lowQualScore : 2222222
lowQualScore : 0 55 0 4 1 0 0 00 000 0 0 6 7777777 0
lowQualScore : . .. . . . . . .. ... . . . ....... .
lowQualScore : 5 99 5 2 0 5 5 77 999 6 6 3 5555555 1
consensus : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCANGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATTGTAGTA-GTTTGATGACTGGGAAG
Reference ( gi|163145 ) : AGTCAAACAA-GGGCAATAAC-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ACTGTAGTAGGGTTGATAACTGGGAAG
gi|163165 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAATTTA-GTT-ATTGTAGTAGGGTTGATGACTGGGAAG
gi|163173 : AGTCAAACAA-GGGCAATAAT-TTGCACTA-TATTCATAC-A-A-GAGT--T---ATCTAACTTA-GCT-ATTGTAGTATGTTTGATGACTGGGAAGa
gi|163164 : AGTCAAACAA-GGGAAATAAT-TTGCATTA-TATTTAAGC-A-A-GATT--T---ATCTAACTAA-GTT-ATTGTAGTAGGGTTGATAACTGGGAAG
gi|163158 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCAAAC-A-A-GAGT--T---ATCAAACTAA-GTT-ATTGTAGTAGGGTTGATGACTAGGAAGa
gi|163130 : AGTCAAACAA-GGGCCATAAT-TTGCATTA-TATTCATTC-A-A-GAGT--T---ATCTAGTTTA-GTT-ACTGTAGTAGGTTTGATGACTTGGAAG
gi|163142 : AGTCAAACAA-GGGTCATAAT-TTGCATTA-TATTCAGGC-A-A-GAGT--T---ATCTAACTCA-TTT-ATTGTAGAAGGTTTGATGACTGGGAAGa
gi|163136 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTAATCC-A-A-GAGT--T---ATCTAACTTA-GTT-ATCATAGTATGTTTGATGACTTGGAAG
gi|163163 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCAGGC-A-A-GAGT--T---ATCAAACTTA-GTT-ATTGTAGTAAGTTTGATGA
gi|163179 : AGTCAAGAAA-AGGCAATAAT-TTGCATTAATATTCAGGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATTGTATT-TGGTTGATGACTGGGAAG
gi|163154 : AGTCAAACAA-GGACCATAAT-TTGCATTA-TATTCAAGC-A-A-GAGC--T---ATATCACTTA-GTT-ATTTTAGTATGTTTGATGACTGGGAAGa
gi|163152 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163131 : AGTCAAGCAA-GGGCAATAAT-TTGCATTA-TATTCAAGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATTGTGGTA
gi|163177 : AGTCAAACAA-GGGCAATAAT-TTGTATTA-TATTCAAGC-A-A-GAGT--T---ATCTTACTTA-GTA-ACTGTGGTATATTTGATGACa
gi|163167 : AGTCAAACAG-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163169 : AGTTAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163113 : AATCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163160 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTCACTTA-ATT-AGTTTAGTA
gi|163180 : AGTCAAACAA-GGGCAATACT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163161 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATGTAACTTA-GTT-ATT
gi|163140 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATTC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163182 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-T-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163171 : AGTCAAACAA-GGGCCATAAC-TTGCATTA-TATTCATGC-A-A-GAGT--T---GTCTAACTTA-GTA-ATTGT
gi|163157 : AGTCAAACAA-GGGCAATAAT-TTGTATTA-TATTCATGC-A-A-GAGT--T---ATTTAACTTA-GTT-ATT
gi|163155 : AGTTAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAAT--T---ATCTAACTTA-GTT-ATT
gi|163156 : AGTCAAACAA-GGGCAATAAT-TTGTATTA-TATTCAGGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163132 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-AAGT--T---ATTTAACTTA-GTT-
gi|163174 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTgtt
gi|163172 : AGTCAAACAA-GGGCAATAAT-TTGTATTA-TATTCATGC-A-A-GAGT--T---ATCTAATTTA-ATT-ATT
gi|163153 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTAATCC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163151 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTGAAGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163159 : AGTCAAACAA-GGGCAATAAT-TTGCATTC-TATTCACGC-A-A-GAGT--T---ATCTAACTTG-GTT-ATT
gi|163139 : AATCGAACAA-GGGCAATAAT-TTGCATTA-TATTCAGGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163148 : AGTCAAACAA-GGGCCATAAC-TTGCATTA-TGTTCAAGC-A-A-GAGT--T---ATCTAAC-TA-GTT-ATTGT
gi|163128 : AGTCAAACAA-CGGCAATAAT-TTGCATTA-TATTCAAGC-A-A-GAGT--T---ATCTAACTTA-GTT-
gi|163181 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGTAATCTAATCTAACTTA-GTT-ATT
gi|163138 : AGTCAAACAA-TGGCAATAAT-TTGCATTG-TATTCATGC-A-A-GAGT--A---ATCTAACTTA-GTT-ATT
gi|163135 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTAATCC-A-A-GAGT--T---ATCTAACTTA-ATT-ATT
gi|163133 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAAT--T---ATCCAACTTATGTT-
gi|163143 : AGTCAAACAA-TGGCAATAAT-TTGTATTA-TATTCATGC-A-A-GAGT--T---ATTTAACTTA-GTT-
gi|163137 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCAAGC-A-A-GTAT--T---ATCTAACTTA-GTT-ATT
gi|163144 : AGTCAAACAA-GGGCCATAAT-TTGTATTA-TATTCATGC-A-A-GAGT--T---ATTTAATTTA-GTT-ATT
gi|163129 : AGTCAAACAA-GGGTAATAAT-TTGCATTA-TATTTATGC-A-A-GAGT--T---ATCTAACTTT-ATT-ATT
gi|163175 : AGTCAAACAA-GAGCAATAAT-TTGTATTA-TATTCAGGC-A-A-GAAT--T---ATCTAACTTA-GTT-t
gi|163147 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---AGTTAACTT
gi|163146 : AGTCAAACAA-GGGCGATAAC-TTGCATTA-TATTCA-ACAA-A-GAGT--T---ATCTAACTTA-TTT-ATT
gi|163150 : AGTCAAACAA-GGGCCATCAT-TTGCATTA-TATTAATCC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163134 : AGTCAAACAT-GGGACATAAT-TTGCATTA-TATTTTGGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATTATAATAGACCTGATGA
gi|163176 : AGTCAAACTA-GGGAAATAAT-TTGCATTA-TATTAATCC-A-A-GAGT--T---ATCTGACTTA-G-T-A-TGT-------TTGATGACTAGGAAG
gi|163127 : AGTCAAACAA-GGGCCATAAT-TTGCATTA-T--TCAAGC-A-A-GAGT--T---ATCTAACTTA-GTA-ATTGT
gi|163178 : AGTCAAACAA-GGGCAATAAT-TTGCATAA-TATTCAAAC-A-A-GAGT--T---ATGTAACTTA-GTT-
gi|163126 : AGTCAAACAA-GGGCCATAAT-TTGCATTA-TATTCAAAC-A-A-GAGT--T---ATCGAACTTG-GTT-ATT
gi|163170 : AGTCAAAGAA-CAGCAATAAT-TTGTATTA-TATTCATGC-A-A-GAGT--T---AACTAACTTA-GTT-ATT
gi|163168 : AGTCAGACAA-GGGCAATAAT-CTGCATTA-TATTCAAGC-A-A-GAGT--T---ATATAATTTA-GTT-
gi|163124 : AGTCGAACAA-GGGCAATAAT-TTGCATTA-AATTCA-GC-A-A-GAGT--T---ATCTAACTTA-ATgtt
gi|163141 : AGTCAAACAA-GGGCCATAAT-TTGCATTA-TATTCATGT-A-A-GAGT--A---ATCTAACTTagtt
gi|163162 : AGTCAAACAA-GGGCAATAATATTGCATTA-TAGTCATCC-A-A-GAGT--T---ATTCAACTTA-ATT-ATTgactg
gi|163149 : AGTCAAACAA-GGGCCATAAT-TTGCATTA-TGTTCAAGC-A-A-AAGT--T---ATCTAACGTC-ATT-ATT
gi|163125 : AGTCAAACAA-GGGCCATAAT-TTGCATTA-TATTCAAGC-A-A-GAGT--T---A
gi|163112 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-TATTCATCC-A-A-GA
gi|163114 : AGTAGAACAA-TGGCCATAAT-TTGCATTA-TATTCAATC-A-A-AAGT--T---ATTTAACTTG-----ATTGT-------TTGATAACCCTGAAGtcccagcaaaaagtggttaggttaactgattgtctgttagccctcaa
gi|163166 : AGTCAAACAA-GGGCAATAAT-TTGCATTA-ATTTCAAGC-A-A-GAAT--a
gi|163110 : AGTCAAATAA-TGGTCATAAT-TTGCATTA-AATTTAACC-A-A-GAGT--T---AATTAACTTA-----ATTGT-------TTGATAAC
gi|163121 : AGTCCAACAA-GTGCCATAAT-TTGCATTA-AATTCAGTT-A-A-AATT--T---ATCTAACTTG-ATT-cctga
gi|163119 : AGTCCAACAA-GTGCCATAAT-TTGCATTA-AATTCAGTT-A-A-AATT--T---ATCTAACTTG-ATT-gtctgatatccaaga
gi|163108 : AGTCGAACAA-TGGCCATAAT-TTGCATTT-AATTC-TACCA-A-GAGT--T---ATTTAACTTG-----ATTGT-------TTGATAACgtctgatatccaaga
gi|163107 : AGTCGAACAA-TGGCCGTAAT-TTGCATTA-AATTCAACC-A-A-GAGT--T---AAATAATTTG-----ATTGT-------TTGATAACcctgaa
gi|163115 : AGTCGAACAA-TGGCCATAAT-TTACATTA-AATTCAACT-A-A-GAGT--T---AATTACCTTG-ATT-GTTTGATT--GTTTGATAACcctgaa
gi|163116 : AGTCGAACAA-TGGCCGTAAT-TTGCATTT-GATTCAACC-A-A-GAGT--T---Acctga
gi|163109 : AGTCGAACAA-TGCCCATAAT-TTGCATTC-AATTTAC-C-A-A-GAAT--T---AATTAACTTG-----ATTGT-------TTGATAACattatttgattgtttaataaccctgcaga
gi|163111 : AGTCGAACAA-TTGCCATAAT-TTGCATTA-ATTTCGACC-A-A-GACT--T---AATTAACTTG-ATT-cctgaa
gi|163117 : AGTCGAACAA-TGGCCGTAAT-TTGCATTA-AATTCAATC-A-T-GCGT--T---A---AA-TTA-TTTGATTGT-------TTGATAACgtttgatagccctaaaga
gi|163118 : AGTCGAACAA-TGCCA-TAAT-TTTCATTA-AATTCA-AC-ATA-GAGT--T---AATTAACcctgaa
gi|163123 : AGTCGAACAC-TGGCCATAAT-TTGCATTT-AATTCAACC-A-T-GAGT--T---AATTAAATTatgattgtttgataatcttgaaga
gi|163186 : GTTAAACAA-GGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACT---------TGTAGTAGGGTTGATGACTGGGAAGttctcacttgata
gi|163184 : GTCAAACAA-GGGCAATAAT-TTGCATTA-TATTAATCC-A-A-GAGT--T---ATATAACTTA-GTT-ATCATAGTATGTTTGATGACTGCGAAG
gi|163185 : GTCAAACAA-CGGCAATAAT-TTGTATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATT
gi|163187 : GTCAAACAA-GGGCAATAAT-TTGCATTA-TATTTACGC-A-A-GAGT--T---ATTTAACTCA-GTT-ATT
gi|163183 : GTCGAACAA-TGGCCATAAT-TTGCTTTA-AATTC-TAC-A-AAGAGT--T---AATTAACTTG-----ATTGT-------TTGATAACTATGAAG
gi|163188 : TCAAACAATGGGCAATAAT-TTGCATTA-TATTCATGC-A-A-GAGT--T---ATCTAACTTA-GTT-ATTa
gi|163189 : AACAA-GGGCCATAAT-TTACATTA-TATTCAAGC-A-A-GAAT--T---ATCTAACTTA-GTT-
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|163120 ): AGTCCAACATGGGACATAATTTGAATTAATGTTGGTCAAGATTAATCTGGCTTGATTGTTTGATACTCCTGAAGA
Unaligned ( gi|163122 ): AGTCCAACATGGGACATAATTTGAATTAATGTTGGTCAAGATTAATCTGGCTTGATTGTTTGATACTCCTGAAGA
Alignments
lowQualScore : 111
lowQualScore : 0 0 1 0 1 1 0 0 00 000 0 4 888 1 1
lowQualScore : . . . . . . . . .. ... . . ... . .
lowQualScore : 5 5 0 5 5 0 5 5 77 999 5 8 444 6 6
consensus : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
Reference ( family-358 ) : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
gi|163107 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-A-AATTCAAC-C-A-AGAGT--T---AAATAATTTG-ATT-----------G-T-TTGATAAC
gi|163108 : AGTCGAACAA-TGGCCATAAT-TTGCATT-T-AATTCTAC-C-A-AGAGT--T---ATTTAACTTG-ATT-----------G-T-TTGATAACcctgaa
gi|163109 : AGTCGAACAA-TGCCCATAAT-TTGCATT-C-AATTTAC--C-A-AGAAT--T---AATTAACTTG-ATT-----------G-T-TTGATAACcctgaa
gi|163110 : AGTCAAATAA-TGGTCATAAT-TTGCATT-A-AATTTAAC-C-A-AGAGT--T---AATTAACTTA-ATT-----------G-T-TTGATAACcctgaa
gi|163111 : AGTCGAACAA-TTGCCATAAT-TTGCATT-A-ATTTCGAC-C-A-AGACT--T---AATTAACTTG-ATTGTTcctga
gi|163112 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATC-C-A-AGAtgatagccctaaaga
gi|163113 : AATCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATTtcccagcaaaaagtggttaggttaactgattgtctgttagccctcaa
gi|163114 : AGTAGAACAA-TGGCCATAAT-TTGCATT-A-TATTCAAT-C-A-AAAGT--T---ATTTAACTTG-ATT-----------G-T-TTGATAACCCTGAAG
gi|163115 : AGTCGAACAA-TGGCCATAAT-TTACATT-A-AATTCAAC-T-A-AGAGT--T---AATTACCTTG-ATTGTT-TGAT-T-G-T-TTGATAACa
gi|163116 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-T-GATTCAAC-C-A-AGAGT--T---AATT-ATTTG-ATTGTT-TAAT-A-cctga
gi|163117 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-A-AATTCAAT-C-A-TGCGT--T---A--------A-ATTATT-TGAT-T-G-T-TTGATAACaccctgcaga
gi|163118 : AGTCGAACAA-TGCCA-TAAT-TTTCATT-A-AATTCAA--C-ATAGAGT--T---AATTAACATG-ATTGTT-TGAT-A-A-TCTTGAAGAcctgaa
gi|163119 : AGTCCAACAA-GTGCCATAAT-TTGCATT-A-AATTCAGT-T-A-AAATT--T---ATCTAACTTG-ATTGT
gi|163120 : AGTCCAACAT-GGGACATAAT-TTGAATTAA-TGTT--GGTC-A-AGATT--A---ATCTGGCTTG-ATTGTTctgatatccaaga
gi|163121 : AGTCCAACAA-GTGCCATAAT-TTGCATT-A-AATTCAGT-T-A-AAATT--T---ATCTAACTTG-ATTGTtgatactcctgaaga
gi|163122 : AGTCCAACAT-GGGACATAAT-TTGAATTAA-TGTT--GGTC-A-AGATT--A---ATCTGGCTTG-ATTGTTctgatatccaaga
gi|163123 : AGTCGAACAC-TGGCCATAAT-TTGCATT-T-AATTCAAC-C-A-TGAGT--T---AATTAAATTtgatactcctgaaga
gi|163124 : AGTCGAACAA-GGGCAATAAT-TTGCATT-A-AATTCA-G-C-A-AGAGT--T---ATCTAACTTA-ATttctcacttgata
gi|163125 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---Aagtt
gi|163126 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCAAA-C-A-AGAGT--T---ATCGAACTTG-GTTATT
gi|163127 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-T--TCAAG-C-A-AGAGT--T---ATCTAACTTA-GTAATTGT
gi|163128 : AGTCAAACAA-CGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATCTAACTTA-GTT
gi|163129 : AGTCAAACAA-GGGTAATAAT-TTGCATT-A-TATTTATG-C-A-AGAGT--T---ATCTAACTTT-ATTATT
gi|163130 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCATT-C-A-AGAGT--T---ATCTAGTTTA-GTTACTGTAGT-AGG-T-TTGATGACTTGGAAGt
gi|163131 : AGTCAAGCAA-GGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTGGT-A-a
gi|163132 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AAAGT--T---ATTTAACTTA-GTTGTTa
gi|163133 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAAT--T---ATCCAACTTATGTT
gi|163134 : AGTCAAACAT-GGGACATAAT-TTGCATT-A-TATTTTGG-C-A-AGAGT--T---ATCTAACTTA-GTTATTATAAT-A-GAC-CTGATGA
gi|163135 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-ATTATT
gi|163136 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATCATAGT-ATG-T-TTGATGACTTGGAAG
gi|163137 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGTAT--T---ATCTAACTTA-GTTATT
gi|163138 : AGTCAAACAA-TGGCAATAAT-TTGCATT-G-TATTCATG-C-A-AGAGT--A---ATCTAACTTA-GTTATT
gi|163139 : AATCGAACAA-GGGCAATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163140 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATT-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163141 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCATG-T-A-AGAGT--A---ATCTAACTT
gi|163142 : AGTCAAACAA-GGGTCATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTCA-TTTATTGTAGA-AGG-T-TTGATGACTGGGAAGgactg
gi|163143 : AGTCAAACAA-TGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAACTTA-GTT
gi|163144 : AGTCAAACAA-GGGCCATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAATTTA-GTTATT
gi|163145 : AGTCAAACAA-GGGCAATAAC-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTACTGTAGT-AGG-G-TTGATAACTGGGAAG
gi|163146 : AGTCAAACAA-GGGCGATAAC-TTGCATT-A-TATTCAAC-A-A-AGAGT--T---ATCTAACTTA-TTTATT
gi|163147 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---AGTTAACTT
gi|163148 : AGTCAAACAA-GGGCCATAAC-TTGCATT-A-TGTTCAAG-C-A-AGAGT--T---ATCTAAC-TA-GTTATTGT
gi|163149 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TGTTCAAG-C-A-AAAGT--T---ATCTAACGTC-ATTATT
gi|163150 : AGTCAAACAA-GGGCCATCAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163151 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTGAAG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163152 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163153 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163154 : AGTCAAACAA-GGACCATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGC--T---ATATCACTTA-GTTATTTTAGT-ATG-T-TTGATGACTGGGAAG
gi|163155 : AGTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAAT--T---ATCTAACTTA-GTTATT
gi|163156 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163157 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAACTTA-GTTATT
gi|163158 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAAA-C-A-AGAGT--T---ATCAAACTAA-GTTATTGTAGT-AGG-G-TTGATGACTAGGAAG
gi|163159 : AGTCAAACAA-GGGCAATAAT-TTGCATT-C-TATTCACG-C-A-AGAGT--T---ATCTAACTTG-GTTATT
gi|163160 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTCACTTA-ATTAGTTTAGT-A-
gi|163161 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATGTAACTTA-GTTATT
gi|163162 : AGTCAAACAA-GGGCAATAATATTGCATT-A-TAGTCATC-C-A-AGAGT--T---ATTCAACTTA-ATTATT
gi|163163 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCAAACTTA-GTTATTGTAGTAA-G-T-TTGATGA
gi|163164 : AGTCAAACAA-GGGAAATAAT-TTGCATT-A-TATTTAAG-C-A-AGATT--T---ATCTAACTAA-GTTATTGTAGT-AGG-G-TTGATAACTGGGAAG
gi|163165 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAATTTA-GTTATTGTAGT-AGG-G-TTGATGACTGGGAAGa
gi|163166 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-ATTTCAAG-C-A-AGAAT--a
gi|163167 : AGTCAAACAG-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163168 : AGTCAGACAA-GGGCAATAAT-CTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATATAATTTA-GTTGTT
gi|163169 : AGTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163170 : AGTCAAAGAA-CAGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---AACTAACTTA-GTTATT
gi|163171 : AGTCAAACAA-GGGCCATAAC-TTGCATT-A-TATTCATG-C-A-AGAGT--T---GTCTAACTTA-GTAATTGT
gi|163172 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATCTAATTTA-ATTATT
gi|163173 : AGTCAAACAA-GGGCAATAAT-TTGCACT-A-TATTCATA-C-A-AGAGT--T---ATCTAACTTA-GCTATTGTAGT-ATG-T-TTGATGACTGGGAAG
gi|163174 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTT
gi|163175 : AGTCAAACAA-GAGCAATAAT-TTGTATT-A-TATTCAGG-C-A-AGAAT--T---ATCTAACTTA-GTT
gi|163176 : AGTCAAACTA-GGGAAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTGACTTA-G-TAT---------G-T-TTGATGACTAGGAAG
gi|163177 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCAAG-C-A-AGAGT--T---ATCTTACTTA-GTAACTGTGGT-ATA-T-TTGATGAC
gi|163178 : AGTCAAACAA-GGGCAATAAT-TTGCATA-A-TATTCAAA-C-A-AGAGT--T---ATGTAACTTA-GTT
gi|163179 : AGTCAAGAAA-AGGCAATAAT-TTGCATT-AATATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTATT-T-G-G-TTGATGACTGGGAAG
gi|163180 : AGTCAAACAA-GGGCAATACT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATTa
gi|163181 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGTAATCTAATCTAACTTA-GTTATT
gi|163182 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-T-AGAGT--T---ATCTAACTTA-GTTATT
gi|163183 : GTCGAACAA-TGGCCATAAT-TTGCTTT-A-AATTC-TA-CAA-AGAGT--T---AATTAACTTG-ATT-----------G-T-TTGATAACTATGAAG
gi|163184 : GTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATATAACTTA-GTTATCATAGT-ATG-T-TTGATGACTGCGAAGa
gi|163185 : GTCAAACAA-CGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163186 : GTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAAC--------TTGTAGT-AGG-G-TTGATGACTGGGAAG
gi|163187 : GTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTTACG-C-A-AGAGT--T---ATTTAACTCA-GTTATT
gi|163188 : TCAAACAATGGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163189 : AACAA-GGGCCATAAT-TTACATT-A-TATTCAAG-C-A-AGAAT--T---ATCTAACTTA-GTTTTTG
Alignments
lowQualScore : 111
lowQualScore : 0 0 1 0 1 1 0 0 00 000 0 4 888 1 1
lowQualScore : . . . . . . . . .. ... . . ... . .
lowQualScore : 5 5 0 5 5 0 5 5 77 999 5 8 444 6 6
consensus : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
Reference ( family-358 ) : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
gi|163107 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-A-AATTCAAC-C-A-AGAGT--T---AAATAATTTG-ATT-----------G-T-TTGATAAC
gi|163108 : AGTCGAACAA-TGGCCATAAT-TTGCATT-T-AATTCTAC-C-A-AGAGT--T---ATTTAACTTG-ATT-----------G-T-TTGATAACcctgaa
gi|163109 : AGTCGAACAA-TGCCCATAAT-TTGCATT-C-AATTTAC--C-A-AGAAT--T---AATTAACTTG-ATT-----------G-T-TTGATAACcctgaa
gi|163110 : AGTCAAATAA-TGGTCATAAT-TTGCATT-A-AATTTAAC-C-A-AGAGT--T---AATTAACTTA-ATT-----------G-T-TTGATAACcctgaa
gi|163111 : AGTCGAACAA-TTGCCATAAT-TTGCATT-A-ATTTCGAC-C-A-AGACT--T---AATTAACTTG-ATTGTTcctga
gi|163112 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATC-C-A-AGAtgatagccctaaaga
gi|163113 : AATCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATTtcccagcaaaaagtggttaggttaactgattgtctgttagccctcaa
gi|163114 : AGTAGAACAA-TGGCCATAAT-TTGCATT-A-TATTCAAT-C-A-AAAGT--T---ATTTAACTTG-ATT-----------G-T-TTGATAACCCTGAAG
gi|163115 : AGTCGAACAA-TGGCCATAAT-TTACATT-A-AATTCAAC-T-A-AGAGT--T---AATTACCTTG-ATTGTT-TGAT-T-G-T-TTGATAACa
gi|163116 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-T-GATTCAAC-C-A-AGAGT--T---AATT-ATTTG-ATTGTT-TAAT-A-cctga
gi|163117 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-A-AATTCAAT-C-A-TGCGT--T---A--------A-ATTATT-TGAT-T-G-T-TTGATAACaccctgcaga
gi|163118 : AGTCGAACAA-TGCCA-TAAT-TTTCATT-A-AATTCAA--C-ATAGAGT--T---AATTAACATG-ATTGTT-TGAT-A-A-TCTTGAAGAcctgaa
gi|163119 : AGTCCAACAA-GTGCCATAAT-TTGCATT-A-AATTCAGT-T-A-AAATT--T---ATCTAACTTG-ATTGT
gi|163120 : AGTCCAACAT-GGGACATAAT-TTGAATTAA-TGTT--GGTC-A-AGATT--A---ATCTGGCTTG-ATTGTTctgatatccaaga
gi|163121 : AGTCCAACAA-GTGCCATAAT-TTGCATT-A-AATTCAGT-T-A-AAATT--T---ATCTAACTTG-ATTGTtgatactcctgaaga
gi|163122 : AGTCCAACAT-GGGACATAAT-TTGAATTAA-TGTT--GGTC-A-AGATT--A---ATCTGGCTTG-ATTGTTctgatatccaaga
gi|163123 : AGTCGAACAC-TGGCCATAAT-TTGCATT-T-AATTCAAC-C-A-TGAGT--T---AATTAAATTtgatactcctgaaga
gi|163124 : AGTCGAACAA-GGGCAATAAT-TTGCATT-A-AATTCA-G-C-A-AGAGT--T---ATCTAACTTA-ATttctcacttgata
gi|163125 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---Aagtt
gi|163126 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCAAA-C-A-AGAGT--T---ATCGAACTTG-GTTATT
gi|163127 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-T--TCAAG-C-A-AGAGT--T---ATCTAACTTA-GTAATTGT
gi|163128 : AGTCAAACAA-CGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATCTAACTTA-GTT
gi|163129 : AGTCAAACAA-GGGTAATAAT-TTGCATT-A-TATTTATG-C-A-AGAGT--T---ATCTAACTTT-ATTATT
gi|163130 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCATT-C-A-AGAGT--T---ATCTAGTTTA-GTTACTGTAGT-AGG-T-TTGATGACTTGGAAGt
gi|163131 : AGTCAAGCAA-GGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTGGT-A-a
gi|163132 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AAAGT--T---ATTTAACTTA-GTTGTTa
gi|163133 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAAT--T---ATCCAACTTATGTT
gi|163134 : AGTCAAACAT-GGGACATAAT-TTGCATT-A-TATTTTGG-C-A-AGAGT--T---ATCTAACTTA-GTTATTATAAT-A-GAC-CTGATGA
gi|163135 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-ATTATT
gi|163136 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATCATAGT-ATG-T-TTGATGACTTGGAAG
gi|163137 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGTAT--T---ATCTAACTTA-GTTATT
gi|163138 : AGTCAAACAA-TGGCAATAAT-TTGCATT-G-TATTCATG-C-A-AGAGT--A---ATCTAACTTA-GTTATT
gi|163139 : AATCGAACAA-GGGCAATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163140 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATT-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163141 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCATG-T-A-AGAGT--A---ATCTAACTT
gi|163142 : AGTCAAACAA-GGGTCATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTCA-TTTATTGTAGA-AGG-T-TTGATGACTGGGAAGgactg
gi|163143 : AGTCAAACAA-TGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAACTTA-GTT
gi|163144 : AGTCAAACAA-GGGCCATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAATTTA-GTTATT
gi|163145 : AGTCAAACAA-GGGCAATAAC-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTACTGTAGT-AGG-G-TTGATAACTGGGAAG
gi|163146 : AGTCAAACAA-GGGCGATAAC-TTGCATT-A-TATTCAAC-A-A-AGAGT--T---ATCTAACTTA-TTTATT
gi|163147 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---AGTTAACTT
gi|163148 : AGTCAAACAA-GGGCCATAAC-TTGCATT-A-TGTTCAAG-C-A-AGAGT--T---ATCTAAC-TA-GTTATTGT
gi|163149 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TGTTCAAG-C-A-AAAGT--T---ATCTAACGTC-ATTATT
gi|163150 : AGTCAAACAA-GGGCCATCAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163151 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTGAAG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163152 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163153 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163154 : AGTCAAACAA-GGACCATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGC--T---ATATCACTTA-GTTATTTTAGT-ATG-T-TTGATGACTGGGAAG
gi|163155 : AGTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAAT--T---ATCTAACTTA-GTTATT
gi|163156 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163157 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAACTTA-GTTATT
gi|163158 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAAA-C-A-AGAGT--T---ATCAAACTAA-GTTATTGTAGT-AGG-G-TTGATGACTAGGAAG
gi|163159 : AGTCAAACAA-GGGCAATAAT-TTGCATT-C-TATTCACG-C-A-AGAGT--T---ATCTAACTTG-GTTATT
gi|163160 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTCACTTA-ATTAGTTTAGT-A-
gi|163161 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATGTAACTTA-GTTATT
gi|163162 : AGTCAAACAA-GGGCAATAATATTGCATT-A-TAGTCATC-C-A-AGAGT--T---ATTCAACTTA-ATTATT
gi|163163 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCAAACTTA-GTTATTGTAGTAA-G-T-TTGATGA
gi|163164 : AGTCAAACAA-GGGAAATAAT-TTGCATT-A-TATTTAAG-C-A-AGATT--T---ATCTAACTAA-GTTATTGTAGT-AGG-G-TTGATAACTGGGAAG
gi|163165 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAATTTA-GTTATTGTAGT-AGG-G-TTGATGACTGGGAAGa
gi|163166 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-ATTTCAAG-C-A-AGAAT--a
gi|163167 : AGTCAAACAG-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163168 : AGTCAGACAA-GGGCAATAAT-CTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATATAATTTA-GTTGTT
gi|163169 : AGTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163170 : AGTCAAAGAA-CAGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---AACTAACTTA-GTTATT
gi|163171 : AGTCAAACAA-GGGCCATAAC-TTGCATT-A-TATTCATG-C-A-AGAGT--T---GTCTAACTTA-GTAATTGT
gi|163172 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATCTAATTTA-ATTATT
gi|163173 : AGTCAAACAA-GGGCAATAAT-TTGCACT-A-TATTCATA-C-A-AGAGT--T---ATCTAACTTA-GCTATTGTAGT-ATG-T-TTGATGACTGGGAAG
gi|163174 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTT
gi|163175 : AGTCAAACAA-GAGCAATAAT-TTGTATT-A-TATTCAGG-C-A-AGAAT--T---ATCTAACTTA-GTT
gi|163176 : AGTCAAACTA-GGGAAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTGACTTA-G-TAT---------G-T-TTGATGACTAGGAAG
gi|163177 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCAAG-C-A-AGAGT--T---ATCTTACTTA-GTAACTGTGGT-ATA-T-TTGATGAC
gi|163178 : AGTCAAACAA-GGGCAATAAT-TTGCATA-A-TATTCAAA-C-A-AGAGT--T---ATGTAACTTA-GTT
gi|163179 : AGTCAAGAAA-AGGCAATAAT-TTGCATT-AATATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTATT-T-G-G-TTGATGACTGGGAAG
gi|163180 : AGTCAAACAA-GGGCAATACT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATTa
gi|163181 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGTAATCTAATCTAACTTA-GTTATT
gi|163182 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-T-AGAGT--T---ATCTAACTTA-GTTATT
gi|163183 : GTCGAACAA-TGGCCATAAT-TTGCTTT-A-AATTC-TA-CAA-AGAGT--T---AATTAACTTG-ATT-----------G-T-TTGATAACTATGAAG
gi|163184 : GTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATATAACTTA-GTTATCATAGT-ATG-T-TTGATGACTGCGAAGa
gi|163185 : GTCAAACAA-CGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163186 : GTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAAC--------TTGTAGT-AGG-G-TTGATGACTGGGAAG
gi|163187 : GTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTTACG-C-A-AGAGT--T---ATTTAACTCA-GTTATT
gi|163188 : TCAAACAATGGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163189 : AACAA-GGGCCATAAT-TTACATT-A-TATTCAAG-C-A-AGAAT--T---ATCTAACTTA-GTTTTTG
blockSeqs : A G AG A C
blockSeqs : C G AT . .
blockSeqs : A G AG . .
blockSeqs : A A AG . .
blockSeqs : T A AT . .
blockSeqs : T G AG . .
blockSeqs : A G AA . .
blockSeqs : A G AG . .
blockSeqs : A T AG . .
blockSeqs : A G AT . .
blockSeqs : A T AT . .
blockSeqs : G G AT . .
blockSeqs : G G AG . .
blockSeqs : G G T . .
blockSeqs : G G A . .
blockSeqs : A G T . .
blockSeqs : A G A . .
blockSeqs : A G A . .
blockSeqs : A A A . .
blockSeqs : A G A . .
blockSeqs : T G T . .
blockSeqs : T . . . .
blockSeqs : A . . . .
blockSeqs : T . . . .
blockSeqs : T . .
blockSeqs : G . .
blockSeqs : T . .
blockSeqs : T .
blockSeqs : A .
blockSeqs : T .
blockSeqs : G .
blockSeqs : T
blockSeqs : T
blockSeqs : G
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : A
blockSeqs : T
blockSeqs : A
blockSeqs : A
blockSeqs : T
blockSeqs : A
blockSeqs : T
blockSeqs : T
blockSeqs : A
blockSeqs : T
blockSeqs : G
blockSeqs : T
blockSeqs : A
blockSeqs : C
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : G
blockSeqs : A
blockSeqs : T
blockSeqs : A
blockSeqs : T
blockSeqs : A
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : G
blockSeqs : T
blockSeqs : A
blockSeqs : A
blockSeqs : G
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : C
blockSeqs : T
blockSeqs : A
blockSeqs : .
blockSeqCons : A**
originalCons : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
finalCons : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGTA--G-T-TTGATGACTGGGAAG
Alignments
lowQualScore : 111
lowQualScore : 0 0 1 0 1 1 0 0 00 000 0 4 888 1 1
lowQualScore : . . . . . . . . .. ... . . ... . .
lowQualScore : 5 5 0 5 5 0 5 5 77 999 5 8 444 6 6
consensus : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
Reference ( family-358 ) : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCANG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTAGT-A-G-T-TTGATGACTGGGAAG
gi|163107 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-A-AATTCAAC-C-A-AGAGT--T---AAATAATTTG-ATT-----------G-T-TTGATAAC
gi|163108 : AGTCGAACAA-TGGCCATAAT-TTGCATT-T-AATTCTAC-C-A-AGAGT--T---ATTTAACTTG-ATT-----------G-T-TTGATAACcctgaa
gi|163109 : AGTCGAACAA-TGCCCATAAT-TTGCATT-C-AATTTAC--C-A-AGAAT--T---AATTAACTTG-ATT-----------G-T-TTGATAACcctgaa
gi|163110 : AGTCAAATAA-TGGTCATAAT-TTGCATT-A-AATTTAAC-C-A-AGAGT--T---AATTAACTTA-ATT-----------G-T-TTGATAACcctgaa
gi|163111 : AGTCGAACAA-TTGCCATAAT-TTGCATT-A-ATTTCGAC-C-A-AGACT--T---AATTAACTTG-ATTGTTcctga
gi|163112 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATC-C-A-AGAtgatagccctaaaga
gi|163113 : AATCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATTtcccagcaaaaagtggttaggttaactgattgtctgttagccctcaa
gi|163114 : AGTAGAACAA-TGGCCATAAT-TTGCATT-A-TATTCAAT-C-A-AAAGT--T---ATTTAACTTG-ATT-----------G-T-TTGATAACCCTGAAG
gi|163115 : AGTCGAACAA-TGGCCATAAT-TTACATT-A-AATTCAAC-T-A-AGAGT--T---AATTACCTTG-ATTGTT-TGAT-T-G-T-TTGATAACa
gi|163116 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-T-GATTCAAC-C-A-AGAGT--T---AATT-ATTTG-ATTGTT-TAAT-A-cctga
gi|163117 : AGTCGAACAA-TGGCCGTAAT-TTGCATT-A-AATTCAAT-C-A-TGCGT--T---A--------A-ATTATT-TGAT-T-G-T-TTGATAACaccctgcaga
gi|163118 : AGTCGAACAA-TGCCA-TAAT-TTTCATT-A-AATTCAA--C-ATAGAGT--T---AATTAACATG-ATTGTT-TGAT-A-A-TCTTGAAGAcctgaa
gi|163119 : AGTCCAACAA-GTGCCATAAT-TTGCATT-A-AATTCAGT-T-A-AAATT--T---ATCTAACTTG-ATTGT
gi|163120 : AGTCCAACAT-GGGACATAAT-TTGAATTAA-TGTT--GGTC-A-AGATT--A---ATCTGGCTTG-ATTGTTctgatatccaaga
gi|163121 : AGTCCAACAA-GTGCCATAAT-TTGCATT-A-AATTCAGT-T-A-AAATT--T---ATCTAACTTG-ATTGTtgatactcctgaaga
gi|163122 : AGTCCAACAT-GGGACATAAT-TTGAATTAA-TGTT--GGTC-A-AGATT--A---ATCTGGCTTG-ATTGTTctgatatccaaga
gi|163123 : AGTCGAACAC-TGGCCATAAT-TTGCATT-T-AATTCAAC-C-A-TGAGT--T---AATTAAATTtgatactcctgaaga
gi|163124 : AGTCGAACAA-GGGCAATAAT-TTGCATT-A-AATTCA-G-C-A-AGAGT--T---ATCTAACTTA-ATttctcacttgata
gi|163125 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---Aagtt
gi|163126 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCAAA-C-A-AGAGT--T---ATCGAACTTG-GTTATT
gi|163127 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-T--TCAAG-C-A-AGAGT--T---ATCTAACTTA-GTAATTGT
gi|163128 : AGTCAAACAA-CGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATCTAACTTA-GTT
gi|163129 : AGTCAAACAA-GGGTAATAAT-TTGCATT-A-TATTTATG-C-A-AGAGT--T---ATCTAACTTT-ATTATT
gi|163130 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCATT-C-A-AGAGT--T---ATCTAGTTTA-GTTACTGTAGT-AGG-T-TTGATGACTTGGAAGt
gi|163131 : AGTCAAGCAA-GGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTGGT-A-a
gi|163132 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AAAGT--T---ATTTAACTTA-GTTGTTa
gi|163133 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAAT--T---ATCCAACTTATGTT
gi|163134 : AGTCAAACAT-GGGACATAAT-TTGCATT-A-TATTTTGG-C-A-AGAGT--T---ATCTAACTTA-GTTATTATAAT-A-GAC-CTGATGA
gi|163135 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-ATTATT
gi|163136 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATCATAGT-ATG-T-TTGATGACTTGGAAG
gi|163137 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAAG-C-A-AGTAT--T---ATCTAACTTA-GTTATT
gi|163138 : AGTCAAACAA-TGGCAATAAT-TTGCATT-G-TATTCATG-C-A-AGAGT--A---ATCTAACTTA-GTTATT
gi|163139 : AATCGAACAA-GGGCAATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163140 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATT-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163141 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TATTCATG-T-A-AGAGT--A---ATCTAACTT
gi|163142 : AGTCAAACAA-GGGTCATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTCA-TTTATTGTAGA-AGG-T-TTGATGACTGGGAAGgactg
gi|163143 : AGTCAAACAA-TGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAACTTA-GTT
gi|163144 : AGTCAAACAA-GGGCCATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAATTTA-GTTATT
gi|163145 : AGTCAAACAA-GGGCAATAAC-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTACTGTAGT-AGG-G-TTGATAACTGGGAAG
gi|163146 : AGTCAAACAA-GGGCGATAAC-TTGCATT-A-TATTCAAC-A-A-AGAGT--T---ATCTAACTTA-TTTATT
gi|163147 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---AGTTAACTT
gi|163148 : AGTCAAACAA-GGGCCATAAC-TTGCATT-A-TGTTCAAG-C-A-AGAGT--T---ATCTAAC-TA-GTTATTGT
gi|163149 : AGTCAAACAA-GGGCCATAAT-TTGCATT-A-TGTTCAAG-C-A-AAAGT--T---ATCTAACGTC-ATTATT
gi|163150 : AGTCAAACAA-GGGCCATCAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163151 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTGAAG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163152 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163153 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163154 : AGTCAAACAA-GGACCATAAT-TTGCATT-A-TATTCAAG-C-A-AGAGC--T---ATATCACTTA-GTTATTTTAGT-ATG-T-TTGATGACTGGGAAG
gi|163155 : AGTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAAT--T---ATCTAACTTA-GTTATT
gi|163156 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163157 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATTTAACTTA-GTTATT
gi|163158 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAAA-C-A-AGAGT--T---ATCAAACTAA-GTTATTGTAGT-AGG-G-TTGATGACTAGGAAG
gi|163159 : AGTCAAACAA-GGGCAATAAT-TTGCATT-C-TATTCACG-C-A-AGAGT--T---ATCTAACTTG-GTTATT
gi|163160 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTCACTTA-ATTAGTTTAGT-A-
gi|163161 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATGTAACTTA-GTTATT
gi|163162 : AGTCAAACAA-GGGCAATAATATTGCATT-A-TAGTCATC-C-A-AGAGT--T---ATTCAACTTA-ATTATT
gi|163163 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCAGG-C-A-AGAGT--T---ATCAAACTTA-GTTATTGTAGTAA-G-T-TTGATGA
gi|163164 : AGTCAAACAA-GGGAAATAAT-TTGCATT-A-TATTTAAG-C-A-AGATT--T---ATCTAACTAA-GTTATTGTAGT-AGG-G-TTGATAACTGGGAAG
gi|163165 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAATTTA-GTTATTGTAGT-AGG-G-TTGATGACTGGGAAGa
gi|163166 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-ATTTCAAG-C-A-AGAAT--a
gi|163167 : AGTCAAACAG-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163168 : AGTCAGACAA-GGGCAATAAT-CTGCATT-A-TATTCAAG-C-A-AGAGT--T---ATATAATTTA-GTTGTT
gi|163169 : AGTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163170 : AGTCAAAGAA-CAGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---AACTAACTTA-GTTATT
gi|163171 : AGTCAAACAA-GGGCCATAAC-TTGCATT-A-TATTCATG-C-A-AGAGT--T---GTCTAACTTA-GTAATTGT
gi|163172 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATCTAATTTA-ATTATT
gi|163173 : AGTCAAACAA-GGGCAATAAT-TTGCACT-A-TATTCATA-C-A-AGAGT--T---ATCTAACTTA-GCTATTGTAGT-ATG-T-TTGATGACTGGGAAG
gi|163174 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTT
gi|163175 : AGTCAAACAA-GAGCAATAAT-TTGTATT-A-TATTCAGG-C-A-AGAAT--T---ATCTAACTTA-GTT
gi|163176 : AGTCAAACTA-GGGAAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATCTGACTTA-G-TAT---------G-T-TTGATGACTAGGAAG
gi|163177 : AGTCAAACAA-GGGCAATAAT-TTGTATT-A-TATTCAAG-C-A-AGAGT--T---ATCTTACTTA-GTAACTGTGGT-ATA-T-TTGATGAC
gi|163178 : AGTCAAACAA-GGGCAATAAT-TTGCATA-A-TATTCAAA-C-A-AGAGT--T---ATGTAACTTA-GTT
gi|163179 : AGTCAAGAAA-AGGCAATAAT-TTGCATT-AATATTCAGG-C-A-AGAGT--T---ATCTAACTTA-GTTATTGTATT-T-G-G-TTGATGACTGGGAAG
gi|163180 : AGTCAAACAA-GGGCAATACT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATTa
gi|163181 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGTAATCTAATCTAACTTA-GTTATT
gi|163182 : AGTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-T-AGAGT--T---ATCTAACTTA-GTTATT
gi|163183 : GTCGAACAA-TGGCCATAAT-TTGCTTT-A-AATTC-TA-CAA-AGAGT--T---AATTAACTTG-ATT-----------G-T-TTGATAACTATGAAG
gi|163184 : GTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTAATC-C-A-AGAGT--T---ATATAACTTA-GTTATCATAGT-ATG-T-TTGATGACTGCGAAGa
gi|163185 : GTCAAACAA-CGGCAATAAT-TTGTATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163186 : GTTAAACAA-GGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAAC--------TTGTAGT-AGG-G-TTGATGACTGGGAAG
gi|163187 : GTCAAACAA-GGGCAATAAT-TTGCATT-A-TATTTACG-C-A-AGAGT--T---ATTTAACTCA-GTTATT
gi|163188 : TCAAACAATGGGCAATAAT-TTGCATT-A-TATTCATG-C-A-AGAGT--T---ATCTAACTTA-GTTATT
gi|163189 : AACAA-GGGCCATAAT-TTACATT-A-TATTCAAG-C-A-AGAAT--T---ATCTAACTTA-GTTTTTG