lowQualScore : 1
lowQualScore : 1 0 0 0000 0 0 0 0 0 1
lowQualScore : . . . .... . . . . . .
lowQualScore : 0 5 5 9999 4 8 1 4 4 6
consensus : TGAAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
Reference ( gi|105335 ) : TAAAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105348 : TAAAA-ATTGGCCCA-GTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105350 : TAAAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAATTGTTAGAAGCTAAAAG-TTA-AT-GACAGA
gi|105337 : TAAAA-ATTGACCAA-GTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-TACAGAC
gi|105317 : TGAAA-ATCTGTCAA-GTG----GTTTCAGAGAA-GAAGTCGTTTGAGGC-AAAAG-TTA-AC-GACGAAC
gi|105318 : TGAAA-ATCTGTCAA-GTG----GTTTCAGAGAA-GAAGTCATTTGAAGC-AGAAG-TTA-AT-TACGGAC
gi|105319 : TGAAA-ATCTGTCAA-GTG----GTTTCAGAGAA-AAAGTCATTTGAAGC-AAAAG-TTA-AT-GATGGA
gi|105345 : TGAAA-ATCAGTCAA-GTG----ATTTT-GACAA-GAAGTCGTTAGAAAC-AAAAG-TTA-AC-GACGGA
gi|105320 : TGAAA-ACCTGTCAA-GTG----GTATCAGAGAA-GAAGTGGTTTGAAGC-AAAAG-TTA-AC-AAC
gi|105346 : TAAAA-ATTTGTCAA-GTG----GTTTCAGAAAA-GAAGTCATTTGAGGC-AATTG-TTA-ACTGACGAAC
gi|105321 : TGAAA-ATTTGTCAA-ACT----GTTTCAGAGTA-GTAGTTATTTGAAGC-AAAAG-TAT-AC-GACGGAC
gi|105327 : TAAAA-ATCTGTCAA-ATG----GTTTCA---GA-GAAGTCGTTTGAAGC-AAAAT-TTA-AG-GA-GGAC
gi|105323 : TGAAA-ATCTGTCAT-GTG----GTTTCAGAGAA-GAAGACGTTTGAAGC-AATTG-TTA-ACTGACAGACggcagac
gi|105339 : TGAAA-ATCTGACAA-GCA----GTTCAAGAGAA-GAAGTTGTTTGAATC-AAAAG-TAA-AT-GATGGAC
gi|105325 : TGAAA-ATCTGTCAA-GTG----GTTTCAGAGAA-GAAGTCGTTTGAAAC-AATTG-TTAGAA-GACAGA
gi|105338 : TGAAA-ATATGTCAA-GCG----GTTTCAGAGAG-GAAGTCGTTTGAAGC-AAAAC-TGA-AC-
gi|105329 : TGAAA-ATCTGTAGA-GCA----GTTTCAGAGAT-GAAGTCGTTTGAAGC-AGAAG-TTA-AT-GAC
gi|105343 : TAAAA-ATCTGTCAA-GTG----GTTTCA---GA-GAAGTCATTTGAAAC-AATTG-TTA-ACAGACAGAC
gi|105328 : TGAAA-GTCTGTCAA-GCC----ATTTCAGAG----AAGTTGTTTGGAGC-AAAAG-TTA-ACGGACGGA
gi|105324 : TGAAA-ATCTGTCAA-GTT----TTTTCAGAGAA-TTAGTCGTTTGAAGC-AAAAGTTTA-AT-GGTGGAC
gi|105349 : TGAAA-ATCTGTCAA-GCA----GTTTCA---GA-GAAGTCATTTAAAGC-AAAAG-TTG-AA-GATGGAagac
gi|105385 : AAAATATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105374 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105373 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105372 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105371 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105394 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105393 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAA-TTA-AC-GACGGAC
gi|105392 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105390 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105389 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACGGAC
gi|105388 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105380 : AAA-ATTGGCCCA-GTA----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105368 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105367 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105366 : AAA-ATTGGTCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105365 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105404 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGAC
gi|105399 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GAAGGAC
gi|105386 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGGTAAAAG-TTA-AC-GACGGAC
gi|105383 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACTGAC
gi|105409 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGA
gi|105407 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTGAAAG-TTA-AC-GACGGAC
gi|105334 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105412 : tgaaaatatatcAAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GATGGAC
gi|105408 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AATGGAC
gi|105379 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-GAAGTTATTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105377 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105376 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105375 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105362 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105360 : AAA-ATTGGCCCA-GTT----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105396 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACAGAC
gi|105395 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-AAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105363 : AAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTTAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105406 : AAA-GTTGGCCCA-ATG----GTTTCAGAGGA-GAAGCTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105381 : AAA-ATTGGTCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAACTAAAAG-TTA-AC-GACAAAC
gi|105391 : AAA-ATTGGCCCA-GTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AA-TACGGAC
gi|105401 : AAA-AT-GGTCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGACgacagac
gi|105397 : AAA-ATTTGCCCA-GTG----GTTTTAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GTCGGAC
gi|105370 : AAA-ATTGGCCCA-TTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCAAAAAG-TTA-AC-GACAGAC
gi|105369 : AAA-ATTGGCCAA-ATG----GTTTCGGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105405 : AAA-ATTGGCCCA-GTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105402 : AAA-ATTGGCAAA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGAC
gi|105387 : AAA-ATTGGCCTA-GTG----GTTTCAGAGGA-GAAGTTGTTGGAA-TTAAAAG-TTA-AC-GACGGAC
gi|105413 : AAA-ATTGGCCAA-GTG----GTTTCAGAGGA-GATGTTGTTAGAAGCTAAAAG-CTA-AT-GACGGAC
gi|105384 : AAA-ATTAGCCCA-ATG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAGG-TTT-AC-GACAGAC
gi|105398 : AAA-ATTGGCCAG-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAATA-TTA-AC-GACAGAC
gi|105400 : AAA-ATTGGCCAA-GTG----GTTTCAGAGGA-GAAGTTATTAGAAGCTAAATG-TTA-AT-GACAGAC
gi|105414 : AAA-ATTGGCACA-GTG----GTTTCAAAGGA-AAAGTTGTTAGAAGC-AAAAG-TTA-AT-GACGGAC
gi|105342 : AAA-ACTGGCCTG-GTG----GTTTTAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105403 : tgaagttctatcAAA-ATTGGCCAA-GTG----GTTTCAGAGAA-GAAATTGTTAGAAGCTAAAAG-TT--AC-AGTGGAC
gi|105410 : AAA-ATTTGCCAA-GTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TCA-AC-GACgacaggc
gi|105341 : AAA-ATTGGC--A------------CAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105359 : tgaagatgtatcAAA-ATCTGTCAA-GTG----GTTTCAGAAAA-GAAGTAGTTTGAAGC-AAAAG-TTA-AC-GACAGA
gi|105358 : AAA-ATCTGTCAA-GTG----GTTTCAG-GGA-TAA--TATTCGAAGC-AAAAG-TTA-CC-GACGGA
gi|105441 : gAA-ATTGGCCCA-GTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105443 : AA-ATTTGCCCA-GTGCATGGTTTCAGAGCA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105322 : AA-ATCTGTCGA-GCG----GTTTCAGAGAA-GAAATCGTCTAAAGC-AAAAG-TTA-AC-AACGGAC
gi|105440 : tggAA-ATCTGTCAA-GCG----GTTTTAGAGAA-GGGGTCGCTTGAAAC-AAAAG-TTA-AC-GACAGAC
gi|105442 : AA-ATCTGTCAA-GTG----GTTTAAGATAA-GAAATCATTTGAAGC-AAAAG-TTA-GA-GAC
gi|105330 : CCACGTG----GTTTTAGAGAA-AAAGATGTTTGAGGC-AAAAG-TTA-AC-GATGGAC
gi|105361 : tgaaactctgA-GCG----GTTTCAGAG----AAGTCGTTTGAAGC-AAAAG-TTA-AC-GACGGAC
gi|105332 : aaaatctttcaA-GTG----GTTTCAGAGAA-GATATCATTTGAAGC-AAAAG-TTA-AC-AACAGAC
gi|105336 : tgaaactttttcgA-ATG----GTTTCAGAG----AAGTCGTTTGAAGA-AAAAG-TTA-AC-AACGGAC
gi|105333 : tgaaaaggtgttaA-GTG----GTTTGGGAAAA-GAAGTCGTTTCAAGC-AAAAG-TTT-AC-GACGGAC
gi|105347 : tgaaaatctattaA-GTG----GTTTCAGAAGAGGAAATCATTTGAAGC-AAAGG-TTA-AT-GAC
gi|105382 : tgaaactctgtgaA-ATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-GAC
gi|105340 : aaaatatgtgaA-ATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-AAC
gi|105446 : tgaaaatatgtgaG----GTTTTAGAGAA-TTAGTCCTTTGAAGC-AAAAA-TTA-AC-GACAGAC
gi|105451 : aatcggttgtcaatc----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105452 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105453 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-TACAGAC
gi|105454 : ----GTTTTAAAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105450 : ----GTTTCAGAGAA-AAAGTTATTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105449 : ----GCTTCAGAGAA-GAAGTCTTTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105351 : tgtaaaaat----GTTTCAGA--A-GAAGTCATTTGAAGC-AAAGG-TTA-AT-GACAGAC
gi|105344 : tgaaaatcc----GTTTCAGAT----AAGTCGTTTGAAGC-AAAAG-TTA-CT-GATGGAC
gi|105326 : tgaaaatctgtca----GTTTTAGAGAA-AAAATCGTCTGAAGC-AAAAG-TTT-AC-GAC
gi|105331 : tgaaaatgtgtgaaatt----GTTTTTGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-GAC
Alignments
lowQualScore : 0 000 1 0000 0 1 0 9 0 0 1
lowQualScore : . ... . .... . . . . . . .
lowQualScore : 5 888 2 9999 4 7 6 6 4 4 6
consensus : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
Reference ( family-232 ) : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105317 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCGTTTGAGGC-AAAAG-TTA-AC-GACGAAC
gi|105318 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCATTTGAAGC-AGAAG-TTA-AT-TACGGAC
gi|105319 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-AAAGTCATTTGAAGC-AAAAG-TTA-AT-GATGGA
gi|105320 : TGAAA-AC---CTGTCAAGTG----GTATCAGAGAA-GAAGTGGTTTGAAGC-AAAAG-TTA-AC-AAC
gi|105321 : TGAAA-AT---TTGTCAAACT----GTTTCAGAGTA-GTAGTTATTTGAAGC-AAAAG-TAT-AC-GACGGAC
gi|105322 : TGGAA-AT---CTGTCGAGCG----GTTTCAGAGAA-GAAATCGTCTAAAGC-AAAAG-TTA-AC-AACGGAC
gi|105323 : TGAAA-AT---CTGTCATGTG----GTTTCAGAGAA-GAAGACGTTTGAAGC-AATTG-TTA-ACTGACAGAC
gi|105324 : TGAAA-AT---CTGTCAAGTT----TTTTCAGAGAA-TTAGTCGTTTGAAGC-AAAAGTTTA-AT-GGTGGAC
gi|105325 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCGTTTGAAAC-AATTG-TTAGAA-GACAGAagac
gi|105326 : TGAAA-AT---GTGTGAAATT----GTTTTAGAGAA-AAAATCGTCTGAAGC-AAAAG-TTT-AC-GAC
gi|105327 : TAAAA-AT---CTGTCAAATG----GTTTCA---GA-GAAGTCGTTTGAAGC-AAAAT-TTA-AG-GA-GGAC
gi|105328 : TGAAA-GT---CTGTCAAGCC----ATTTCAGAG----AAGTTGTTTGGAGC-AAAAG-TTA-ACGGACGGAggcagac
gi|105329 : TGAAA-AT---CTGTAGAGCA----GTTTCAGAGAT-GAAGTCGTTTGAAGC-AGAAG-TTA-AT-GAC
gi|105330 : TGAAA-CT---CTGCCACGTG----GTTTTAGAGAA-AAAGATGTTTGAGGC-AAAAG-TTA-AC-GATGGAC
gi|105332 : TGAAA-CT---TTTTCGAGTG----GTTTCAGAGAA-GATATCATTTGAAGC-AAAAG-TTA-AC-AACAGAC
gi|105333 : TGAAA-AT---CTATTAAGTG----GTTTGGGAAAA-GAAGTCGTTTCAAGC-AAAAG-TTT-AC-GACGGAC
gi|105334 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105335 : tgaaaatatatcTAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105336 : AATG----GTTTCAGAG----AAGTCGTTTGAAGA-AAAAG-TTA-AC-AACGGAC
gi|105337 : tgaaaaggtgttaTAAAA-AT---TGACCAAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-TACAGAC
gi|105338 : TGAAA-AT---ATGTCAAGCG----GTTTCAGAGAG-GAAGTCGTTTGAAGC-AAAAC-TGA-AC-
gi|105339 : TGAAA-AT---CTGACAAGCA----GTTCAAGAGAA-GAAGTTGTTTGAATC-AAAAG-TAA-AT-GATGGAC
gi|105340 : TGAAA-ATATGTGA---AATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-AAC
gi|105341 : AAA-AT---TGGC--A-----------CAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105342 : tgaagatgtatcAAA-AC---TGGCCTGGTG----GTTTTAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105343 : tgaagttctatcTAAAA-AT---CTGTCAAGTG----GTTTCA---GA-GAAGTCATTTGAAAC-AATTG-TTA-ACAGACAGAC
gi|105344 : TGAAA-AT---CTGTC----A----GTTTCAGAT----AAGTCGTTTGAAGC-AAAAG-TTA-CT-GATGGAC
gi|105345 : TGAAA-AT---CAGTCAAGTG----ATTTT-GACAA-GAAGTCGTTAGAAAC-AAAAG-TTA-AC-GACGGA
gi|105346 : TAAAA-AT---TTGTCAAGTG----GTTTCAGAAAA-GAAGTCATTTGAGGC-AATTG-TTA-ACTGACGAAC
gi|105347 : AGTG----GTTTCAGAAGAGGAAATCATTTGAAGC-AAAGG-TTA-AT-GAC
gi|105348 : tgaaactctgtgaTAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105349 : TGAAA-AT---CTGTCAAGCA----GTTTCA---GA-GAAGTCATTTAAAGC-AAAAG-TTG-AA-GATGGA
gi|105350 : TAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAATTGTTAGAAGCTAAAAG-TTA-AT-GACAGA
gi|105351 : TGAAA-AT-------CC--------GTTTCAGA--A-GAAGTCATTTGAAGC-AAAGG-TTA-AT-GACAGAC
gi|105358 : GAAA-AT---CTGTCAAGTG----GTTTCAG-GGA-TAA--TATTCGAAGC-AAAAG-TTA-CC-GACGGA
gi|105359 : AAA-AT---CTGTCAAGTG----GTTTCAGAAAA-GAAGTAGTTTGAAGC-AAAAG-TTA-AC-GACAGA
gi|105360 : AAA-AT---TGGCCCAGTT----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105361 : AGCG----GTTTCAGAG----AAGTCGTTTGAAGC-AAAAG-TTA-AC-GACGGAC
gi|105362 : aaaatctttcaAAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105363 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTTAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105365 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105366 : AAA-AT---TGGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105367 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105368 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105369 : AAA-AT---TGGCCAAATG----GTTTCGGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105370 : AAA-AT---TGGCCCATTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCAAAAAG-TTA-AC-GACAGAC
gi|105371 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105372 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105373 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105374 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105375 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105376 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105377 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105379 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTATTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105380 : AAA-AT---TGGCCCAGTA----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105381 : AAA-AT---TGGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAACTAAAAG-TTA-AC-GACAAAC
gi|105382 : AATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-GAC
gi|105383 : aaaatatgtgaAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACTGAC
gi|105384 : AAA-AT---TAGCCCAATG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAGG-TTT-AC-GACAGAC
gi|105385 : AAATAT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105386 : aAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGGTAAAAG-TTA-AC-GACGGAC
gi|105387 : AAA-AT---TGGCCTAGTG----GTTTCAGAGGA-GAAGTTGTTGGAA-TTAAAAG-TTA-AC-GACGGAC
gi|105388 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105389 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACGGAC
gi|105390 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105391 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AA-TACGGAC
gi|105392 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGACgacagac
gi|105393 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAA-TTA-AC-GACGGAC
gi|105394 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105395 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105396 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACAGAC
gi|105397 : AAA-AT---TTGCCCAGTG----GTTTTAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GTCGGAC
gi|105398 : AAA-AT---TGGCCAGGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAATA-TTA-AC-GACAGAC
gi|105399 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GAAGGAC
gi|105400 : AAA-AT---TGGCCAAGTG----GTTTCAGAGGA-GAAGTTATTAGAAGCTAAATG-TTA-AT-GACAGAC
gi|105401 : AAA-AT----GGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105402 : AAA-AT---TGGCAAAGTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGAC
gi|105403 : AAA-AT---TGGCCAAGTG----GTTTCAGAGAA-GAAATTGTTAGAAGCTAAAAG-TT--AC-AGTGGAC
gi|105404 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGACgacaggc
gi|105405 : AAA-AT---TGGCCCAGTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105406 : AAA-GT---TGGCCCAATG----GTTTCAGAGGA-GAAGCTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105407 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTGAAAG-TTA-AC-GACGGAC
gi|105408 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AATGGAC
gi|105409 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGA
gi|105410 : AAA-AT---TTGCCAAGTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TCA-AC-GAC
gi|105412 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GATGGAC
gi|105413 : AAA-AT---TGGCCAAGTG----GTTTCAGAGGA-GATGTTGTTAGAAGCTAAAAG-CTA-AT-GACGGAC
gi|105414 : AAA-AT---TGGCACAGTG----GTTTCAAAGGA-AAAGTTGTTAGAAGC-AAAAG-TTA-AT-GACGGAC
gi|105440 : AA-AT---CTGTCAAGCG----GTTTTAGAGAA-GGGGTCGCTTGAAAC-AAAAG-TTA-AC-GACAGAC
gi|105441 : AA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105442 : AA-AT---CTGTCAAGTG----GTTTAAGATAA-GAAATCATTTGAAGC-AAAAG-TTA-GA-GAC
gi|105443 : AA-AT---TTGCCCAGTGCATGGTTTCAGAGCA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105446 : G----GTTTTAGAGAA-TTAGTCCTTTGAAGC-AAAAA-TTA-AC-GACAGAC
gi|105449 : aatcggttgtcaatc----GCTTCAGAGAA-GAAGTCTTTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105450 : tgtaaaaat----GTTTCAGAGAA-AAAGTTATTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105451 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105452 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105453 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-TACAGAC
gi|105454 : ----GTTTTAAAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|105331 ): TGAAAATATGTGAAATTGTTTTTGAGAAAAAATCATCTGAAGCAAAAGTTAACGAC
Alignments
lowQualScore : 0 000 1 0000 0 1 0 9 0 0 1
lowQualScore : . ... . .... . . . . . . .
lowQualScore : 5 888 2 9999 4 7 6 6 4 4 6
consensus : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
Reference ( family-232 ) : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105317 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCGTTTGAGGC-AAAAG-TTA-AC-GACGAAC
gi|105318 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCATTTGAAGC-AGAAG-TTA-AT-TACGGAC
gi|105319 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-AAAGTCATTTGAAGC-AAAAG-TTA-AT-GATGGA
gi|105320 : TGAAA-AC---CTGTCAAGTG----GTATCAGAGAA-GAAGTGGTTTGAAGC-AAAAG-TTA-AC-AAC
gi|105321 : TGAAA-AT---TTGTCAAACT----GTTTCAGAGTA-GTAGTTATTTGAAGC-AAAAG-TAT-AC-GACGGAC
gi|105322 : TGGAA-AT---CTGTCGAGCG----GTTTCAGAGAA-GAAATCGTCTAAAGC-AAAAG-TTA-AC-AACGGAC
gi|105323 : TGAAA-AT---CTGTCATGTG----GTTTCAGAGAA-GAAGACGTTTGAAGC-AATTG-TTA-ACTGACAGAC
gi|105324 : TGAAA-AT---CTGTCAAGTT----TTTTCAGAGAA-TTAGTCGTTTGAAGC-AAAAGTTTA-AT-GGTGGAC
gi|105325 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCGTTTGAAAC-AATTG-TTAGAA-GACAGAagac
gi|105326 : TGAAA-AT---GTGTGAAATT----GTTTTAGAGAA-AAAATCGTCTGAAGC-AAAAG-TTT-AC-GAC
gi|105327 : TAAAA-AT---CTGTCAAATG----GTTTCA---GA-GAAGTCGTTTGAAGC-AAAAT-TTA-AG-GA-GGAC
gi|105328 : TGAAA-GT---CTGTCAAGCC----ATTTCAGAG----AAGTTGTTTGGAGC-AAAAG-TTA-ACGGACGGAggcagac
gi|105329 : TGAAA-AT---CTGTAGAGCA----GTTTCAGAGAT-GAAGTCGTTTGAAGC-AGAAG-TTA-AT-GAC
gi|105330 : TGAAA-CT---CTGCCACGTG----GTTTTAGAGAA-AAAGATGTTTGAGGC-AAAAG-TTA-AC-GATGGAC
gi|105332 : TGAAA-CT---TTTTCGAGTG----GTTTCAGAGAA-GATATCATTTGAAGC-AAAAG-TTA-AC-AACAGAC
gi|105333 : TGAAA-AT---CTATTAAGTG----GTTTGGGAAAA-GAAGTCGTTTCAAGC-AAAAG-TTT-AC-GACGGAC
gi|105334 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105335 : tgaaaatatatcTAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105336 : AATG----GTTTCAGAG----AAGTCGTTTGAAGA-AAAAG-TTA-AC-AACGGAC
gi|105337 : tgaaaaggtgttaTAAAA-AT---TGACCAAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-TACAGAC
gi|105338 : TGAAA-AT---ATGTCAAGCG----GTTTCAGAGAG-GAAGTCGTTTGAAGC-AAAAC-TGA-AC-
gi|105339 : TGAAA-AT---CTGACAAGCA----GTTCAAGAGAA-GAAGTTGTTTGAATC-AAAAG-TAA-AT-GATGGAC
gi|105340 : TGAAA-ATATGTGA---AATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-AAC
gi|105341 : AAA-AT---TGGC--A-----------CAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105342 : tgaagatgtatcAAA-AC---TGGCCTGGTG----GTTTTAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105343 : tgaagttctatcTAAAA-AT---CTGTCAAGTG----GTTTCA---GA-GAAGTCATTTGAAAC-AATTG-TTA-ACAGACAGAC
gi|105344 : TGAAA-AT---CTGTC----A----GTTTCAGAT----AAGTCGTTTGAAGC-AAAAG-TTA-CT-GATGGAC
gi|105345 : TGAAA-AT---CAGTCAAGTG----ATTTT-GACAA-GAAGTCGTTAGAAAC-AAAAG-TTA-AC-GACGGA
gi|105346 : TAAAA-AT---TTGTCAAGTG----GTTTCAGAAAA-GAAGTCATTTGAGGC-AATTG-TTA-ACTGACGAAC
gi|105347 : AGTG----GTTTCAGAAGAGGAAATCATTTGAAGC-AAAGG-TTA-AT-GAC
gi|105348 : tgaaactctgtgaTAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105349 : TGAAA-AT---CTGTCAAGCA----GTTTCA---GA-GAAGTCATTTAAAGC-AAAAG-TTG-AA-GATGGA
gi|105350 : TAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAATTGTTAGAAGCTAAAAG-TTA-AT-GACAGA
gi|105351 : TGAAA-AT-------CC--------GTTTCAGA--A-GAAGTCATTTGAAGC-AAAGG-TTA-AT-GACAGAC
gi|105358 : GAAA-AT---CTGTCAAGTG----GTTTCAG-GGA-TAA--TATTCGAAGC-AAAAG-TTA-CC-GACGGA
gi|105359 : AAA-AT---CTGTCAAGTG----GTTTCAGAAAA-GAAGTAGTTTGAAGC-AAAAG-TTA-AC-GACAGA
gi|105360 : AAA-AT---TGGCCCAGTT----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105361 : AGCG----GTTTCAGAG----AAGTCGTTTGAAGC-AAAAG-TTA-AC-GACGGAC
gi|105362 : aaaatctttcaAAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105363 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTTAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105365 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105366 : AAA-AT---TGGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105367 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105368 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105369 : AAA-AT---TGGCCAAATG----GTTTCGGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105370 : AAA-AT---TGGCCCATTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCAAAAAG-TTA-AC-GACAGAC
gi|105371 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105372 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105373 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105374 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105375 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105376 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105377 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105379 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTATTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105380 : AAA-AT---TGGCCCAGTA----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105381 : AAA-AT---TGGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAACTAAAAG-TTA-AC-GACAAAC
gi|105382 : AATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-GAC
gi|105383 : aaaatatgtgaAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACTGAC
gi|105384 : AAA-AT---TAGCCCAATG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAGG-TTT-AC-GACAGAC
gi|105385 : AAATAT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105386 : aAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGGTAAAAG-TTA-AC-GACGGAC
gi|105387 : AAA-AT---TGGCCTAGTG----GTTTCAGAGGA-GAAGTTGTTGGAA-TTAAAAG-TTA-AC-GACGGAC
gi|105388 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105389 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACGGAC
gi|105390 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105391 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AA-TACGGAC
gi|105392 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGACgacagac
gi|105393 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAA-TTA-AC-GACGGAC
gi|105394 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105395 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105396 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACAGAC
gi|105397 : AAA-AT---TTGCCCAGTG----GTTTTAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GTCGGAC
gi|105398 : AAA-AT---TGGCCAGGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAATA-TTA-AC-GACAGAC
gi|105399 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GAAGGAC
gi|105400 : AAA-AT---TGGCCAAGTG----GTTTCAGAGGA-GAAGTTATTAGAAGCTAAATG-TTA-AT-GACAGAC
gi|105401 : AAA-AT----GGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105402 : AAA-AT---TGGCAAAGTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGAC
gi|105403 : AAA-AT---TGGCCAAGTG----GTTTCAGAGAA-GAAATTGTTAGAAGCTAAAAG-TT--AC-AGTGGAC
gi|105404 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGACgacaggc
gi|105405 : AAA-AT---TGGCCCAGTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105406 : AAA-GT---TGGCCCAATG----GTTTCAGAGGA-GAAGCTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105407 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTGAAAG-TTA-AC-GACGGAC
gi|105408 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AATGGAC
gi|105409 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGA
gi|105410 : AAA-AT---TTGCCAAGTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TCA-AC-GAC
gi|105412 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GATGGAC
gi|105413 : AAA-AT---TGGCCAAGTG----GTTTCAGAGGA-GATGTTGTTAGAAGCTAAAAG-CTA-AT-GACGGAC
gi|105414 : AAA-AT---TGGCACAGTG----GTTTCAAAGGA-AAAGTTGTTAGAAGC-AAAAG-TTA-AT-GACGGAC
gi|105440 : AA-AT---CTGTCAAGCG----GTTTTAGAGAA-GGGGTCGCTTGAAAC-AAAAG-TTA-AC-GACAGAC
gi|105441 : AA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105442 : AA-AT---CTGTCAAGTG----GTTTAAGATAA-GAAATCATTTGAAGC-AAAAG-TTA-GA-GAC
gi|105443 : AA-AT---TTGCCCAGTGCATGGTTTCAGAGCA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105446 : G----GTTTTAGAGAA-TTAGTCCTTTGAAGC-AAAAA-TTA-AC-GACAGAC
gi|105449 : aatcggttgtcaatc----GCTTCAGAGAA-GAAGTCTTTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105450 : tgtaaaaat----GTTTCAGAGAA-AAAGTTATTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105451 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105452 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105453 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-TACAGAC
gi|105454 : ----GTTTTAAAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
blockSeqs : A C T T
blockSeqs : A C T G
blockSeqs : A G T A
blockSeqs : A T T T
blockSeqs : G C T .
blockSeqs : A C T .
blockSeqs : A C T .
blockSeqs : A C T .
blockSeqs : A C T .
blockSeqs : A C T .
blockSeqs : A T T .
blockSeqs : G C T .
blockSeqs : A T T .
blockSeqs : G C T .
blockSeqs : A C T .
blockSeqs : C T A .
blockSeqs : C T T .
blockSeqs : A C T .
blockSeqs : A T T .
blockSeqs : A C T .
blockSeqs : T T T .
blockSeqs : A C T .
blockSeqs : A T T .
blockSeqs : A T T .
blockSeqs : C C T .
blockSeqs : A C T .
blockSeqs : C C T .
blockSeqs : C C T .
blockSeqs : A C T .
blockSeqs : A T T .
blockSeqs : C C T .
blockSeqs : C T T .
blockSeqs : C C T .
blockSeqs : C T T .
blockSeqs : C A T .
blockSeqs : C T T .
blockSeqs : C C T .
blockSeqs : A T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : T T T .
blockSeqs : C T T .
blockSeqs : C C T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T T .
blockSeqs : C T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : C T . .
blockSeqs : C T . .
blockSeqs : C T . .
blockSeqs : C T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : A T . .
blockSeqs : C T . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : C . .
blockSeqs : T . .
blockSeqs : C . .
blockSeqs : T . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqCons :
originalCons : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
finalCons : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|105331 ): TGAAAATATGTGAAATTGTTTTTGAGAAAAAATCATCTGAAGCAAAAGTTAACGAC
Alignments
lowQualScore : 0 000 1 0000 0 1 0 9 0 0 1
lowQualScore : . ... . .... . . . . . . .
lowQualScore : 5 888 2 9999 4 7 6 6 4 4 6
consensus : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
Reference ( family-232 ) : TGAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTCGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105317 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCGTTTGAGGC-AAAAG-TTA-AC-GACGAAC
gi|105318 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCATTTGAAGC-AGAAG-TTA-AT-TACGGAC
gi|105319 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-AAAGTCATTTGAAGC-AAAAG-TTA-AT-GATGGA
gi|105320 : TGAAA-AC---CTGTCAAGTG----GTATCAGAGAA-GAAGTGGTTTGAAGC-AAAAG-TTA-AC-AAC
gi|105321 : TGAAA-AT---TTGTCAAACT----GTTTCAGAGTA-GTAGTTATTTGAAGC-AAAAG-TAT-AC-GACGGAC
gi|105322 : TGGAA-AT---CTGTCGAGCG----GTTTCAGAGAA-GAAATCGTCTAAAGC-AAAAG-TTA-AC-AACGGAC
gi|105323 : TGAAA-AT---CTGTCATGTG----GTTTCAGAGAA-GAAGACGTTTGAAGC-AATTG-TTA-ACTGACAGAC
gi|105324 : TGAAA-AT---CTGTCAAGTT----TTTTCAGAGAA-TTAGTCGTTTGAAGC-AAAAGTTTA-AT-GGTGGAC
gi|105325 : TGAAA-AT---CTGTCAAGTG----GTTTCAGAGAA-GAAGTCGTTTGAAAC-AATTG-TTAGAA-GACAGAagac
gi|105326 : TGAAA-AT---GTGTGAAATT----GTTTTAGAGAA-AAAATCGTCTGAAGC-AAAAG-TTT-AC-GAC
gi|105327 : TAAAA-AT---CTGTCAAATG----GTTTCA---GA-GAAGTCGTTTGAAGC-AAAAT-TTA-AG-GA-GGAC
gi|105328 : TGAAA-GT---CTGTCAAGCC----ATTTCAGAG----AAGTTGTTTGGAGC-AAAAG-TTA-ACGGACGGAggcagac
gi|105329 : TGAAA-AT---CTGTAGAGCA----GTTTCAGAGAT-GAAGTCGTTTGAAGC-AGAAG-TTA-AT-GAC
gi|105330 : TGAAA-CT---CTGCCACGTG----GTTTTAGAGAA-AAAGATGTTTGAGGC-AAAAG-TTA-AC-GATGGAC
gi|105332 : TGAAA-CT---TTTTCGAGTG----GTTTCAGAGAA-GATATCATTTGAAGC-AAAAG-TTA-AC-AACAGAC
gi|105333 : TGAAA-AT---CTATTAAGTG----GTTTGGGAAAA-GAAGTCGTTTCAAGC-AAAAG-TTT-AC-GACGGAC
gi|105334 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105335 : tgaaaatatatcTAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105336 : AATG----GTTTCAGAG----AAGTCGTTTGAAGA-AAAAG-TTA-AC-AACGGAC
gi|105337 : tgaaaaggtgttaTAAAA-AT---TGACCAAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-TACAGAC
gi|105338 : TGAAA-AT---ATGTCAAGCG----GTTTCAGAGAG-GAAGTCGTTTGAAGC-AAAAC-TGA-AC-
gi|105339 : TGAAA-AT---CTGACAAGCA----GTTCAAGAGAA-GAAGTTGTTTGAATC-AAAAG-TAA-AT-GATGGAC
gi|105340 : TGAAA-ATATGTGA---AATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-AAC
gi|105341 : AAA-AT---TGGC--A-----------CAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105342 : tgaagatgtatcAAA-AC---TGGCCTGGTG----GTTTTAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105343 : tgaagttctatcTAAAA-AT---CTGTCAAGTG----GTTTCA---GA-GAAGTCATTTGAAAC-AATTG-TTA-ACAGACAGAC
gi|105344 : TGAAA-AT---CTGTC----A----GTTTCAGAT----AAGTCGTTTGAAGC-AAAAG-TTA-CT-GATGGAC
gi|105345 : TGAAA-AT---CAGTCAAGTG----ATTTT-GACAA-GAAGTCGTTAGAAAC-AAAAG-TTA-AC-GACGGA
gi|105346 : TAAAA-AT---TTGTCAAGTG----GTTTCAGAAAA-GAAGTCATTTGAGGC-AATTG-TTA-ACTGACGAAC
gi|105347 : AGTG----GTTTCAGAAGAGGAAATCATTTGAAGC-AAAGG-TTA-AT-GAC
gi|105348 : tgaaactctgtgaTAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105349 : TGAAA-AT---CTGTCAAGCA----GTTTCA---GA-GAAGTCATTTAAAGC-AAAAG-TTG-AA-GATGGA
gi|105350 : TAAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAATTGTTAGAAGCTAAAAG-TTA-AT-GACAGA
gi|105351 : TGAAA-AT-------CC--------GTTTCAGA--A-GAAGTCATTTGAAGC-AAAGG-TTA-AT-GACAGAC
gi|105358 : GAAA-AT---CTGTCAAGTG----GTTTCAG-GGA-TAA--TATTCGAAGC-AAAAG-TTA-CC-GACGGA
gi|105359 : AAA-AT---CTGTCAAGTG----GTTTCAGAAAA-GAAGTAGTTTGAAGC-AAAAG-TTA-AC-GACAGA
gi|105360 : AAA-AT---TGGCCCAGTT----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105361 : AGCG----GTTTCAGAG----AAGTCGTTTGAAGC-AAAAG-TTA-AC-GACGGAC
gi|105362 : aaaatctttcaAAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105363 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTTAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105365 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105366 : AAA-AT---TGGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105367 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105368 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105369 : AAA-AT---TGGCCAAATG----GTTTCGGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGA
gi|105370 : AAA-AT---TGGCCCATTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCAAAAAG-TTA-AC-GACAGAC
gi|105371 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105372 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105373 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105374 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105375 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105376 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105377 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105379 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTATTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105380 : AAA-AT---TGGCCCAGTA----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105381 : AAA-AT---TGGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAACTAAAAG-TTA-AC-GACAAAC
gi|105382 : AATG----GTTTTAGAGAA-AAAATCATCTGAAGC-AAAAG-TTA-AC-GAC
gi|105383 : aaaatatgtgaAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACTGAC
gi|105384 : AAA-AT---TAGCCCAATG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAGG-TTT-AC-GACAGAC
gi|105385 : AAATAT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105386 : aAAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGGTAAAAG-TTA-AC-GACGGAC
gi|105387 : AAA-AT---TGGCCTAGTG----GTTTCAGAGGA-GAAGTTGTTGGAA-TTAAAAG-TTA-AC-GACGGAC
gi|105388 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105389 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACGGAC
gi|105390 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGAC
gi|105391 : AAA-AT---TGGCCCAGTG----GTTTCAGAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AA-TACGGAC
gi|105392 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACGGACgacagac
gi|105393 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAA-TTA-AC-GACGGAC
gi|105394 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105395 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAAAAGCTAAAAG-TTA-AC-GACAGAC
gi|105396 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACAGAC
gi|105397 : AAA-AT---TTGCCCAGTG----GTTTTAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GTCGGAC
gi|105398 : AAA-AT---TGGCCAGGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAATA-TTA-AC-GACAGAC
gi|105399 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GAAGGAC
gi|105400 : AAA-AT---TGGCCAAGTG----GTTTCAGAGGA-GAAGTTATTAGAAGCTAAATG-TTA-AT-GACAGAC
gi|105401 : AAA-AT----GGTCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105402 : AAA-AT---TGGCAAAGTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGAC
gi|105403 : AAA-AT---TGGCCAAGTG----GTTTCAGAGAA-GAAATTGTTAGAAGCTAAAAG-TT--AC-AGTGGAC
gi|105404 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAATCTAAAAG-TTA-AC-GACGGACgacaggc
gi|105405 : AAA-AT---TGGCCCAGTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105406 : AAA-GT---TGGCCCAATG----GTTTCAGAGGA-GAAGCTGTTAGAAGCTAAAAG-TTA-AC-AACGGAC
gi|105407 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTGAAAG-TTA-AC-GACGGAC
gi|105408 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AATGGAC
gi|105409 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-AACGGA
gi|105410 : AAA-AT---TTGCCAAGTG----GTTTCAGAG----AAGTTGTTAGAAGCTAAAAG-TCA-AC-GAC
gi|105412 : AAA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAAAAGCTAAAAG-TTA-AC-GATGGAC
gi|105413 : AAA-AT---TGGCCAAGTG----GTTTCAGAGGA-GATGTTGTTAGAAGCTAAAAG-CTA-AT-GACGGAC
gi|105414 : AAA-AT---TGGCACAGTG----GTTTCAAAGGA-AAAGTTGTTAGAAGC-AAAAG-TTA-AT-GACGGAC
gi|105440 : AA-AT---CTGTCAAGCG----GTTTTAGAGAA-GGGGTCGCTTGAAAC-AAAAG-TTA-AC-GACAGAC
gi|105441 : AA-AT---TGGCCCAGTG----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105442 : AA-AT---CTGTCAAGTG----GTTTAAGATAA-GAAATCATTTGAAGC-AAAAG-TTA-GA-GAC
gi|105443 : AA-AT---TTGCCCAGTGCATGGTTTCAGAGCA-AAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
gi|105446 : G----GTTTTAGAGAA-TTAGTCCTTTGAAGC-AAAAA-TTA-AC-GACAGAC
gi|105449 : aatcggttgtcaatc----GCTTCAGAGAA-GAAGTCTTTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105450 : tgtaaaaat----GTTTCAGAGAA-AAAGTTATTTGAAGC-AAAAG-TTA-AT-GACAGAC
gi|105451 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACAGAC
gi|105452 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AT-GACAGAC
gi|105453 : ----GTTTCAGAGGA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-TACAGAC
gi|105454 : ----GTTTTAAAGAA-GAAGTTGTTAGAAGCTAAAAG-TTA-AC-GACGGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|105331 ): TGAAAATATGTGAAATTGTTTTTGAGAAAAAATCATCTGAAGCAAAAGTTAACGAC