-------CT--A-T-A-----ATA-TTT-T--CAC
gi|14056 : agaggggtGGGGG--A-AAATAA-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14067 : aggggatgggggtGGGTG--T-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14071 : agaggGGGTG--A-AAGTAT-----A-A-------TG-G-------CT--A-TAA-----ATA-TTT-T--CACC
gi|14072 : gaggcaGGGTG--A-AAATAT-----A-A-------TG-G-------CC--A-T-A-----ATA-TTT-T--CACC
gi|14057 : caGGATG--A-AAGTAT-----A-A-------TG-G-------CT--A-C-A-----ATA-TTT-T--CACC
gi|14074 : agaaaaaatgaggcaGGTTG--A-AAATAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14074 : GGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CAACC
gi|14060 : GGGTG--A-AAATAT-----A-A-------TA-G-------CT--A-T-A-----AAA-TTT-T--CACCC
gi|14055 : aacagggGGGTG--A-AAATAT-----A-A-------TT-G-------CT--A-T-A-----ATA-TTC-C--CCCCC
gi|14037 : gaggggggggggggGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14043 : aatgtattttgtaagaatagaggggcGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACC
gi|14040 : aatgtattttgtaagaatagaggggcaGGTG--T-AAATAT-----T-A-------TG-G-------CC--A-T-T-----ATA-TTT-T--CACCC
gi|14009 : aatgtattttgtaggaatagaggagcGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14021 : aatatgtttgctttgtttaaataatttatctgatgaggaaagaggggtGGTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACC
gi|14017 : tgtttgctttgtttaaataatttatctgatgaggaaagaagggttGATG--AGAAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14061 : aatatatttgctatgtttaaataatctatctgaggaggaaagaagggtGGTG--A-AAATAT-----A-C-------TA-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14047 : aacagaggtTG--A-AAATAT-----A-A-------TG-G-------CT--A-T-A-----ATA-TTT-T--CACCC
gi|14015 : aatgtattcttgtaagaatagaggggcAT-----T-A-------TA-G-------CC--A-T-T-----ATA-TTT-T--CACCC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14019 ): AATGTGTTTGATTTGTATAAATAATTTATCTGATGAGGAAAGAAGGGTGGGTGAAAATAT
Unaligned ( gi|14013 ): AATATGTTTTGCTTTATTTAAATATTTTCTCTGATGAGGAAAGAAGTGCGGGTGAAAATATAATA
Unaligned ( gi|14003 ): AATATGTTTGCTTTGTTTAAATAATTTATTTGATAAGGAAAGAG
Alignments
lowQualScore : 0 0 1 1 0 2222222 1111111 5 1111111 0 22 0 00
lowQualScore : . . . . . ....... ....... . ....... . .. . ..
lowQualScore : 9 7 0 7 5 9999999 8888888 0 8888888 5 11 6 88
consensus : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
Reference ( family-383 ) : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----N-A-------TGG-------CCA-T-NATATTT-T--CACCC
gi|13999 : TATC-TGATGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14000 : aatatatttgctttattgaaatatttTGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14001 : aatatatttgctttattgaaataatttagctgaTATC-TGATGAGG-AAAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATGTCT-T--CACC
gi|14002 : aatatatttgctttattgaaatatttAATTTATC-TGATGAGG-AAAGA-GGGGTGTGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14004 : aatatatttgctttattgaaatAATTTATC-TGATGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATAT-T--CACCC
gi|14005 : aatatatttgctttattgaaatATTTATC-TGATAAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14006 : aaaatatttgctttattgaaatgTATC-TGATGAGG-AAAGA-GGGACGGGTG-AGAATAT-----T-A-------TAG-------CCA-G-TATGTCT-T--TACCC
gi|14007 : aatatatttgctttattgaaatatttTGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-A-TATATTT-T--CACCC
gi|14008 : aatatatttgctttattaaaataatttaactgaAATTTATT-TGATGAGG-AGAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------TCA-A-TATATTT-T--CACCC
gi|14009 : aatatgttggctttattttaatAATTTATC-TGATGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14010 : aatatgtttgctttgtttaaatAATTTATC-TGACGAGG-AAAGA-TGGGCGGGTG-AAAATAT-----T-A-------TTG-------CCA-G-TATATTT-T--CACCC
gi|14011 : aatacatttgctttactgaaatTATC-TGATGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATGTTT-T--CACCC
gi|14012 : aatatatttgctttattgaaatattttttTGAGG-AAAGA-GGGGCGAATG-AAAATAT-----T-A-------TAA-------CCA-A-TATATTT-T--CACCC
gi|14014 : aatatgtttgctttatttaaataatttctctgaAATTTATC-TGACGAGG-ACAGA-AGGGCGGGTG-AAAATAT-----T-A-------CAG-------CCA-A-TATATTT-T--CACCC
gi|14015 : aacatgtttgttttatttaaatGGGTG-AAAATAT-----A-A-------TGG-------CTA-T-AAT
gi|14016 : aatatatttgctttatttaaataatttatcattatgTATC-TGATGAGG-AAAGA-GGTGCAGGTG-AAAATAT-----T-A-------AAG-------CCA-G-TATGTCT-T--CACTC
gi|14017 : aatatatttgctttaattgaaatatttAGG-AAAGA-AGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTTCT--CATC
gi|14018 : aatatatttgctatgtttaaataatctatctgaggTGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCAGTGTATGTCT-T--CACCC
gi|14020 : aatatcttgcttatttaaaatatttcatctgaAATGTATC-TTTCAAGATATAAT-GAGGCGGGTA-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14021 : aattatctactttagatagtcaactAATTTATC-TGATGAGG-AAAGA-AGGGTTGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14022 : tgtttgctttgtttaaatAATGTATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----C-A-------TGA--------CA-TATATTTTT-T--CACTC
gi|14023 : cttttttaacctAATGTATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAC-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14024 : ttttttaattGG-GGGGGGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14025 : atttaataattgggtttgggggAATGTTTC-TTTCAAGA-AATAATGAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14026 : ttcagataatcgtctAATTTATT-TTG-AAGA-AAAGA-GAGGCGGGTG-AAAATAT-----T-ATAGAATTTAG-------CTA-T-AATATTG-T--CACCC
gi|14027 : ttaaATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATAT
gi|14028 : aaattATGTATT-TTGTAAGA-ATGGA-GGTGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14029 : aatattAATGTATC-TTACAAGA-AAAAATGAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14030 : tAATGTACT-TTGGAAGA-ATAAA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-G--CACCC
gi|14031 : tAATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CGTCC
gi|14032 : AATGTGTT-TTGTAAGA-ATAGA-GGGGAGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14033 : AATGTATT-TTGCAAGA-ATAGA-CAGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14034 : AATGTACT-TTGTAAGC-ACAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TGTATTT-C--CCCC
gi|14035 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14036 : AATGTATT-TAG-AAGA-AAAGA-GGAGCAGGTG-AAAATAT-----T-A-------TAGAATTTTCCTA-T-AATATTT-T--CACCC
gi|14037 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14038 : AATATATT-TTGTAAGA-ATAGA-GGGGCGGGTGAAAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14039 : AATGTATT-TTGTAAGA-ATAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATT
gi|14040 : AATGTATT-TTGTAGGA-ATAGA-GGAGCGGGTG-AAAATAT-----A-A-------TGG-------CCA-T-AATATTT-A--CACC
gi|14041 : AATGTATT-TTGTAATG-ATAGA-GGGGTGGGTG-AAAATAT-----A-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14042 : AATGTATT-TTGTAAGA-AAAGA-GTGGCAGGTG-AAAATAT-----T-A-------TAG-------TCA-T-TATATTT-T--CACCC
gi|14043 : AATGTATT-TTGTAAGA-ATAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14044 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------AAG-------CCA-T-TATATTT-T--CACCC
gi|14045 : AATGTATT-TTGTAAGA-ATAGA-GGGGTGGGTG-AAATTAT-----T-A-------TAG-------TCA-T-TATATCC-C--CCCCC
gi|14046 : AATGTATG-TTATTAGA-CTAGA-GGGGTGGGTA-AAAATAT-----T-A-------TAG-------CCA-T-TATATTC-C--CCCCC
gi|14047 : AATGTATTCTTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CA
gi|14048 : AATGTATT-TTGTAAGA-ATAGA-GGGGTAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATT
gi|14049 : AATGTATT-TTGTAAGA-AATGA-GAGGTTGGTG-AATATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CA
gi|14050 : ATGTATT-TTGTAAGA-AAAG---GGGCAGATG-AAAATATTATAAT-A-------TAG-------CCG-A-TATATTT-T--CATCC
gi|14051 : TATT-TTGTAAGA-AAAGA-GGGGCGAGTG-AAAATGT-----T-A-------CAG-------CCT-T-TATAATT-T--CACCC
gi|14052 : TATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CAACC
gi|14053 : TATT-TTGTAAGA-AAATA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-TAACACCC
gi|14054 : TAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----T-T-------TAG-------CCA-T-TATATTT-T--CATCC
gi|14055 : GG-GGGGGGGGGG-GGAATAT-----T-A-------TAG-------CAA-T-TATATTT-T--CACCC
gi|14056 : gaggggg-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TTTATTT-T--CCCCC
gi|14057 : aggggatgAGA-AAAAATGAGGCAGGTG-AAAATAT-----T-G-------TAG-------CCA-T-TATACTT-T--CATCC
gi|14058 : A-ATAAT-GAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14059 : gaA-AAAAT-GAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14060 : A-GGGG--GGTG-AAAATTT-----T-A-------TAG-------CTA-T-TATATTT-T--CACCC
gi|14061 : aacA-ACAGA-GG--TGGGTG-AAAATAT-----T-A-------TAG-------CTA-G-TATATTT-T--CACC
gi|14062 : AGA-GGGG--GGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14063 : AGA-GGGATGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14064 : AGA-GGGGTG--TG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14065 : AGA-GGAGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTC-C--CCCCC
gi|14066 : AGA-GGGG--GGTG-AAAATAT-----T-A-------CAG-------CCA-T-TATATTT-T--CACCC
gi|14067 : AGA-GGGG---GTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-A--CACCC
gi|14068 : AGA-GGGG--GATG-AAAATAT-----T-A-------TAG-------CTA-T-TATATTT-T--CACCC
gi|14069 : AGA-GGGGCGTGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATA-TT-T--CACCC
gi|14070 : AGA-GAGG--GGTG-AAATTAT-----T-A-------TAG-------CCA-A-TATATTT-T--TACC
gi|14071 : -GAGGCAGGTG-AAAATAT-----TTA-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14072 : CAGGTG-AAAATAT-----T-A-------TGG-------CCA-T-TATATTT-T--CACCC
gi|14073 : CGGGTG-AAAATAT-----T-A-------TGG-------CCA-T-TATATTT-T--CACCC
gi|14074 : GGTTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14019 ): AATGTGTTTGATTTGTATAAATAATTTATCTGATGAGGAAAGAAGGGTGGGTGAAAATAT
Unaligned ( gi|14013 ): AATATGTTTTGCTTTATTTAAATATTTTCTCTGATGAGGAAAGAAGTGCGGGTGAAAATATAATA
Unaligned ( gi|14003 ): AATATGTTTGCTTTGTTTAAATAATTTATTTGATAAGGAAAGAG
Alignments
lowQualScore : 0 0 1 1 0 11111 0 1111111 1111111 0 1 0 00
lowQualScore : . . . . . ..... . ....... ....... . . . ..
lowQualScore : 9 7 0 7 6 44444 5 8888888 8888888 5 1 6 88
consensus : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
Reference ( family-383 ) : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|13999 : TATC-TGATGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14000 : aatatatttgctttattgaaatatttTGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14001 : aatatatttgctttattgaaataatttagctgaTATC-TGATGAGG-AAAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATGTCT-T--CACC
gi|14002 : aatatatttgctttattgaaatatttAATTTATC-TGATGAGG-AAAGA-GGGGTGTGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14004 : aatatatttgctttattgaaatAATTTATC-TGATGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATAT-T--CACCC
gi|14005 : aatatatttgctttattgaaatATTTATC-TGATAAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14006 : aaaatatttgctttattgaaatgTATC-TGATGAGG-AAAGA-GGGACGGGTG-AGAATAT-----T-A-------TAG-------CCA-G-TATGTCT-T--TACCC
gi|14007 : aatatatttgctttattgaaatatttTGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-A-TATATTT-T--CACCC
gi|14008 : aatatatttgctttattaaaataatttaactgaAATTTATT-TGATGAGG-AGAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------TCA-A-TATATTT-T--CACCC
gi|14009 : aatatgttggctttattttaatAATTTATC-TGATGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14010 : aatatgtttgctttgtttaaatAATTTATC-TGACGAGG-AAAGA-TGGGCGGGTG-AAAATAT-----T-A-------TTG-------CCA-G-TATATTT-T--CACCC
gi|14011 : aatacatttgctttactgaaatTATC-TGATGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATGTTT-T--CACCC
gi|14012 : aatatatttgctttattgaaatattttttTGAGG-AAAGA-GGGGCGAATG-AAAATAT-----T-A-------TAA-------CCA-A-TATATTT-T--CACCC
gi|14014 : aatatgtttgctttatttaaataatttctctgaAATTTATC-TGACGAGG-ACAGA-AGGGCGGGTG-AAAATAT-----T-A-------CAG-------CCA-A-TATATTT-T--CACCC
gi|14015 : aacatgtttgttttatttaaatAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14016 : aatatatttgctttatttaaataatttatcattatgTATC-TGATGAGG-AAAGA-GGTGCAGGTG-AAAATAT-----T-A-------AAG-------CCA-G-TATGTCT-T--CACTC
gi|14017 : aatatatttgctttaattgaaatatttAGG-AAAGA-AGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTTCT--CATC
gi|14018 : aatatatttgctatgtttaaataatctatctgaggTGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCAGTGTATGTCT-T--CACCC
gi|14020 : aatatcttgcttatttaaaatatttcatctgaAATGTATC-TTTCAAGATATAAT-GAGGCGGGTA-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14021 : aattatctactttagatagtcaactAATTTATC-TGATGAGG-AAAGA-AGGGTTGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14022 : tgtttgctttgtttaaatAATGTATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----C-A-------T-G-------ACA-TATATTTTT-T--CACTC
gi|14023 : cttttttaacctAATGTATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAC-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14024 : ttttttaattGG-GGGGGGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14025 : atttaataattgggtttgggggAATGTTTC-TTTCAAGA-AATAATGAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14026 : ttcagataatcgtctAATTTATT-TTG-AAGA-AAAGA-GAGGCGGGTG-AAAATAT-----T-ATAGAATTTAG-------CTA-T-AATATTG-T--CACCC
gi|14027 : ttaaATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATAT
gi|14028 : aaattATGTATT-TTGTAAGA-ATGGA-GGTGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14029 : aatattAATGTATC-TTACAAGA-AAAAATGAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14030 : tAATGTACT-TTGGAAGA-ATAAA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-G--CACCC
gi|14031 : tAATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CGTCC
gi|14032 : AATGTGTT-TTGTAAGA-ATAGA-GGGGAGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14033 : AATGTATT-TTGCAAGA-ATAGA-CAGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14034 : AATGTACT-TTGTAAGC-ACAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TGTATTT-C--CCCC
gi|14035 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14036 : AATGTATT-TAG-AAGA-AAAGA-GGAGCAGGTG-AAAATAT-----T-A-------TAGAATTTTCCTA-T-AATATTT-T--CACCC
gi|14037 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14038 : AATATATT-TTGTAAGA-ATAGA-GGGGCGGGTGAAAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14039 : AATGTATT-TTGTAAGA-ATAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATT
gi|14040 : AATGTATT-TTGTAGGA-ATAGA-GGAGCGGGTG-AAAATAT-----A-A-------TGG-------CCA-T-AATATTT-A--CACC
gi|14041 : AATGTATT-TTGTAATG-ATAGA-GGGGTGGGTG-AAAATAT-----A-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14042 : AATGTATT-TTGTAAGA-AAAGA-GTGGCAGGTG-AAAATAT-----T-A-------TAG-------TCA-T-TATATTT-T--CACCC
gi|14043 : AATGTATT-TTGTAAGA-ATAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14044 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------AAG-------CCA-T-TATATTT-T--CACCC
gi|14045 : AATGTATT-TTGTAAGA-ATAGA-GGGGTGGGTG-AAATTAT-----T-A-------TAG-------TCA-T-TATATCC-C--CCCCC
gi|14046 : AATGTATG-TTATTAGA-CTAGA-GGGGTGGGTA-AAAATAT-----T-A-------TAG-------CCA-T-TATATTC-C--CCCCC
gi|14047 : AATGTATTCTTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CA
gi|14048 : AATGTATT-TTGTAAGA-ATAGA-GGGGTAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATT
gi|14049 : AATGTATT-TTGTAAGA-AATGA-GAGGTTGGTG-AATATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CA
gi|14050 : ATGTATT-TTGTAAGA-AAAG---GGGCAGATG-AAAATATTATAAT-A-------TAG-------CCG-A-TATATTT-T--CATCC
gi|14051 : TATT-TTGTAAGA-AAAGA-GGGGCGAGTG-AAAATGT-----T-A-------CAG-------CCT-T-TATAATT-T--CACCC
gi|14052 : TATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CAACC
gi|14053 : TATT-TTGTAAGA-AAATA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-TAACACCC
gi|14054 : TAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----T-T-------TAG-------CCA-T-TATATTT-T--CATCC
gi|14055 : GG-GGGGGGGGGG-GGAATAT-----T-A-------TAG-------CAA-T-TATATTT-T--CACCC
gi|14056 : gaggggg-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TTTATTT-T--CCCCC
gi|14057 : aggggatgAGA-AAAAATGAGGCAGGTG-AAAATAT-----T-G-------TAG-------CCA-T-TATACTT-T--CATCC
gi|14058 : A-ATAAT-GAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14059 : gaA-AAAAT-GAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14060 : A-GGGG--GGTG-AAAATTT-----T-A-------TAG-------CTA-T-TATATTT-T--CACCC
gi|14061 : aacA-ACAGA-GG--TGGGTG-AAAATAT-----T-A-------TAG-------CTA-G-TATATTT-T--CACC
gi|14062 : AGA-GGGG--GGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14063 : AGA-GGGATGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14064 : AGA-GGGGTG--TG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14065 : AGA-GGAGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTC-C--CCCCC
gi|14066 : AGA-GGGG--GGTG-AAAATAT-----T-A-------CAG-------CCA-T-TATATTT-T--CACCC
gi|14067 : AGA-GGGG---GTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-A--CACCC
gi|14068 : AGA-GGGG--GATG-AAAATAT-----T-A-------TAG-------CTA-T-TATATTT-T--CACCC
gi|14069 : AGA-GGGGCGTGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATA-TT-T--CACCC
gi|14070 : AGA-GAGG--GGTG-AAATTAT-----T-A-------TAG-------CCA-A-TATATTT-T--TACC
gi|14071 : -GAGGCAGGTG-AAAATAT-----TTA-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14072 : CAGGTG-AAAATAT-----T-A-------TGG-------CCA-T-TATATTT-T--CACCC
gi|14073 : CGGGTG-AAAATAT-----T-A-------TGG-------CCA-T-TATATTT-T--CACCC
gi|14074 : GGTTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
blockSeqs : A T TATAA TAGAATT AATTTTC G
blockSeqs : A T . . . A
blockSeqs : A T . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : G . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : C . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : T . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : A . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : C . . . . .
blockSeqs : T . . . . .
blockSeqs : A . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : A . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : T . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : A . . . . .
blockSeqs : T . . . . .
blockSeqs : A . . . . .
blockSeqs : C . . . . .
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blockSeqCons :
originalCons : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
finalCons : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14019 ): AATGTGTTTGATTTGTATAAATAATTTATCTGATGAGGAAAGAAGGGTGGGTGAAAATAT
Unaligned ( gi|14013 ): AATATGTTTTGCTTTATTTAAATATTTTCTCTGATGAGGAAAGAAGTGCGGGTGAAAATATAATA
Unaligned ( gi|14003 ): AATATGTTTGCTTTGTTTAAATAATTTATTTGATAAGGAAAGAG
Alignments
lowQualScore : 0 0 1 1 0 11111 0 1111111 1111111 0 1 0 00
lowQualScore : . . . . . ..... . ....... ....... . . . ..
lowQualScore : 9 7 0 7 6 44444 5 8888888 8888888 5 1 6 88
consensus : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
Reference ( family-383 ) : AATGTATT-TTGTAAGA-ANAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|13999 : TATC-TGATGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14000 : aatatatttgctttattgaaatatttTGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14001 : aatatatttgctttattgaaataatttagctgaTATC-TGATGAGG-AAAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATGTCT-T--CACC
gi|14002 : aatatatttgctttattgaaatatttAATTTATC-TGATGAGG-AAAGA-GGGGTGTGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14004 : aatatatttgctttattgaaatAATTTATC-TGATGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATAT-T--CACCC
gi|14005 : aatatatttgctttattgaaatATTTATC-TGATAAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14006 : aaaatatttgctttattgaaatgTATC-TGATGAGG-AAAGA-GGGACGGGTG-AGAATAT-----T-A-------TAG-------CCA-G-TATGTCT-T--TACCC
gi|14007 : aatatatttgctttattgaaatatttTGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-A-TATATTT-T--CACCC
gi|14008 : aatatatttgctttattaaaataatttaactgaAATTTATT-TGATGAGG-AGAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------TCA-A-TATATTT-T--CACCC
gi|14009 : aatatgttggctttattttaatAATTTATC-TGATGAGG-AAAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14010 : aatatgtttgctttgtttaaatAATTTATC-TGACGAGG-AAAGA-TGGGCGGGTG-AAAATAT-----T-A-------TTG-------CCA-G-TATATTT-T--CACCC
gi|14011 : aatacatttgctttactgaaatTATC-TGATGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-G-TATGTTT-T--CACCC
gi|14012 : aatatatttgctttattgaaatattttttTGAGG-AAAGA-GGGGCGAATG-AAAATAT-----T-A-------TAA-------CCA-A-TATATTT-T--CACCC
gi|14014 : aatatgtttgctttatttaaataatttctctgaAATTTATC-TGACGAGG-ACAGA-AGGGCGGGTG-AAAATAT-----T-A-------CAG-------CCA-A-TATATTT-T--CACCC
gi|14015 : aacatgtttgttttatttaaatAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14016 : aatatatttgctttatttaaataatttatcattatgTATC-TGATGAGG-AAAGA-GGTGCAGGTG-AAAATAT-----T-A-------AAG-------CCA-G-TATGTCT-T--CACTC
gi|14017 : aatatatttgctttaattgaaatatttAGG-AAAGA-AGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTTCT--CATC
gi|14018 : aatatatttgctatgtttaaataatctatctgaggTGAGG-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCAGTGTATGTCT-T--CACCC
gi|14020 : aatatcttgcttatttaaaatatttcatctgaAATGTATC-TTTCAAGATATAAT-GAGGCGGGTA-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14021 : aattatctactttagatagtcaactAATTTATC-TGATGAGG-AAAGA-AGGGTTGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14022 : tgtttgctttgtttaaatAATGTATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----C-A-------T-G-------ACA-TATATTTTT-T--CACTC
gi|14023 : cttttttaacctAATGTATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAC-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14024 : ttttttaattGG-GGGGGGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14025 : atttaataattgggtttgggggAATGTTTC-TTTCAAGA-AATAATGAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14026 : ttcagataatcgtctAATTTATT-TTG-AAGA-AAAGA-GAGGCGGGTG-AAAATAT-----T-ATAGAATTTAG-------CTA-T-AATATTG-T--CACCC
gi|14027 : ttaaATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATAT
gi|14028 : aaattATGTATT-TTGTAAGA-ATGGA-GGTGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14029 : aatattAATGTATC-TTACAAGA-AAAAATGAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14030 : tAATGTACT-TTGGAAGA-ATAAA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-G--CACCC
gi|14031 : tAATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CGTCC
gi|14032 : AATGTGTT-TTGTAAGA-ATAGA-GGGGAGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14033 : AATGTATT-TTGCAAGA-ATAGA-CAGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14034 : AATGTACT-TTGTAAGC-ACAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TGTATTT-C--CCCC
gi|14035 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14036 : AATGTATT-TAG-AAGA-AAAGA-GGAGCAGGTG-AAAATAT-----T-A-------TAGAATTTTCCTA-T-AATATTT-T--CACCC
gi|14037 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14038 : AATATATT-TTGTAAGA-ATAGA-GGGGCGGGTGAAAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14039 : AATGTATT-TTGTAAGA-ATAGA-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATT
gi|14040 : AATGTATT-TTGTAGGA-ATAGA-GGAGCGGGTG-AAAATAT-----A-A-------TGG-------CCA-T-AATATTT-A--CACC
gi|14041 : AATGTATT-TTGTAATG-ATAGA-GGGGTGGGTG-AAAATAT-----A-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14042 : AATGTATT-TTGTAAGA-AAAGA-GTGGCAGGTG-AAAATAT-----T-A-------TAG-------TCA-T-TATATTT-T--CACCC
gi|14043 : AATGTATT-TTGTAAGA-ATAGA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACC
gi|14044 : AATGTATT-TTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------AAG-------CCA-T-TATATTT-T--CACCC
gi|14045 : AATGTATT-TTGTAAGA-ATAGA-GGGGTGGGTG-AAATTAT-----T-A-------TAG-------TCA-T-TATATCC-C--CCCCC
gi|14046 : AATGTATG-TTATTAGA-CTAGA-GGGGTGGGTA-AAAATAT-----T-A-------TAG-------CCA-T-TATATTC-C--CCCCC
gi|14047 : AATGTATTCTTGTAAGA-ATAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CA
gi|14048 : AATGTATT-TTGTAAGA-ATAGA-GGGGTAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATT
gi|14049 : AATGTATT-TTGTAAGA-AATGA-GAGGTTGGTG-AATATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CA
gi|14050 : ATGTATT-TTGTAAGA-AAAG---GGGCAGATG-AAAATATTATAAT-A-------TAG-------CCG-A-TATATTT-T--CATCC
gi|14051 : TATT-TTGTAAGA-AAAGA-GGGGCGAGTG-AAAATGT-----T-A-------CAG-------CCT-T-TATAATT-T--CACCC
gi|14052 : TATT-TTGTAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CAACC
gi|14053 : TATT-TTGTAAGA-AAATA-GGGGCAGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-TAACACCC
gi|14054 : TAAGA-AAAGA-GGGGCGGGTG-AAAATAT-----T-T-------TAG-------CCA-T-TATATTT-T--CATCC
gi|14055 : GG-GGGGGGGGGG-GGAATAT-----T-A-------TAG-------CAA-T-TATATTT-T--CACCC
gi|14056 : gaggggg-GGGGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TTTATTT-T--CCCCC
gi|14057 : aggggatgAGA-AAAAATGAGGCAGGTG-AAAATAT-----T-G-------TAG-------CCA-T-TATACTT-T--CATCC
gi|14058 : A-ATAAT-GAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14059 : gaA-AAAAT-GAGGCGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14060 : A-GGGG--GGTG-AAAATTT-----T-A-------TAG-------CTA-T-TATATTT-T--CACCC
gi|14061 : aacA-ACAGA-GG--TGGGTG-AAAATAT-----T-A-------TAG-------CTA-G-TATATTT-T--CACC
gi|14062 : AGA-GGGG--GGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14063 : AGA-GGGATGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
gi|14064 : AGA-GGGGTG--TG-AAAATAT-----T-A-------TAG-------CCA-G-TATATTT-T--CACCC
gi|14065 : AGA-GGAGTGGGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTC-C--CCCCC
gi|14066 : AGA-GGGG--GGTG-AAAATAT-----T-A-------CAG-------CCA-T-TATATTT-T--CACCC
gi|14067 : AGA-GGGG---GTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-A--CACCC
gi|14068 : AGA-GGGG--GATG-AAAATAT-----T-A-------TAG-------CTA-T-TATATTT-T--CACCC
gi|14069 : AGA-GGGGCGTGTG-AAAATAT-----T-A-------TAG-------CCA-T-TATA-TT-T--CACCC
gi|14070 : AGA-GAGG--GGTG-AAATTAT-----T-A-------TAG-------CCA-A-TATATTT-T--TACC
gi|14071 : -GAGGCAGGTG-AAAATAT-----TTA-------TAG-------CCA-T-TATACTT-T--CACCC
gi|14072 : CAGGTG-AAAATAT-----T-A-------TGG-------CCA-T-TATATTT-T--CACCC
gi|14073 : CGGGTG-AAAATAT-----T-A-------TGG-------CCA-T-TATATTT-T--CACCC
gi|14074 : GGTTG-AAAATAT-----T-A-------TAG-------CCA-T-TATATTT-T--CACCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14019 ): AATGTGTTTGATTTGTATAAATAATTTATCTGATGAGGAAAGAAGGGTGGGTGAAAATAT
Unaligned ( gi|14013 ): AATATGTTTTGCTTTATTTAAATATTTTCTCTGATGAGGAAAGAAGTGCGGGTGAAAATATAATA
Unaligned ( gi|14003 ): AATATGTTTGCTTTGTTTAAATAATTTATTTGATAAGGAAAGAG