lowQualScore : 1
lowQualScore : 3 00 0 000 2 00 00 0 1111
lowQualScore : . .. . ... . .. .. . ....
lowQualScore : 4 77 3 555 8 66 99 4 4444
consensus : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
Reference ( gi|160781 ) : ACACTGGAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160802 : ACACAGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160814 : gaagagatatgaaaacacaACACAGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160805 : gaagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---TGCAACACA
gi|160763 : gaagagatatgaaaacacaACACTC-AAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160830 : tACACAGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160816 : gaagagatatgaaaatgcaACACAAGAAGAGA--TATGA-AAA---CGCAACACA
gi|160803 : gaagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---TGCAACACA
gi|160801 : gaagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---TGCAACACA
gi|160752 : gaagagatatgaaaacgcaACACAGGAAGAGA--TAGGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160747 : atACACATGAAGAGG--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160748 : aACACAGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160783 : aacacacataagaggtatgaaaacgcaACACTGGAAGATA--TATGA-AAA---CGCAACGCATGA--AGATA--TA-TG----AAAACGCAACACA
gi|160784 : ACACAGGAAGA----TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160884 : ACACAGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160750 : agatatgaaaacgcaACACATGAAGAGA--TATTA-AAA---CACAACACAGGA--AGGGA--TA-TG----AAAACACAACACA
gi|160800 : aACACAGGAAGAGA--TATGA-AAA---CACAACACA
gi|160834 : ggagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---TGCAACACA
gi|160856 : gaagagatatgaaaatgcaACATAGGAAGAGA--TATGA-AAA---CGCAACA
gi|160764 : gaagagatatgaaaatacaACACTCGA-GAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TATTA----AAAACGCAACACA
gi|160770 : tACACATGAAGAGA--TATGA-AAA---CACAACACGGGA--AGTGA--TA-TG----AAAACGCACCACA
gi|160824 : tACACAGGAAGAGA--TATGA-AAA---CGCAATACA
gi|160782 : gaagagatctgaaaacgcaACAC-AGAAGAGA--TATGA-AAA---CACAACACAGGA--AGATA--TA-TA----AAAACGCAACA
gi|160832 : ACACAGGAAGATA--TATGA-AAA---CGCAACACA
gi|160829 : gaagagatatgaaaatgcaACACAGGAAGAGA--TATGA-AAA---CACAACACA
gi|160815 : gaagatatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---CAGAACACA
gi|160844 : gaagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---CGCATCATA
gi|160751 : gaagagatatgaaaacgcaACACTC-AAGAGA--TATGA-AAA---CGCAACACAGGA--AGATA--TA-TG----AAAACGCAACATA
gi|160809 : atACACAGGAAAAGA--TATGA-AAA---TGCAACACA
gi|160847 : gaagagatatgaaaactcaACACGGGAAGAGA--TATGA-AAA---CGCAACA
gi|160876 : gaagagatatgaaaactcaACACGGGAAGAGA--TATGA-AAA---CACAACACA
gi|160785 : aagagatatgaaaacgcaACACAGGAAGA----TATGA-AAA---CGCAACGCAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160880 : ACGCGGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160835 : agagatatgaaaacgcaACACAGGAAGAGA--TATGC-AAA---CACAAC
gi|160836 : gaagagatatgaaaacacaACACAGGAAGAGAATTATGA-AAA---CGCAACACA
gi|160808 : gaagagatatgaaaatgcaACACAAAAAGAGA--TATGA-AAA---CGCAACACA
gi|160804 : gaagagatatgaaaatgcaACACAGGAAGAGA--TATGA-AAA---CACAACACA
gi|160765 : gaaaagatatgaaaatgcaACACTC-AAGAAA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACGCAGCACA
gi|160797 : tACACAGGAAGAGA--TCTGA-AAA---CGCAACACA
gi|160851 : tgaagatatatgaaaacgcaACATAGGAAGAGA--TATGA-AAA---TACAACATA
gi|160768 : gaagagatatgaaaacacaACACGGGAAGAGA--CATGA-AAA---CGCAATACAGGA--ACAGA--CA-TG----AAAACGCAACATA
gi|160757 : tACAC-AGAAAATA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160775 : atACACAGAAAGAGA--TGTGA-AAA---CGCAACACAGAA--AGAGA--TG-TC----AAAACGCAACACA
gi|160878 : tACACGGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160795 : aagacatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---CATAAC
gi|160875 : tgaagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---TGAAACACA
gi|160877 : aagagatatgaaaacgcaACACTGGAAGAGA--TATGA-AAA---CACAACACA
gi|160864 : aagagatatgaaaacgcaACACAGGAAGACA--TATGA-AAA---CGCAAC
gi|160871 : gaagacatatgaaaacacaACACAGGAAGAGA--TATGG-AAA---CGCAACACA
gi|160868 : gaagagatatgggaaacgcaACACAGGAAGATA--CATGA-AAA---CGCAACACA
gi|160831 : gaagagacatgaaaacgcaACACAGGAAGAGA--TATGC-AAG---CACAACACA
gi|160865 : gaagagatatgaaaacgcaACACAGGAAGAGA--TATGA-AAA---TACTACACA
gi|160852 : gaagggatatgaaaacacaACATAGGAAGAGA--TATGA-AAA---CACAACATA
gi|160786 : gaagatatatgaaaacacaACACAGAAAGAGA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACGCAACATA
gi|160749 : ATACAGGAAGAGC--TATGA-AAA---CGCAACATAGGA--AGAGA--TA-TG----AAAACTCAACA
gi|160833 : aACACAGGAAGAGA--TATAA-AAA---CACAACACA
gi|160755 : gaagagaattatgaaaacgcaACACTC-AAGAGA--TATGA-AGA---CGCAACACAGGA--GGAGA--TA-TG----AAAACGCAA
gi|160780 : atACACAGAAAGAGA--TATGA-TTA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160787 : ACACAGGATAAGA--TATGA-AAA---CGCAACACAGGA--TGAAA--TA-TG----AAAACGCAACATA
gi|160863 : ACACAGGAAGACA--TATGA-AAA---CGCAACACA
gi|160789 : gaagacatataaaaacgcaACACAGAAAGAGG--TATGA-AAA---CGCTACACAGAA--AGAGA--CA-TG----AAAACGCAACATA
gi|160853 : ACATAGGAAGATA--TATGA-AAA---CACAACATA
gi|160807 : gaaaagatatgaaaacacaACACAGGAAGAGA--TATGA-AAA---CCCAA
gi|160788 : gaagagatatgaaaatgcaACACAGAGAGAGA--TATGA-AAA---CGCAACACAGGG--AGAGA--TA-TG----AAAACATAA
gi|160879 : ACACAGGAAGAGA--TATAA-AAA---CACAACACA
gi|160806 : agagatatgaaaatgtaACACAGGAAGAGA--TATGA-AAA---C
gi|160759 : gaagagatatgaaaatgcaACAC---AATAGA--TATGA-AAA---CGCAACACAGGA--AGAGAG-TA-TG----AAAACGCAACA
gi|160846 : atacACACGGGAAGAGC--TATGA-AAA---CACAACATA
gi|160837 : gaagagatatgaaaactcaACACAGGAAGAGA--TATGC-AAA---CACAAC
gi|160767 : gaagagatatgaaaacttaACACTAAAA-AGA--TATGA-AAA---CGTAACATAGGA--AGAGA--CA-TG----AAAACGCA
gi|160769 : tACACATGAAGCGA--TATGA-AAA---CGCACCACAGGA--ACGGA--TA-TG----AAAACACAACACA
gi|160849 : tACACAGGAAGAAA--CATGA-AAA---CACAACACA
gi|160760 : gaagaaacatgaaaatgcaACACTC-AAGAGA--TATGA-AAA---CGCAAC-CAAAA--AGAGA--CA-TG----AAAACGCAAC
gi|160845 : atACACAGGAAGAAC--TATGA-AAA---CACAACATA
gi|160771 : gaagagatatgaaaactcgACACTC-AAGAGA--TATGA-ACA---CGCAACACAGGA--AGGAA--TA-TG----AATTCGCAACACA
gi|160766 : tACACTC-AAGAGA--TATGA-AAA---CGCAACACAAAA--AGAAA--TA-TG----AAAACGTGGCA
gi|160793 : tCACTGGAAGAGA--TATGA-AAA---CGCATCACGGGA--AGAGA--TA-TG----AAAACGCAt
gi|160772 : CACTA-AAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TG-AG----GAAACGTAACA
gi|160754 : tgACAGGAAGAGA--TATGA-AAA---CGCAACACA
gi|160794 : atacattcaatatatatgaaaacgcaaaGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160802 : acGAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160814 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160805 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160830 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160816 : GAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160803 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160801 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160800 : GGAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160834 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160856 : GAAGAGA--TATGA-AAA---TACAACATAGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160818 : GAAGAGA--TATGA-AAA---CACAACACA-GA--AGAGA--TA-TG----AAAACACAACACA
gi|160824 : GAAGAGA--TCTGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAATACA
gi|160832 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGATA--TA-TG----AAAACGCAACACA
gi|160829 : GAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160815 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACAGAACACA
gi|160844 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCATCATA
gi|160809 : GAAGAGA--TATGA-AAA---CTCAACACAGGA--AAAGA--TA-TG----AAAATGCAACACA
gi|160847 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160835 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160827 : GAAGAGA--TATGA-AAA---CGCAACACAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160836 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGAATTA-TG----AAAACGCAACACA
gi|160808 : GAAGAGA--TATGA-AAA---TGCAACACAAAA--AGAGA--TA-TG----AAAACGCAACACA
gi|160804 : GAAAAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160797 : GAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TC-TG----AAAACGCAACACA
gi|160851 : tGAAGAGA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAATACAACATA
gi|160795 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACATAAC
gi|160864 : tGAAGACA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAAC
gi|160871 : GAAGAGA--TATGGGAAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160868 : GAAGAGA--CATGA-AAA---CGCAACACAGGA--AGATA--CA-TG----AAAACGCAACACA
gi|160831 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----CAAGCACAACACA
gi|160817 : GAAGAGA--TATGG-AAA---CGCAACTCAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160865 : GAAGGGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATACTACACA
gi|160820 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-GG----AAAACGCAA
gi|160852 : GAAGATA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160828 : GAAGAGA--TATGA-AAA---CGCAACGCAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160833 : GAAGAGAATTATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160822 : GAAGAGA--TATGA-AAA---CGCAACACGGGA--ATATA--TA-TG----AAAACGCAACACA
gi|160863 : GAAGACA--TATAA-AAA---CGCAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160853 : GAAAAGA--TATGA-AAA---CACAACATAGGA--AGATA--TA-TG----AAAACACAACATA
gi|160807 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACCCAA
gi|160819 : GAAGAGA--TATGA-AAA---CACAACACAGGT--AGGGA--TA-TA----AAAACACAACA
gi|160806 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACt
gi|160870 : GAAGAGA--TATGG-AAA---CGCAACACAGGA--AGAAA--TA-AG----AAAACGAAACACA
gi|160846 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGC--TA-TG----AAAACACAACATA
gi|160848 : GAAGAGA--TATGA-AAA---CGAAACACAGGA--AAAGA--TA-TG-----AAACGCAACATA
gi|160837 : GAAGAGA--TATGA-AAA---CTTAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160850 : GAAGAGA--CATGA-AAA---CGCATTACAGGA--AGAGA--CA-TG----AAAACGCAACATA
gi|160798 : GAAGAGA--TATGA-AAA---TGCAACATAGGA--AGAGA--TA-TGAAAAAAAACGCAACATA
gi|160796 : tGAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAAAATAAC
gi|160849 : tGAAGAAA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACACAACACA
gi|160799 : GAAGAGA--TATGA-AAAAAACACAACATAGGA--AGAGA--TA-TGAA--AAAACACAACATA
gi|160845 : tGAAGAGA--TATGA-AAA---CTCGACACAGGA--AGAAC--TA-TG----AAAACACAACATA
gi|160854 : GAAGGGT--TATGA-AAA---CGCAATATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160855 : GAAGAGT--TATGA-AAA---CGCAATATAGGA--AAAGA--TA-TG----AAAACACAACATA
gi|160748 : AAGAGG--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160876 : aacacacatAAGAGA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160878 : AAGACA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160875 : AAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGAAACACA
gi|160877 : AAGAGA--TATGA-AAA---CGCAACACTGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160756 : AAGAAA--TGTGA-AAA---CGCAACACGGGAACAGAGA--TA-TG----AAAACGCAAC
gi|160758 : atatactaAAGAGA--TATGA-AAA---CGCAACAGAGGA--AGAAA--TA-TA----AAAAGGCAAC
gi|160792 : atacattcAAGAGA--TATGA-AAA---CGCAACTCGGGT--AGATA--TA-TG----AAAACGCAACATA
gi|160773 : cactcAAGAGA--TATGA-AAA---CGCAATACGGGA--AGATA--TA-TG----AAAACATAGC
gi|160774 : taaactcAAGAGA--CATGA-AAA---CGCAACACAGT----GAAA--CA-TG----AAAATGCAACA
gi|160880 : tgcactcAGAGA--TATGA-AAA---CGCAACGCGGGA--AGAGA--TA-TG----AAAACGCAACACAt
gi|160879 : AGAGA--TATGA-AAA---TGTAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160884 : AGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160754 : A--TATGA-AAA---CGCAAAACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160806 : atacattcaatatGA--AGAGA--TA-TG----AAAATGCAACACA
Alignments
lowQualScore : 00 0 000 00 00 0 1111
lowQualScore : .. . ... .. .. . ....
lowQualScore : 66 4 777 55 99 4 4444
consensus : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
Reference ( family-238 ) : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160747 : ACACATGAAGAGG--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160748 : aACACAT-AAGAGG--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160749 : aacATACAGGAAGAGC--TATGA-AAA---CGCAACATAGGA--AGAGA--TA-TG----AAAACTCAACA
gi|160750 : aACACATGAAGAGA--TATTA-AAA---CACAACACAGGA--AGGGA--TA-TG----AAAACACAACACA
gi|160751 : aAAGAGA--TATGA-AAA---CGCAACACAGGA--AGATA--TA-TG----AAAACGCAACATA
gi|160752 : atacactcACACAGGAAGAGA--TAGGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160754 : atA--TATGA-AAA---CGCAAAACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160755 : atacattcaatatAAGAGA--TATGA-AGA---CGCAACACAGGA--GGAGA--TA-TG----AAAACGCAA
gi|160756 : atacactcAAGAAA--TGTGA-AAA---CGCAACACGGGAACAGAGA--TA-TG----AAAACGCAAC
gi|160757 : atatactaACACAGAAA-ATA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160758 : atAAGAGA--TATGA-AAA---CGCAACAGAGGA--AGAAA--TA-TA----AAAAGGCAAC
gi|160759 : atacattcACACAC-AATAGA--TATGA-AAA---CGCAACACAGGA--AGAGAG-TA-TG----AAAACGCAACA
gi|160760 : atAAGAGA--TATGA-AAA---CGCAAC-CAAAA--AGAGA--CA-TG----AAAACGCAAC
gi|160763 : atacactcAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160764 : tacactcAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TATTA----AAAACGCAACACA
gi|160765 : tacactcgAAGAAA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACGCAGCACA
gi|160766 : tacactcAAGAGA--TATGA-AAA---CGCAACACAAAA--AGAAA--TA-TG----AAAACGTGGCA
gi|160767 : tacactcAAAAGA--TATGA-AAA---CGTAACATAGGA--AGAGA--CA-TG----AAAACGCAt
gi|160768 : tacactaACACGGGAAGAGA--CATGA-AAA---CGCAATACAGGA--ACAGA--CA-TG----AAAACGCAACATA
gi|160769 : tACACATGAAGCGA--TATGA-AAA---CGCACCACAGGA--ACGGA--TA-TG----AAAACACAACACA
gi|160770 : tACACATGAAGAGA--TATGA-AAA---CACAACACGGGA--AGTGA--TA-TG----AAAACGCACCACA
gi|160771 : tAAGAGA--TATGA-ACA---CGCAACACAGGA--AGGAA--TA-TG----AATTCGCAACACA
gi|160772 : tacactcAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TG-AG----GAAACGTAACA
gi|160773 : tgcactaAAGAGA--TATGA-AAA---CGCAATACGGGA--AGATA--TA-TG----AAAACATAGC
gi|160774 : taaactcAAGAGA--CATGA-AAA---CGCAACACAGT----GAAA--CA-TG----AAAATGCAACA
gi|160775 : tgcactcACACAGAAAGAGA--TGTGA-AAA---CGCAACACAGAA--AGAGA--TG-TC----AAAACGCAACACAt
gi|160780 : tACACAGAAAGAGA--TATGA-TTA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160781 : ACACTGGAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160782 : ACACAG-AAGAGA--TATGA-AAA---CACAACACAGGA--AGATA--TA-TA----AAAACGCAACA
gi|160783 : ACACTGGAAGATA--TATGA-AAA---CGCAACGCATGA--AGATA--TA-TG----AAAACGCAACACA
gi|160784 : ACACAGGAAGA----TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160785 : ACACAGGAAGA----TATGA-AAA---CGCAACGCAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160786 : ACACAGAAAGAGA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACGCAACATA
gi|160787 : ACACAGGATAAGA--TATGA-AAA---CGCAACACAGGA--TGAAA--TA-TG----AAAACGCAACATA
gi|160788 : ACACAGAGAGAGA--TATGA-AAA---CGCAACACAGGG--AGAGA--TA-TG----AAAACATAA
gi|160789 : ACACAGAAAGAGG--TATGA-AAA---CGCTACACAGAA--AGAGA--CA-TG----AAAACGCAACATA
gi|160792 : AAGAGA--TATGA-AAA---CGCAACTCGGGT--AGATA--TA-TG----AAAACGCAACATA
gi|160793 : cactcCACTGGAAGAGA--TATGA-AAA---CGCATCACGGGA--AGAGA--TA-TG----AAAACGCA
gi|160794 : GGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160795 : acGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACATAAC
gi|160796 : tGAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAAAATAAC
gi|160797 : tGAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TC-TG----AAAACGCAACACA
gi|160798 : tGAAGAGA--TATGA-AAA---TGCAACATAGGA--AGAGA--TA-TGAAAAAAAACGCAACATA
gi|160799 : tGAAGAGA--TATGA-AAAAAACACAACATAGGA--AGAGA--TA-TGAA--AAAACACAACATA
gi|160800 : tGGAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160801 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160802 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160803 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160804 : GAAAAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160805 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160806 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAAC
gi|160807 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACCCAA
gi|160808 : GAAGAGA--TATGA-AAA---TGCAACACAAAA--AGAGA--TA-TG----AAAACGCAACACA
gi|160809 : GAAGAGA--TATGA-AAA---CTCAACACAGGA--AAAGA--TA-TG----AAAATGCAACACA
gi|160814 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160815 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACAGAACACA
gi|160816 : GAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160817 : GAAGAGA--TATGG-AAA---CGCAACTCAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160818 : GAAGAGA--TATGA-AAA---CACAACACA-GA--AGAGA--TA-TG----AAAACACAACACA
gi|160819 : GAAGAGA--TATGA-AAA---CACAACACAGGT--AGGGA--TA-TA----AAAACACAACA
gi|160820 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-GG----AAAACGCAAt
gi|160822 : GAAGAGA--TATGA-AAA---CGCAACACGGGA--ATATA--TA-TG----AAAACGCAACACA
gi|160824 : GAAGAGA--TCTGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAATACA
gi|160827 : GAAGAGA--TATGA-AAA---CGCAACACAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160828 : GAAGAGA--TATGA-AAA---CGCAACGCAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160829 : GAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160830 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160831 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----CAAGCACAACACA
gi|160832 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGATA--TA-TG----AAAACGCAACACA
gi|160833 : GAAGAGAATTATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160834 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160835 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160836 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGAATTA-TG----AAAACGCAACACA
gi|160837 : GAAGAGA--TATGA-AAA---CTTAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160844 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCATCATA
gi|160845 : GAAGAGA--TATGA-AAA---CTCGACACAGGA--AGAAC--TA-TG----AAAACACAACATA
gi|160846 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGC--TA-TG----AAAACACAACATA
gi|160847 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160848 : GAAGAGA--TATGA-AAA---CGAAACACAGGA--AAAGA--TA-TG-----AAACGCAACATA
gi|160849 : GAAGAAA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACACAACACA
gi|160850 : GAAGAGA--CATGA-AAA---CGCATTACAGGA--AGAGA--CA-TG----AAAACGCAACATA
gi|160851 : GAAGAGA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAATACAACATA
gi|160852 : GAAGATA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160853 : GAAAAGA--TATGA-AAA---CACAACATAGGA--AGATA--TA-TG----AAAACACAACATA
gi|160854 : GAAGGGT--TATGA-AAA---CGCAATATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160855 : GAAGAGT--TATGA-AAA---CGCAATATAGGA--AAAGA--TA-TG----AAAACACAACATA
gi|160856 : GAAGAGA--TATGA-AAA---TACAACATAGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160863 : GAAGACA--TATAA-AAA---CGCAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160864 : GAAGACA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAAC
gi|160865 : GAAGGGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATACTACACA
gi|160868 : GAAGAGA--CATGA-AAA---CGCAACACAGGA--AGATA--CA-TG----AAAACGCAACACA
gi|160870 : GAAGAGA--TATGG-AAA---CGCAACACAGGA--AGAAA--TA-AG----AAAACGAAACACA
gi|160871 : GAAGAGA--TATGGGAAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160875 : AAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGAAACACA
gi|160876 : AAGAGA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160877 : AAGAGA--TATGA-AAA---CGCAACACTGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160878 : AAGACA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160879 : AGAGA--TATGA-AAA---TGTAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160880 : AGAGA--TATGA-AAA---CGCAACGCGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160884 : AGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
Alignments
lowQualScore : 00 0 000 00 00 0 1111
lowQualScore : .. . ... .. .. . ....
lowQualScore : 66 4 777 55 99 4 4444
consensus : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
Reference ( family-238 ) : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160747 : ACACATGAAGAGG--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160748 : aACACAT-AAGAGG--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160749 : aacATACAGGAAGAGC--TATGA-AAA---CGCAACATAGGA--AGAGA--TA-TG----AAAACTCAACA
gi|160750 : aACACATGAAGAGA--TATTA-AAA---CACAACACAGGA--AGGGA--TA-TG----AAAACACAACACA
gi|160751 : aAAGAGA--TATGA-AAA---CGCAACACAGGA--AGATA--TA-TG----AAAACGCAACATA
gi|160752 : atacactcACACAGGAAGAGA--TAGGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160754 : atA--TATGA-AAA---CGCAAAACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160755 : atacattcaatatAAGAGA--TATGA-AGA---CGCAACACAGGA--GGAGA--TA-TG----AAAACGCAA
gi|160756 : atacactcAAGAAA--TGTGA-AAA---CGCAACACGGGAACAGAGA--TA-TG----AAAACGCAAC
gi|160757 : atatactaACACAGAAA-ATA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160758 : atAAGAGA--TATGA-AAA---CGCAACAGAGGA--AGAAA--TA-TA----AAAAGGCAAC
gi|160759 : atacattcACACAC-AATAGA--TATGA-AAA---CGCAACACAGGA--AGAGAG-TA-TG----AAAACGCAACA
gi|160760 : atAAGAGA--TATGA-AAA---CGCAAC-CAAAA--AGAGA--CA-TG----AAAACGCAAC
gi|160763 : atacactcAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160764 : tacactcAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TATTA----AAAACGCAACACA
gi|160765 : tacactcgAAGAAA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACGCAGCACA
gi|160766 : tacactcAAGAGA--TATGA-AAA---CGCAACACAAAA--AGAAA--TA-TG----AAAACGTGGCA
gi|160767 : tacactcAAAAGA--TATGA-AAA---CGTAACATAGGA--AGAGA--CA-TG----AAAACGCAt
gi|160768 : tacactaACACGGGAAGAGA--CATGA-AAA---CGCAATACAGGA--ACAGA--CA-TG----AAAACGCAACATA
gi|160769 : tACACATGAAGCGA--TATGA-AAA---CGCACCACAGGA--ACGGA--TA-TG----AAAACACAACACA
gi|160770 : tACACATGAAGAGA--TATGA-AAA---CACAACACGGGA--AGTGA--TA-TG----AAAACGCACCACA
gi|160771 : tAAGAGA--TATGA-ACA---CGCAACACAGGA--AGGAA--TA-TG----AATTCGCAACACA
gi|160772 : tacactcAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TG-AG----GAAACGTAACA
gi|160773 : tgcactaAAGAGA--TATGA-AAA---CGCAATACGGGA--AGATA--TA-TG----AAAACATAGC
gi|160774 : taaactcAAGAGA--CATGA-AAA---CGCAACACAGT----GAAA--CA-TG----AAAATGCAACA
gi|160775 : tgcactcACACAGAAAGAGA--TGTGA-AAA---CGCAACACAGAA--AGAGA--TG-TC----AAAACGCAACACAt
gi|160780 : tACACAGAAAGAGA--TATGA-TTA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160781 : ACACTGGAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160782 : ACACAG-AAGAGA--TATGA-AAA---CACAACACAGGA--AGATA--TA-TA----AAAACGCAACA
gi|160783 : ACACTGGAAGATA--TATGA-AAA---CGCAACGCATGA--AGATA--TA-TG----AAAACGCAACACA
gi|160784 : ACACAGGAAGA----TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160785 : ACACAGGAAGA----TATGA-AAA---CGCAACGCAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160786 : ACACAGAAAGAGA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACGCAACATA
gi|160787 : ACACAGGATAAGA--TATGA-AAA---CGCAACACAGGA--TGAAA--TA-TG----AAAACGCAACATA
gi|160788 : ACACAGAGAGAGA--TATGA-AAA---CGCAACACAGGG--AGAGA--TA-TG----AAAACATAA
gi|160789 : ACACAGAAAGAGG--TATGA-AAA---CGCTACACAGAA--AGAGA--CA-TG----AAAACGCAACATA
gi|160792 : AAGAGA--TATGA-AAA---CGCAACTCGGGT--AGATA--TA-TG----AAAACGCAACATA
gi|160793 : cactcCACTGGAAGAGA--TATGA-AAA---CGCATCACGGGA--AGAGA--TA-TG----AAAACGCA
gi|160794 : GGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160795 : acGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACATAAC
gi|160796 : tGAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAAAATAAC
gi|160797 : tGAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TC-TG----AAAACGCAACACA
gi|160798 : tGAAGAGA--TATGA-AAA---TGCAACATAGGA--AGAGA--TA-TGAAAAAAAACGCAACATA
gi|160799 : tGAAGAGA--TATGA-AAAAAACACAACATAGGA--AGAGA--TA-TGAA--AAAACACAACATA
gi|160800 : tGGAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160801 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160802 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160803 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160804 : GAAAAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160805 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160806 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAAC
gi|160807 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACCCAA
gi|160808 : GAAGAGA--TATGA-AAA---TGCAACACAAAA--AGAGA--TA-TG----AAAACGCAACACA
gi|160809 : GAAGAGA--TATGA-AAA---CTCAACACAGGA--AAAGA--TA-TG----AAAATGCAACACA
gi|160814 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160815 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACAGAACACA
gi|160816 : GAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160817 : GAAGAGA--TATGG-AAA---CGCAACTCAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160818 : GAAGAGA--TATGA-AAA---CACAACACA-GA--AGAGA--TA-TG----AAAACACAACACA
gi|160819 : GAAGAGA--TATGA-AAA---CACAACACAGGT--AGGGA--TA-TA----AAAACACAACA
gi|160820 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-GG----AAAACGCAAt
gi|160822 : GAAGAGA--TATGA-AAA---CGCAACACGGGA--ATATA--TA-TG----AAAACGCAACACA
gi|160824 : GAAGAGA--TCTGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAATACA
gi|160827 : GAAGAGA--TATGA-AAA---CGCAACACAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160828 : GAAGAGA--TATGA-AAA---CGCAACGCAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160829 : GAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160830 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160831 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----CAAGCACAACACA
gi|160832 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGATA--TA-TG----AAAACGCAACACA
gi|160833 : GAAGAGAATTATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160834 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160835 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160836 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGAATTA-TG----AAAACGCAACACA
gi|160837 : GAAGAGA--TATGA-AAA---CTTAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160844 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCATCATA
gi|160845 : GAAGAGA--TATGA-AAA---CTCGACACAGGA--AGAAC--TA-TG----AAAACACAACATA
gi|160846 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGC--TA-TG----AAAACACAACATA
gi|160847 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160848 : GAAGAGA--TATGA-AAA---CGAAACACAGGA--AAAGA--TA-TG-----AAACGCAACATA
gi|160849 : GAAGAAA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACACAACACA
gi|160850 : GAAGAGA--CATGA-AAA---CGCATTACAGGA--AGAGA--CA-TG----AAAACGCAACATA
gi|160851 : GAAGAGA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAATACAACATA
gi|160852 : GAAGATA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160853 : GAAAAGA--TATGA-AAA---CACAACATAGGA--AGATA--TA-TG----AAAACACAACATA
gi|160854 : GAAGGGT--TATGA-AAA---CGCAATATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160855 : GAAGAGT--TATGA-AAA---CGCAATATAGGA--AAAGA--TA-TG----AAAACACAACATA
gi|160856 : GAAGAGA--TATGA-AAA---TACAACATAGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160863 : GAAGACA--TATAA-AAA---CGCAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160864 : GAAGACA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAAC
gi|160865 : GAAGGGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATACTACACA
gi|160868 : GAAGAGA--CATGA-AAA---CGCAACACAGGA--AGATA--CA-TG----AAAACGCAACACA
gi|160870 : GAAGAGA--TATGG-AAA---CGCAACACAGGA--AGAAA--TA-AG----AAAACGAAACACA
gi|160871 : GAAGAGA--TATGGGAAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160875 : AAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGAAACACA
gi|160876 : AAGAGA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160877 : AAGAGA--TATGA-AAA---CGCAACACTGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160878 : AAGACA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160879 : AGAGA--TATGA-AAA---TGTAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160880 : AGAGA--TATGA-AAA---CGCAACGCGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160884 : AGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
blockSeqs : AAAA
blockSeqs : AA
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blockSeqCons :
originalCons : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
finalCons : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
Alignments
lowQualScore : 00 0 000 00 00 0 1111
lowQualScore : .. . ... .. .. . ....
lowQualScore : 66 4 777 55 99 4 4444
consensus : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
Reference ( family-238 ) : ACACAGGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160747 : ACACATGAAGAGG--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160748 : aACACAT-AAGAGG--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160749 : aacATACAGGAAGAGC--TATGA-AAA---CGCAACATAGGA--AGAGA--TA-TG----AAAACTCAACA
gi|160750 : aACACATGAAGAGA--TATTA-AAA---CACAACACAGGA--AGGGA--TA-TG----AAAACACAACACA
gi|160751 : aAAGAGA--TATGA-AAA---CGCAACACAGGA--AGATA--TA-TG----AAAACGCAACATA
gi|160752 : atacactcACACAGGAAGAGA--TAGGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160754 : atA--TATGA-AAA---CGCAAAACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160755 : atacattcaatatAAGAGA--TATGA-AGA---CGCAACACAGGA--GGAGA--TA-TG----AAAACGCAA
gi|160756 : atacactcAAGAAA--TGTGA-AAA---CGCAACACGGGAACAGAGA--TA-TG----AAAACGCAAC
gi|160757 : atatactaACACAGAAA-ATA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160758 : atAAGAGA--TATGA-AAA---CGCAACAGAGGA--AGAAA--TA-TA----AAAAGGCAAC
gi|160759 : atacattcACACAC-AATAGA--TATGA-AAA---CGCAACACAGGA--AGAGAG-TA-TG----AAAACGCAACA
gi|160760 : atAAGAGA--TATGA-AAA---CGCAAC-CAAAA--AGAGA--CA-TG----AAAACGCAAC
gi|160763 : atacactcAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160764 : tacactcAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TATTA----AAAACGCAACACA
gi|160765 : tacactcgAAGAAA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACGCAGCACA
gi|160766 : tacactcAAGAGA--TATGA-AAA---CGCAACACAAAA--AGAAA--TA-TG----AAAACGTGGCA
gi|160767 : tacactcAAAAGA--TATGA-AAA---CGTAACATAGGA--AGAGA--CA-TG----AAAACGCAt
gi|160768 : tacactaACACGGGAAGAGA--CATGA-AAA---CGCAATACAGGA--ACAGA--CA-TG----AAAACGCAACATA
gi|160769 : tACACATGAAGCGA--TATGA-AAA---CGCACCACAGGA--ACGGA--TA-TG----AAAACACAACACA
gi|160770 : tACACATGAAGAGA--TATGA-AAA---CACAACACGGGA--AGTGA--TA-TG----AAAACGCACCACA
gi|160771 : tAAGAGA--TATGA-ACA---CGCAACACAGGA--AGGAA--TA-TG----AATTCGCAACACA
gi|160772 : tacactcAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TG-AG----GAAACGTAACA
gi|160773 : tgcactaAAGAGA--TATGA-AAA---CGCAATACGGGA--AGATA--TA-TG----AAAACATAGC
gi|160774 : taaactcAAGAGA--CATGA-AAA---CGCAACACAGT----GAAA--CA-TG----AAAATGCAACA
gi|160775 : tgcactcACACAGAAAGAGA--TGTGA-AAA---CGCAACACAGAA--AGAGA--TG-TC----AAAACGCAACACAt
gi|160780 : tACACAGAAAGAGA--TATGA-TTA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160781 : ACACTGGAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160782 : ACACAG-AAGAGA--TATGA-AAA---CACAACACAGGA--AGATA--TA-TA----AAAACGCAACA
gi|160783 : ACACTGGAAGATA--TATGA-AAA---CGCAACGCATGA--AGATA--TA-TG----AAAACGCAACACA
gi|160784 : ACACAGGAAGA----TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160785 : ACACAGGAAGA----TATGA-AAA---CGCAACGCAGGA--AGAGA--TA-TG----AAAACGCAAC
gi|160786 : ACACAGAAAGAGA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACGCAACATA
gi|160787 : ACACAGGATAAGA--TATGA-AAA---CGCAACACAGGA--TGAAA--TA-TG----AAAACGCAACATA
gi|160788 : ACACAGAGAGAGA--TATGA-AAA---CGCAACACAGGG--AGAGA--TA-TG----AAAACATAA
gi|160789 : ACACAGAAAGAGG--TATGA-AAA---CGCTACACAGAA--AGAGA--CA-TG----AAAACGCAACATA
gi|160792 : AAGAGA--TATGA-AAA---CGCAACTCGGGT--AGATA--TA-TG----AAAACGCAACATA
gi|160793 : cactcCACTGGAAGAGA--TATGA-AAA---CGCATCACGGGA--AGAGA--TA-TG----AAAACGCA
gi|160794 : GGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160795 : acGAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACATAAC
gi|160796 : tGAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAAAATAAC
gi|160797 : tGAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TC-TG----AAAACGCAACACA
gi|160798 : tGAAGAGA--TATGA-AAA---TGCAACATAGGA--AGAGA--TA-TGAAAAAAAACGCAACATA
gi|160799 : tGAAGAGA--TATGA-AAAAAACACAACATAGGA--AGAGA--TA-TGAA--AAAACACAACATA
gi|160800 : tGGAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160801 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160802 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160803 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160804 : GAAAAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160805 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160806 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAAC
gi|160807 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACCCAA
gi|160808 : GAAGAGA--TATGA-AAA---TGCAACACAAAA--AGAGA--TA-TG----AAAACGCAACACA
gi|160809 : GAAGAGA--TATGA-AAA---CTCAACACAGGA--AAAGA--TA-TG----AAAATGCAACACA
gi|160814 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160815 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACAGAACACA
gi|160816 : GAAGAGA--TATGA-AAA---CGCAACACAAGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160817 : GAAGAGA--TATGG-AAA---CGCAACTCAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160818 : GAAGAGA--TATGA-AAA---CACAACACA-GA--AGAGA--TA-TG----AAAACACAACACA
gi|160819 : GAAGAGA--TATGA-AAA---CACAACACAGGT--AGGGA--TA-TA----AAAACACAACA
gi|160820 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-GG----AAAACGCAAt
gi|160822 : GAAGAGA--TATGA-AAA---CGCAACACGGGA--ATATA--TA-TG----AAAACGCAACACA
gi|160824 : GAAGAGA--TCTGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAATACA
gi|160827 : GAAGAGA--TATGA-AAA---CGCAACACAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160828 : GAAGAGA--TATGA-AAA---CGCAACGCAGGA----AGA--TA-TG----AAAACGCAACACA
gi|160829 : GAAGATA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160830 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160831 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----CAAGCACAACACA
gi|160832 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGATA--TA-TG----AAAACGCAACACA
gi|160833 : GAAGAGAATTATGA-AAA---CGCAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160834 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGA--TA-TG----AAAATGCAACACA
gi|160835 : GAAGAGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160836 : GAAGAGA--TATGA-AAA---TGCAACACAGGA--AGAGAATTA-TG----AAAACGCAACACA
gi|160837 : GAAGAGA--TATGA-AAA---CTTAACACAGGA--AGAGA--TA-TG----CAAACACAAC
gi|160844 : GAAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCATCATA
gi|160845 : GAAGAGA--TATGA-AAA---CTCGACACAGGA--AGAAC--TA-TG----AAAACACAACATA
gi|160846 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGC--TA-TG----AAAACACAACATA
gi|160847 : GAAGAGA--TATGA-AAA---CTCAACACGGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160848 : GAAGAGA--TATGA-AAA---CGAAACACAGGA--AAAGA--TA-TG-----AAACGCAACATA
gi|160849 : GAAGAAA--CATGA-AAA---TGCAACACAGGA--AGAAA--CA-TG----AAAACACAACACA
gi|160850 : GAAGAGA--CATGA-AAA---CGCATTACAGGA--AGAGA--CA-TG----AAAACGCAACATA
gi|160851 : GAAGAGA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAATACAACATA
gi|160852 : GAAGATA--TATGA-AAA---CACAACATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160853 : GAAAAGA--TATGA-AAA---CACAACATAGGA--AGATA--TA-TG----AAAACACAACATA
gi|160854 : GAAGGGT--TATGA-AAA---CGCAATATAGGA--AGAGA--TA-TG----AAAACACAACATA
gi|160855 : GAAGAGT--TATGA-AAA---CGCAATATAGGA--AAAGA--TA-TG----AAAACACAACATA
gi|160856 : GAAGAGA--TATGA-AAA---TACAACATAGGA--AGAGA--TA-TG----AAAACGCAACA
gi|160863 : GAAGACA--TATAA-AAA---CGCAACACAGGA--AGACA--TA-TG----AAAACGCAACACA
gi|160864 : GAAGACA--TATGA-AAA---CACAACACAGGA--AGACA--TA-TG----AAAACGCAAC
gi|160865 : GAAGGGA--TATGA-AAA---CACAACACAGGA--AGAGA--TA-TG----AAAATACTACACA
gi|160868 : GAAGAGA--CATGA-AAA---CGCAACACAGGA--AGATA--CA-TG----AAAACGCAACACA
gi|160870 : GAAGAGA--TATGG-AAA---CGCAACACAGGA--AGAAA--TA-AG----AAAACGAAACACA
gi|160871 : GAAGAGA--TATGGGAAA---CGCAACACAGGA--AGAGA--TA-TG----GAAACGCAACACA
gi|160875 : AAGAGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAATGAAACACA
gi|160876 : AAGAGA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160877 : AAGAGA--TATGA-AAA---CGCAACACTGGA--AGAGA--TA-TG----AAAACACAACACA
gi|160878 : AAGACA--TATGA-AAA---CGCAACACGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160879 : AGAGA--TATGA-AAA---TGTAACACAGGA--AGAGA--TA-TA----AAAACACAACACA
gi|160880 : AGAGA--TATGA-AAA---CGCAACGCGGGA--AGAGA--TA-TG----AAAACGCAACACA
gi|160884 : AGA--TATGA-AAA---CGCAACACAGGA--AGAGA--TA-TG----AAAACGCAACACA