lowQualScore : 11111 1111111 8888888888888 111111111111 11 1111 1111111 11111111 111111111111 11111111 1111111 11
lowQualScore : 3 66 11111 3 7 3 9 2 0 9999 1 4 3333333 4 777 8888888888888 888888888888 44 88 44 0000 4444444 00000000 3 888888 3 3 777777777777 44 999 3 3 44 5 3 88888 1 2 2 3 33 44 3 3 2 3 333 00000000 3 22 1 1 3 55555555555 7777 0000000 22222 0 11 0000 0 0 22 4 0 5
lowQualScore : . .. ..... . . . . . . .... . . ....... . ... ............. ............ .. .. .. .... ....... ........ . ...... . . ............ .. ... . . .. . . ..... . . . . .. .. . . . . ... ........ . .. . . . ........... .... ....... ..... . .. .... . . .. . . .
lowQualScore : 0 11 11111 7 0 7 8 6 9 4444 0 4 3333333 4 000 0000000000000 666666666666 66 88 00 4444 2222222 44444444 1 888888 3 3 111111111111 66 222 3 8 66 2 3 33333 7 9 7 2 22 33 3 1 8 1 999 00000000 5 00 1 1 4 33333333333 2222 1111111 00000 4 00 9999 4 4 33 1 4 0
consensus : ATTTTAAAACATATCGCGTGTTTCAATAGCGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACNAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTAT----TAGC-TTA-----CT-AAA---ATACTTT-AA-GGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-AC------------CAT--A---GCATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACCCGACGGGAC-TGGACAAAATAG
Reference ( gi|111135 ) : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAATTGCAGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTAT----TAAC-TAA-----CT-AAA---ATAC-------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-AC------------CAT--A---GCATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGG-ATCGAACTCGACGGGAC-TGAACAAAATAG
gi|111137 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATTACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATTAAAGAAATATAAAGCTTCAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCATAATACATCAGCTATTCACATTTAT----AAGC-TTA-----CT-AAA---ATAC-------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-AC------------CAT--A---GCATATGT-TACGGC--TAAT-TTTGTTCCTGT-----GTTGATAAAAAGTGCATAAC-TCT-TGTAAGTGGCT--GAATG-AA-A-TCGGA-ATAATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGG-ATCGAACCCGACGGGAC-TGAACAAAATAG
gi|111136 : ATTTTAAAACATAGCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGCATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTGAT----TAGC-TTA-----CTAAAA---ATAC-------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTG--AAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-AC------------CAT--A---GCATATGC-TACGAT--TATT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--TA----GT-AG-AACTTCGATGG-ATCGAACCCGACGGGAC-TGAACAAAATAG
gi|111138 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTCTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTAT----TAGC-TTA-----CT-AAA---ATAC-------------GCTGCAATTTTCACTTGAA------------ACTAT--TTCTG--AAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAATT-ACATT-AC------------CAT--A---GCATATGT-TACGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TAGGA-ATGATAG---AA--------TTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCAATGG-ATCGAATCCGACGGGAC-TGAACAAAATAG
gi|111139 : ATTTTAAAACATATCGCGTGTTTCAATAGCATACTTACATGACATGATCTGT--AACAAATAGTTTGTGAATGCTTTAGT-----GTTTACTTTTTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGTGTGATATATCAGCTATTCACATCTAT----TTAC-TTA-----CT-AAA---ATACTTTAAAGGGACACGCTGCAAGTTTCACTTAAA------------ACTAT--TTCTG-AAAAG--CA----TA-------TATACTTAT--------TATG-TA------AAGTA-ACATT-AC------------CAC--A---GCGTATGA-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111140 : ATTTTAAAACATATCGCGTGTTCCATTAGCATACTAACCTGACGTGATCTGT--AAGAAATATTTTGTGAATGTTTGAGT-----GTTTACTTTATTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTTACCAAAGCAAATAGATTTGTTAAACTGCTGCGTAATAGATCAGCTATTTACATTTAT----AAAC-TAA-----TC-AAA---ATACTTTGAAGGGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG--AAAA-ATA----TA-------TGTATTTAT--------TATG-TA------AAGaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcctgagttgtatcggaatgagagaacttaatccaagtatataaagatgaatacagtagaatttcgatcgtcgaacccgacgggcctaaacaaagtag
gi|111141 : ATTTTAAAATATATCGCGTGTTTCAATAGCGAACTAACATGACATAATCTGT--AAGAATTTTTTTCTGAATATTTTAGT-----GTTAACTTTATTAAACATGAAATACCAGAAGGAAGATAAAGCTTTAGATAATTGCGGTATCACTAATCAAAGCAAAGACATTTGTAAAACTGCTGCGCAATAAATCAGCTATTCACATTTAT----TAGC-TTA-----CT-AAA---GTACTTTAAAGGGACACGCAGCAATTTTCACT-------------------AT--TTCTG-AAAAG--TA----TA-------TATACTTAT--------TAT
gi|111142 : ATTTCAAATCATATCGCGTGTTTCAATAGCGTGCTAACACGATAGTATATGTTTAAGAAATATTTTGTGAATGTTTTAGT-----GTTTGCTTT----------AGATAAT---TGCAGTACA---CT----AT-ATTAC----TTACA----AAAACAAATATATTTGTGAAACTGCTGCGTAATATATCAGCCATTCACATTTATAGGCCAACTTAAGTACTTT-AAAGGGACAC-------------ACTGCAATTTTCATTTTAA------------AGTAT--TTCTG-AGAAGCATAT---TAATTAAATTATGCTCAT--------TATG-TAAATATGAAGAT-ATATC-ACAACAGCAAGGGTCAT--A---G-ATATGCGTAT-AC--TAATGTTTGTTTCTGT-----GTTGGAAAAATGTGCATACG-TGT-TGTAAAT--CTAAAAATA-AACA-TAATATATGACAG---AT--------CTT
gi|111143 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACT
gi|111144 : TTTTAAAATATATCGCGTGTTTCAATAGCGTACAAACATGACATGAGCTGT--AATAAATAGTTTGTGAATATTTTAGTTAAACGTTTTCTTTACTAAACATGAAACACTAGAAGGAATTAAAAGCGTTAGATAATTGCGGTATAACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGCATAATATATCAGCTATTCACATTTAT----TAGC-TTA-----CT-AAA---ATACTTTAAAAGGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAAAG--CA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACGTT-AC------------AAT--A---GTATATGT-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111145 : TAAAGCACATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAACTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTAT----TAGC-TTA-----CT-AAA---ATAC-------------ACTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-AC------------CAT--A---GCATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGG-ATGGAACCCGACGGGAC-TGAACAAAATAGaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgtcggaatgatagaacttattccaagtatataaagatgaatacagtagaacttcgatggatcgaacccgacgggactgaaaaaaatag
gi|111146 : A---ACAC-------------ACAGCAATTTTTA--TAAATTTTCTTTTTTTACTATATTTCTG-TAAAATACA----TAA------TATATTTG----------ATG-CA------AATTTGAAATT-AA------------TAT--ACCGGCATATGG--AGAACCTTAAT-TTTGTTTTTAT-----TTTGGAAG---GGGAATAAC-TCC-TGTAAATGGAT--GAA
gi|111148 : tatcttaaaggATTTACACCTAAC------------GTTAC--TTCTG-AAAAG--TA----TA-------TATATCTATATGATGCACATA-TG------AAACT-AGAAT-AT------------CTC--A---GTATATGT-----GC--AGAG-TTTGTTTCTAT-----TTTGAAAAAGGG-GCATAAC-TCT-TGTAAAT
gi|111149 : AT--TTCCG-AAAGA-ACAATAATG-------TAAACAT-T--------TGTGCTA------AATTT-ACGTTTAT------------TGTTTAC--GAATA-GT-TGCGTC--TGGT-TTTCTTAATGTCAGAAGTTGATAAGAA-TG--TAAT-TGTATATAAAAGG-----AAAG-AA-A-CTGTA-A-GCTGG---ACTTTGGTTTCTTATTTTAA-A--TAT-T-C-A-----------GA-C--ATAA-----AA----T-A--CA----GT-AG-AACTTCGATGT-CTCGGACCAGACGGAAC-TGGACAAAATAG
gi|111151 : TTAT--------TATG-TA------AAGTT-ACATT-AC------------CAT--A---GCATATGT-TAAGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAT-TCT-TGTAAATGATT--GAA
gi|111150 : AT--------TATG-TA------AAGTT-ATATT-AC------------CGT--A---GCATATGT-TAAGAC--TGTT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-ACT-TGTAAATGGTT--GAAaaacattatatttggcagatcttcaacagcaagtgtaaaacatataataatttcctgagttgtatcggaatgatagaacttattctaagtatataaagatgaatacagtacaacttcgatggatcgaaccaaacgggactgaacaaaatag
gi|111153 : aacaacaacataAAACGCACATATA-TTT-TATAAATTGT----AATGCAG-A-T---A-ATAA-AC---AA--------CACATGCCAA----TAT-A-T-A------------------T-------A-----T-T--CA----GT-AT-AACTTCGATGG-CTCGAACCCGAGGGGAC-TGGACAAAATAGaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcctgagttgtatcggaatgatagaacttatttaaagtatataaagatgaatactgtagaacttcgatggatcgaacccgtcaggactgaacaaaatag
gi|111151 : AAGTGTAAAACATAT-AATAATTTCCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTCTAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AC-AACTTCGATGG-ATCGAACCAAACGGGAC-TGAACAAAATAG
gi|111154 : ttattatgtaaagttacattaccatagcatatgttaagactatttttgttcctgtgttgaaaaaagtgcataattcttgtaaatgattgaaaaacattatatttggcagatcttcaacagcCT-TGAAAAGGGGT--GAA----A-A-T---G-ATGTTAA---AAAG------CATAT---AA-A--AAA-A-A-A-----------AA-G--AT-------A-----T-A--CA----GT-AG-AACTTCAATCG-CTCGAACTCGACGGGAC-TGGACAAAATAG
gi|111139 : CT--GAGTT-GT-A-TCGGA-ATGAGAG---AA--------CTTAATCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AATTTCGATCG--TCGAACCCGACGGGCC-TAAACAAAGTAG
gi|111150 : attttaaaacatatcgcgtgtttcaatagcatacttacatgacatgatctgtaacaaatagtttgtgaatgctttagtgtttacttttttaaacatgaaacactagaaggaatataaagctttagataattgcggtattactaatcaaagcaaaaagatttgtaaaactgctgtgtgatatatcagctattcacatctatttacttactaaaatactttaaagggacacgctgcaagtttcacttaaaactatttctgaaaagcatatatacttattatgtaaagtaacattaccacagcgtatgataagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTTAAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CT----GT-AG-AACTTCGATGG-ATCGAACCCGTCAGGAC-TGAACAAAATAG
gi|111155 : aacaacaacataattatgtaaagttatattaccgtagcatatgttaagactgtttttgttcctgtgttgaaaaaaagtgcataacacttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcT--GAATA-AA-ACTC----ATCATAA---A----------TTGTTAAAACA--CAT-A-TTA-----------AA-G--A-GA-----AGAAAGT-A--CA----GT-AG-AACTTCAATAG-CTCGAACCTGATGGGAC-TGGACAAAACAG
gi|111144 : -TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGG-ATCGAACCCGACGGGAC-TGAAAAAAATAG
gi|111158 : ttttaaaatatatcgcgtgtttcaatagcgtacaaacatgacatgagctgtaataaatagtttgtgaatattttagttaaacgttttctttactaaacatgaaacactagaaggaattaaaagcgttagataattgcggtataactaatcaaagcaaaaagatttgtaaaactgctgcataatatatcagctattcacatttattagcttactaaaatactttaaaaggacacgctgcaattttcacttaaaactatttctgaaaagcatatatacttattatgtaaagttacgttacaatagtatatgttaagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgTAATGG---AA--------CATATT--------TAT-A-TTA-----------AA-C--AT-------A-----T-G--CA----GT-AG-AACTTTGATGA-CTTGAACCTGACAGGAC-TGGACAAAACAG
gi|111159 : ATCG---AA--------CACATTCCAA-G--TAT-A-TCATGATTTAGAACAA-A--ATGT-----A-----T-A--CA----GA-AG-ATCTTTGATGA-CTCGAACCCGACAGGAC-TGGACAAAATAG
gi|111160 : ATAGCGTAA--------CTTGTGCAGA-GCCTGT-A-T-A-----------TA-T--GTAC-----A-----T-A--CA----GT-AA-AACTTCGATAG-CTCGAACCCGGCGGGAC-TGGACAAA
gi|111162 : AG---AG--------TTTATTTC------TCT-G-T-A-----------AG-G--AT---------------A--CA----GT-AG-AACTTCGACAA-CTCGAACCCGATGGGAC-TGGACAAAATAG
gi|111164 : ---AA--------CTTATTTTGG-G--CAT-T-T-T-----------CA-A--GCAA-----C-----T-A--CA----GT-AG-AACTTCGATAG-CTCGAACCCGACAGGAC-TGGACAAAATAG
gi|111165 : A--------TTTAT--CAA-A--TAG-A-C-A-----------TA-G--AC-------A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACGCGACGGGAC-TGGACAAAATAG
gi|111166 : A--------CTTTATCTAATG--TAT-AGT-A-----------AC-A--TTCA-----A-----T-AGACA----GT-AG-AACTTCGATGG-CTCGAACTCGACGGGAC-TGGGCATAATAG
gi|111169 : TTCCAA-A--GAT---T-A-----------AA-G---TAA-----G-----T-A--CA----GT-AG-AACCTTGATGG-TTCGAACTTGACAGAGC-TTGACAAAATA
gi|111170 : CAC-G--TGTGA-T-A-----------AA-ACTATGA-----AA----T-A--CA----GT-AG-AACTTCGATGG-CTCGGACCCGACGGGAC-TGGACAAAATA
gi|111172 : AA-G--TAT-A-T-A-----------TA-T--AT-------A-----T-A--CA----GT-AG-AACTTCTATGG-TTCAAACTTAACAGGAC-TGGACAAAATAG
gi|111174 : -G--TAT-A-T-A-----------AT-T--ATG------------T-A--CT----GT-AGTAACCTCGATGG-CTCGAACCCGACGAGAC-TTAACAAAATAG
gi|111177 : --TGT-A-T-A-----------AT-T--AT-------A-----T-A--CA----GT-AG-AACTTCGATAG-CTTGAACCTGACGGGAC-TGAACAAAATAG
gi|111178 : --TAT-A-C-A-----------AACA--ATG------------T-A--CA----GT-GG-AACTTCGATGG-CTTGAACCTGACGGGAC-TGGACAAAACAG
gi|111180 : --TAT-A-T-A-----------TA-T--ATAT-----A-----T-A--CA----GT-AG-ATTTTTGATCG-CTCGAACTCGACGGGAC-TGGACAAAATAG
gi|111181 : --TAT-A-T-A-----------AA-T--ATCATCCAGG-----T-A--CA----GA-AG-AACTTTGATGG-TTCGAACACGACGGGAC-TGGGCAAAATAG
gi|111182 : AT-A-T-A-----------CG-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCGTTGG-CTCGAACTCGACAGGAT-TGAACAAAATAG
gi|111185 : AC-A-T-A-----------AA-G--CT-------A-----T-A--CA----GT-AG-AACTTTGTTCG-CTCGAACTCGATGAGAC-TGGACAAAATAG
gi|111183 : AT-A-C-G-----------AA-T--ATGT-----G-----T-A--CA----GT-AG-AATTTTAATGG-CTCGAACCCGACGGGAC-TGGACAAA
gi|111184 : AT-A-C-A-----------AA-ACTATAT-----A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACCCGATGGGAC-TGGTCAA
gi|111188 : T-G-T-A-----------AA-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCTATAG-TTCGAACCCGACCGGAC-TGGGCAAAATAG
gi|111189 : T-A-T-A-----------TA-T--ACAA-----A-----T-A--AA----GT-AG-AACTTTGATAA-TTTGAACCCGACGGGAC-TGGGCAAAATAG
gi|111192 : -A-T-A-----------GA-A--ATCA-----------T-AT-CA----GT-AG-AACTTCAATGG-ATTGAACTCGACGGGAC-TCGACAAAATAG
gi|111191 : -A-T-A-----------AATG--TTGACAT--A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACCCGATGGGAA-TGGACAAACTAG
gi|111199 : -----------AA-A--ATGATTAT-A-----T-A--CA----GT-AG-AACTTTGATGG-CTCGAACTGGAGGGGAC-TGGACAAAATAG
gi|111202 : A-A--ATAA-----A-----TTA--AA----GT-AG-ACCTTCTATGG-ATCGAACATGACGGGAC-TGAACAAAATAG
gi|111201 : A-A--ATAA-----A-----T-A--CATACCGT-AG-AACTTCGATGG-CTCGAACCCGACAGAAC-TGGACAAAAT
gi|111203 : -G--AT-A-----A-----T-A--CA----GT-AG-AACTTCAATGG-CTCGAACCCAACGAGAC-TG---GAAATAG
gi|111204 : --ATCA-----A-----T-A--CA----GC-GG-AACTTCGATTG-CTCGAACACGACGGGGC-TGTACAAAATAG
gi|111209 : TAA-----A-----T-A--CA----GT-AG-AACTTCAATGG-CTCGAACCCGACAGGAC-TGGACAAAATAG
gi|111210 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAG-CTCGAACCCGACGGGAC-TGGACAAAA
gi|111211 : TAA-----A-----T-A--CA----GT-AG-GACTTGGATGG-TTCAAACCCGACGGGAC-TGTACAAACTAG
gi|111212 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAG-CTCGAACCTGGCGGGAC-TGGTCCAAATAG
gi|111213 : TAA-----A-----G-A--CA----GT-AG-AACTTCGATGG-CTCGAACCTGACATGAT-TAGACAAAATAG
gi|111214 : TGA-----A-----T-A--CA-----------ACTTCGGTGG-CTCGAACCCGACGGGAT-TGGACAAAACAG
gi|111208 : TGAT----A-----T-A--TA----GT-AG-AACTTTGATGG-CCCAAACCCGACAAAAC-TGGACAAAATAG
gi|111217 : A-----G-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACCCGACGGGAC-TGGACAAAATAG
gi|111219 : A-----A-----T-A--CA----GT-AG-AACTTCGCTCG-CTCGAACTCGACGGGAC-TGGACAAAATAG
gi|111220 : A-----A-----T-A--CA----GT-AG-AACTTCGATCG-CTCGAACTCGACGGGAC-TGGTCAAAATAG
gi|111224 : A-----A-----T-A--CA----GT-AG-AACTTTGATCG-CTCAAACTCAACGGGAC-TGGACAAAATAG
gi|111221 : A-----A-----T-A--CC----GT-AG-AACTTCGATGA-CTCGAACCCAACAGGAC-TGGACAAAATAG
gi|111225 : A-----A-----T-A--TA----GT-A--AACTTCGATGG-CTCGAACACGGCGGGAC-TGAACAAAATGG
gi|111222 : A-----A-----T-A--CA----GC-AG-AACTTCGATGG-CTCGAACCTGACAAGAC-TGGACACAATAG
gi|111223 : A-----G-----T-A--CA----GT-AG-AACTTCAATGG-CTCAAACCTGACGTGAC-TGGACAAAATAG
gi|111226 : A-----A-----C-A--CA----GT-AG-AACTTCGATGA-CTCTAACCCGACGGGAC-TTGACAAAACAG
gi|111227 : A-----A-----T-A--CA----GT-AG-AACTTCGATAG-ATTGAATCGGACGGGACATG-ACAAAACAG
gi|111232 : -----A-----T-A--CA----GT-AG-AACTTCGATGG-ATCGAACCTGACGGGAC-TGAACAAAAT
gi|111233 : -----A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACCCGACGGGAC-TGGACAAAATAG
gi|111234 : -----A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACTTGACGGGAC-TGGACAAAATAG
gi|111235 : -----A-----T-A--CA----GT-AG-ATCTTCAATAG-ATCGAACCCGACGGGAC-TGGACAAAATAG
gi|111241 : -----A-----T-A--CA----GT-AG-AACTTCGATAG-CTCGAACTCGACGGGAC-AGGACAAAATA
gi|111231 : -----A-----T-A--CA----GT-AA-AACTTCGATGG-CTCGAACCCGACGAGAC-TGGATAAAATAG
gi|111236 : -----A-----T-A--CA----GT-AG-AATTTCGATGA-TTCGAATCCGACGGGAC-TGGACAAAATAG
gi|111237 : -----A-----T-A--TA----GT-AG-AACTTCAATGG-CTCGAACCCGACGGGAC-TGCACAAAATA
gi|111238 : -----A-----T-G--CA----GT-AG-AACTCCGATGG-CTCGAACCCAACGGGAC-TGGATAAAATAG
gi|111247 : -----A-----T-A--TA----G--AG-AACTTCGATCG-CTCGAACTCGACGGGAC-TGGACAAAATAG
gi|111240 : -----A-----T-A--CA----GT-CG-AACTTTGATGG-CTCGAACCCGACGGGAC-TGGACAAAAAAG
gi|111242 : -----A-----T-A--CA----GT-AG-AACTTCGATGG-CTCGAATCCGACGGGAT-GGGACGAAATAG
gi|111243 : -----A-----T-A--CA----GT-AG-AACTTCGATGG-CTTGAATCTGACAGAAC-TGGACAAAATAG
gi|111244 : -----A-----T-A--CA----GT-AG-AACTTAGATGG-ATCGAACCCGAGGGGAC-TGGGAAAAGTAG
gi|111246 : -----A-----T-A--CA----GT-AG-AAGTTTGATGG-CTTGAACCCGATGGGAC-TGGACAAAACAG
gi|111249 : -----A-----T-A--CA----GT-AG-AACTTCAATCC-CTCGAACACGACGGGAT-TGGACAAAATAG
gi|111248 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCACAAAACT-GATGGGAC-TGGACAAAATAG
gi|111250 : -----A-----T-A--CA----GT-AG-AACTTTGATGG-CTCGAACCCGACGGGAC-
gi|111251 : -----A-----T-A--CA----GT-AG-AGCTTCGATGG-CTCGAACCCGACAGGGC-TGTAAAAACTAG
gi|111253 : -----A-----T-T--CA----GT-AG-AACTTCGATGG-CTCGAACCCGGAAGGAC-TGAACCAAAT
gi|111252 : -----A-----T-A--CA----GT-AG-AACCTCGATGG-CTCGAAACCTGTGGGAC-TGTACAAAATAG
gi|111254 : -----A-----T-A--CA----GTGAG-AACTTCGATGG-CTCGAACCCGAAAGAAC-TGGACAAATTAG
gi|111255 : -----A-----T-A--CA----GT-AG-CACTTCGATGG-TTTAAACCCGACGGGAC-TTGACAATATAG
gi|111268 : -----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACTCGACGGTAC-TGGACAAAAT
gi|111267 : -----T-A--CA----GT-AG-AACTTCAATCG-CTCGAACTCGACGGGAC-TGGACAAAATAG
gi|111269 : -----T-A--CA----GT-AG-AACTTCGATGG-CTCAAACTCTACGGAAC-TGAACAAAATAG
gi|111270 : -----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACACGACGGGAC-TGCACAACATAG
gi|111272 : -----T-A--CA----GT-AG-AACTCCGATGG-CTCGAACCTGATTGGAC-TGGACAAAATAG
gi|111274 : -----T-A--CA----GT-AG-AACTTCGATGG-CTCAAACAAGACTGGAC-TGGACAAAATAG
gi|111276 : -----T-A--CA----GT-AG-AACTTCAATGG-CTCGAACACGACGGGAC-TGGACGA
gi|111271 : -----T-A--CA----GT-AG-AACTTCGATGA-CTCGAACCCGTCGGGAC-TGTACCAAATA
gi|111273 : -----T-A--CA----GT-AG-AACTTTGATAG-CTCAAACCCGACGGGAC-TGGACAAGTTAG
gi|111277 : -----T-A--CA----GT-AG-AACTTCGATGG-CTCGAACCCTACGCGAC-TTGACAAATTAG
gi|111286 : -A--CA----GT-AG-AACTTTGATGG-CTCGAACACGGCAGGAC-TGGACAAAATA
gi|111287 : -A--CA----GT-AG-AACTTTGATGA-CTCTAACCCGATGGGAC-TGGACAAAAT
gi|111291 : --CA----GT-AG-AACTTCAATGG-CTCGAACCCTACGGGAC-TTTACAAAATAG
Alignments
lowQualScore : 11111 55555555555555 111111111111 1 1111111 11111111111 1111111
lowQualScore : 3 55 00000 2 1 11111111111111 777777777777 44 5 3 6 9999 3333333 99999999 2 888888 3 3 44 888 44444444444 3 1 44 2 3 77777 0 2 2 2 33 33 3 2 1 2 333 99999999 3 22 1 1 3 55555555555 6666 0000000 22222 0 00 0000 0 0
lowQualScore : . .. ..... . . .............. ............ .. . . . .... ....... ........ . ...... . . .. ... ........... . . .. . . ..... . . . . .. .. . . . . ... ........ . .. . . . ........... .... ....... ..... . .. .... . .
lowQualScore : 6 55 00000 3 0 77777777777777 111111111111 22 6 1 2 6666 1111111 77777777 9 222222 1 1 22 555 66666666666 1 0 22 1 1 77777 8 7 5 5 11 22 1 9 9 9 777 55555555 3 00 1 1 3 11111111111 8888 0000000 00000 4 66 9999 4 4
consensus : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTG--TAAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
Reference ( family-213 ) : ATTTTAAAACATATCGCGTGTTTCAATAGCGTACTAACATGACATGATCTG--TAAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACNAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111135 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTG--TAAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAATTGCAGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAACTAACTAAAATAC----------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACTCGACGGGACTGAACAAAATAG
gi|111136 : ATTTTAAAACATAGCGCGTGTTTCAATAGAGTACTAACATGACATGATCTG--TAAGAAATATTTTGTGCATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTGATTAGCTTACTAAAA--------------A-TACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGC-TACGAT--TATT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--TA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111137 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATTACATGATCTG--TAAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATTAAAGAAATATAAAGCTTCAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCATAATACATCAGCTATTCACATTTATAAGCTTACTAAAATAC----------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGGC--TAAT-TTTGTTCCTGT-----GTTGATAAAAAGTGCATAAC-TCT-TGTAAGTGGCT--GAATG-AA-A-TCGGA-ATAATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111138 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTG--TAAGAAATATTCTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAAT----------------ACGCTGCAATTTTCACTTGAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAATT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TAGGA-ATGATAG---AA--------TTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCAATGGATCGAATCCGACGGGACTGAACAAAATAG
gi|111139 : ATTTTAAAACATATCGCGTGTTTCAATAGCATACTTACATGACATGATCTG--TAACAAATAGTTTGTGAATGCTTTAGT-----GTTTACTTTTTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGTGTGATATATCAGCTATTCACATCTATTTACTTACTAAAATACTTT--AAAGGGA-CACGCTGCAAGTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTA-ACATT-ACCAC--A---GC-----------GTATGA-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111139 : CT--GAGTT-GT-A-TCGGA-ATGAGAG---AA--------CTTAATCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AATTTCGATCG-TCGAACCCGACGGGCCTAAACAAAGTAGaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcctgagttgtatcggaatgagagaacttaatccaagtatataaagatgaatacagtagaatttcgatcgtcgaacccgacgggcctaaacaaagtag
gi|111140 : attttaaaacatatcgcgtgtttcaatagcatacttacatgacatgatctgtaacaaatagtttgtgaatgctttagtgtttacttttttaaacatgaaacactagaaggaatataaagctttagataattgcggtattactaatcaaagcaaaaagatttgtaaaactgctgtgtgatatatcagctattcacatctatttacttactaaaatactttaaagggacacgctgcaagtttcacttaaaactatttctgaaaagcatatatacttattatgtaaagtaacattaccacagcgtatgataagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcATTTTAAAACATATCGCGTGTTCCATTAGCATACTAACCTGACGTGATCTG--TAAGAAATATTTTGTGAATGTTTGAGT-----GTTTACTTTATTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTTACCAAAGCAAATAGATTTGTTAAACTGCTGCGTAATAGATCAGCTATTTACATTTATAAACTAATCAAAATACTTTGAAG--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TGTATTTAT--------TATG-TA------AAG
gi|111141 : ATTTTAAAATATATCGCGTGTTTCAATAGCGAACTAACATGACATAATCTG--TAAGAATTTTTTTCTGAATATTTTAGT-----GTTAACTTTATTAAACATGAAATACCAGAAGGAAGATAAAGCTTTAGATAATTGCGGTATCACTAATCAAAGCAAAGACATTTGTAAAACTGCTGCGCAATAAATCAGCTATTCACATTTATTAGCTTACTAAAGTACTTT--AAAGGGA-CACGCAGCAATTTTC-------------------ACTAT--TTCTG-AAA-A-GTA----TA-------TATACTTAT--------TAT
gi|111142 : ATTTCAAATCATATCGCGTGTTTCAATAGCGTGCTAACACGATAGTATATGTTTAAGAAATATTTTGTGAATGTTTTAGT-----GTTTGCTTT----------AGATAATTGCAG---TACA---CT----AT-ATTAC----TTACAA----AAACAAATATATTTGTGAAACTGCTGCGTAATATATCAGCCATTCACATTTATAGGCCAACTTAAGTACTTT--AAAGGGA-CACACTGCAATTTTCATTTTAA------------AGTAT--TTCTGAGAA-GCATAT---TAATTAAATTATGCTCAT--------TATG-TAAATATGAAGAT-ATATC-ACAAC--A---GCAAGGGTCATAGATATGCGTAT-AC--TAATGTTTGTTTCTGT-----GTTGGAAAAATGTGCATACG-TGT-TGTAAAT--CTAAAAATA-AACA-TAATATATGACAG---AT--------CTT
gi|111143 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACT
gi|111144 : TTTTAAAATATATCGCGTGTTTCAATAGCGTACAAACATGACATGAGCTG--TAATAAATAGTTTGTGAATATTTTAGTTAAACGTTTTCTTTACTAAACATGAAACACTAGAAGGAATTAAAAGCGTTAGATAATTGCGGTATAACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGCATAATATATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACGTT-ACAAT--A---GT-----------ATATGT-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111144 : -TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAAAAAAATAGaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgtcggaatgatagaacttattccaagtatataaagatgaatacagtagaacttcgatggatcgaacccgacgggactgaaaaaaatag
gi|111145 : ttttaaaatatatcgcgtgtttcaatagcgtacaaacatgacatgagctgtaataaatagtttgtgaatattttagttaaacgttttctttactaaacatgaaacactagaaggaattaaaagcgttagataattgcggtataactaatcaaagcaaaaagatttgtaaaactgctgcataatatatcagctattcacatttattagcttactaaaatactttaaaaggacacgctgcaattttcacttaaaactatttctgaaaagcatatatacttattatgtaaagttacgttacaatagtatatgttaagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgTAAAGCACATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTG--TAAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAACTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATAC----------------ACTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATGGAACCCGACGGGACTGAACAAAATAG
gi|111146 : CTTA--AA--GGAACACACAGCAATTTTTA--TAAATTTTCTTTTTTTACTATATTTCTGTAAA-ATACA----TAA------TATATTTG----------ATG-CA------AATTTGAAATT-AATAT--ACCGGC-----------ATATGG--AGAACCTTAAT-TTTGTTTTTAT-----TTTGGAAG---GGGAATAAC-TCC-TGTAAATGGAT--GAA
gi|111148 : tatATTTACACCTAAC------------GTTAC--TTCTGAAAA-G--TA----TA-------TATATCTATATGATGCACATA-TG------AAACT-AGAAT-ATCTC--A---GT-----------ATATGT-GCAGAG--T-----TTGTTTCTAT-----TTTGAAAAAGGG-GCATAAC-TCT-TGTAAAT
gi|111149 : AT--TTCCGAAAG-A-ACAATAATG-------TAAACAT-T--------TGTGCTA------AATTT-ACGTTTATTGTTTAC--GA-----------ATA-GT-TGCGTC--TGGT-TTTCTTAATGTCAGAAGTTGATAAGAA-TG--TAAT-TGTATATAAAAGG-----AAAG-AA-A-CTGTA-A-GCTGG---ACTTTGGTTTCTTATTTTAA-A--TAT-T-C-A-----------GA-C--ATAA-----AA----T-A--CA----GT-AG-AACTTCGATGTCTCGGACCAGACGGAACTGGACAAAATAG
gi|111150 : AT--------TATG-TA------AAGTT-ATATT-ACCGT--A---GC-----------ATATGT-TAAGAC--TGTT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-ACT-TGTAAATGGTT--GAA
gi|111150 : aacaacaacataCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTTAAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CT----GT-AG-AACTTCGATGGATCGAACCCGTCAGGACTGAACAAAATAGaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcctgagttgtatcggaatgatagaacttatttaaagtatataaagatgaatactgtagaacttcgatggatcgaacccgtcaggactgaacaaaatag
gi|111151 : aacaacaacataattatgtaaagttatattaccgtagcatatgttaagactgtttttgttcctgtgttgaaaaaaagtgcataacacttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TAAGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAT-TCT-TGTAAATGATT--GAA
gi|111151 : AAGTGTAAAACATAT-AATAATTTCCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTCTAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AC-AACTTCGATGGATCGAACCAAACGGGACTGAACAAAATAGaaacattatatttggcagatcttcaacagcaagtgtaaaacatataataatttcctgagttgtatcggaatgatagaacttattctaagtatataaagatgaatacagtacaacttcgatggatcgaaccaaacgggactgaacaaaatag
gi|111153 : ttattatgtaaagttacattaccatagcatatgttaagactatttttgttcctgtgttgaaaaaagtgcataattcttgtaaatgattgaaaaacattatatttggcagatcttcaacagcAAACGCACATATA-TTT-TATAAATTGT----AATGCAG-A-T---A-ATAA-AC---AA--------CACATGCCAA----TAT-A-T-A------------------T-------A-----T-T--CA----GT-AT-AACTTCGATGGCTCGAACCCGAGGGGACTGGACAAAATAG
gi|111154 : CT-TGAAAAGGGGT--GAA----A-A-T---G-ATGTTAA---AAAG------CATAT---AA-A--AAA-A-A-A-----------AA-G--AT-------A-----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111155 : T--GAATA-AA-ACTC----ATCATAA---A----------TTGTTAAAACA--CAT-A-TTA-----------AA-G--A-GA-----AGAAAGT-A--CA----GT-AG-AACTTCAATAGCTCGAACCTGATGGGACTGGACAAAACAG
gi|111158 : TAATGG---AA--------CATATT--------TAT-A-TTA-----------AA-C--AT-------A-----T-G--CA----GT-AG-AACTTTGATGACTTGAACCTGACAGGACTGGACAAAACAG
gi|111159 : ATCG---AA--------CACATTCCAA-G--TAT-A-TCATGATTTAGAACAA-A--ATGT-----A-----T-A--CA----GA-AG-ATCTTTGATGACTCGAACCCGACAGGACTGGACAAAATAG
gi|111160 : ATAGCGTAA--------CTTGTGCAGA-GCCTGT-A-T-A-----------TA-T--GTAC-----A-----T-A--CA----GT-AA-AACTTCGATAGCTCGAACCCGGCGGGACTGGACAAA
gi|111162 : AG---AG--------TTTATTTC------TCT-G-T-A-----------AG-G--AT---------------A--CA----GT-AG-AACTTCGACAACTCGAACCCGATGGGACTGGACAAAATAG
gi|111164 : ---AA--------CTTATTTTGG-G--CAT-T-T-T-----------CA-A--GCAA-----C-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111165 : A--------TTTAT--CAA-A--TAG-A-C-A-----------TA-G--AC-------A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACGCGACGGGACTGGACAAAATAG
gi|111166 : A--------CTTTATCTAATG--TAT-AGT-A-----------AC-A--TTCA-----A-----T-AGACA----GT-AG-AACTTCGATGGCTCGAACTCGACGGGACTGGGCATAATAG
gi|111169 : TTCCAA-A--GAT---T-A-----------AA-G---TAA-----G-----T-A--CA----GT-AG-AACCTTGATGGTTCGAACTTGACAGAGCTTGACAAAATA
gi|111170 : CAC-G--TGTGA-T-A-----------AA-ACTATGA-----AA----T-A--CA----GT-AG-AACTTCGATGGCTCGGACCCGACGGGACTGGACAAAATA
gi|111172 : AA-G--TAT-A-T-A-----------TA-T--AT-------A-----T-A--CA----GT-AG-AACTTCTATGGTTCAAACTTAACAGGACTGGACAAAATAG
gi|111174 : -G--TAT-A-T-A-----------AT-T--ATG------------T-A--CT----GT-AGTAACCTCGATGGCTCGAACCCGACGAGACTTAACAAAATAG
gi|111177 : --TGT-A-T-A-----------AT-T--AT-------A-----T-A--CA----GT-AG-AACTTCGATAGCTTGAACCTGACGGGACTGAACAAAATAG
gi|111178 : --TAT-A-C-A-----------AACA--ATG------------T-A--CA----GT-GG-AACTTCGATGGCTTGAACCTGACGGGACTGGACAAAACAG
gi|111180 : --TAT-A-T-A-----------TA-T--ATAT-----A-----T-A--CA----GT-AG-ATTTTTGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111181 : --TAT-A-T-A-----------AA-T--ATCATCCAGG-----T-A--CA----GA-AG-AACTTTGATGGTTCGAACACGACGGGACTGGGCAAAATAG
gi|111182 : AT-A-T-A-----------CG-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCGTTGGCTCGAACTCGACAGGATTGAACAAAATAG
gi|111183 : AT-A-C-G-----------AA-T--ATGT-----G-----T-A--CA----GT-AG-AATTTTAATGGCTCGAACCCGACGGGACTGGACAAA
gi|111184 : AT-A-C-A-----------AA-ACTATAT-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGACTGGTCAA
gi|111185 : AC-A-T-A-----------AA-G--CT-------A-----T-A--CA----GT-AG-AACTTTGTTCGCTCGAACTCGATGAGACTGGACAAAATAG
gi|111188 : T-G-T-A-----------AA-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCTATAGTTCGAACCCGACCGGACTGGGCAAAATAG
gi|111189 : T-A-T-A-----------TA-T--ACAA-----A-----T-A--AA----GT-AG-AACTTTGATAATTTGAACCCGACGGGACTGGGCAAAATAG
gi|111191 : -A-T-A-----------AATG--TTGACAT--A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGAATGGACAAACTAG
gi|111192 : -A-T-A-----------GA-A--ATCAT----A-----T----CA----GT-AG-AACTTCAATGGATTGAACTCGACGGGACTCGACAAAATAG
gi|111199 : -----------AA-A--ATGATTAT-A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACTGGAGGGGACTGGACAAAATAG
gi|111201 : A-A--ATAA-----A-----T-A--CATACCGT-AG-AACTTCGATGGCTCGAACCCGACAGAACTGGACAAAAT
gi|111202 : A-A--ATAA-----A-----TTA--AA----GT-AG-ACCTTCTATGGATCGAACATGACGGGACTGAACAAAATAG
gi|111203 : -G--AT-A-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCAACGAGACTGG---AAATAG
gi|111204 : --ATCA-----A-----T-A--CA----GC-GG-AACTTCGATTGCTCGAACACGACGGGGCTGTACAAAATAG
gi|111208 : TGAT----A-----T-A--TA----GT-AG-AACTTTGATGGCCCAAACCCGACAAAACTGGACAAAATAG
gi|111209 : TAA-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111210 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACGGGACTGGACAAAA
gi|111211 : TAA-----A-----T-A--CA----GT-AG-GACTTGGATGGTTCAAACCCGACGGGACTGTACAAACTAG
gi|111212 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCTGGCGGGACTGGTCCAAATAG
gi|111213 : TAA-----A-----G-A--CA----GT-AG-AACTTCGATGGCTCGAACCTGACATGATTAGACAAAATAG
gi|111214 : TGA-----A-----T-A--CA-----------ACTTCGGTGGCTCGAACCCGACGGGATTGGACAAAACAG
gi|111217 : A-----G-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111219 : A-----A-----T-A--CA----GT-AG-AACTTCGCTCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111220 : A-----A-----T-A--CA----GT-AG-AACTTCGATCGCTCGAACTCGACGGGACTGGTCAAAATAG
gi|111221 : A-----A-----T-A--CC----GT-AG-AACTTCGATGACTCGAACCCAACAGGACTGGACAAAATAG
gi|111222 : A-----A-----T-A--CA----GC-AG-AACTTCGATGGCTCGAACCTGACAAGACTGGACACAATAG
gi|111223 : A-----G-----T-A--CA----GT-AG-AACTTCAATGGCTCAAACCTGACGTGACTGGACAAAATAG
gi|111224 : A-----A-----T-A--CA----GT-AG-AACTTTGATCGCTCAAACTCAACGGGACTGGACAAAATAG
gi|111225 : A-----A-----T-A--TA----GT-A--AACTTCGATGGCTCGAACACGGCGGGACTGAACAAAATGG
gi|111226 : A-----A-----C-A--CA----GT-AG-AACTTCGATGACTCTAACCCGACGGGACTTGACAAAACAG
gi|111227 : A-----A-----T-A--CA----GT-AG-AACTTCGATAGATTGAATCGGACGGGACATGACAAAACAG
gi|111231 : -----A-----T-A--CA----GT-AA-AACTTCGATGGCTCGAACCCGACGAGACTGGATAAAATAG
gi|111232 : -----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCTGACGGGACTGAACAAAAT
gi|111233 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111234 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTTGACGGGACTGGACAAAATAG
gi|111235 : -----A-----T-A--CA----GT-AG-ATCTTCAATAGATCGAACCCGACGGGACTGGACAAAATAG
gi|111236 : -----A-----T-A--CA----GT-AG-AATTTCGATGATTCGAATCCGACGGGACTGGACAAAATAG
gi|111237 : -----A-----T-A--TA----GT-AG-AACTTCAATGGCTCGAACCCGACGGGACTGCACAAAATA
gi|111238 : -----A-----T-G--CA----GT-AG-AACTCCGATGGCTCGAACCCAACGGGACTGGATAAAATAG
gi|111240 : -----A-----T-A--CA----GT-CG-AACTTTGATGGCTCGAACCCGACGGGACTGGACAAAAAAG
gi|111241 : -----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACTCGACGGGACAGGACAAAATA
gi|111242 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAATCCGACGGGATGGGACGAAATAG
gi|111243 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTTGAATCTGACAGAACTGGACAAAATAG
gi|111244 : -----A-----T-A--CA----GT-AG-AACTTAGATGGATCGAACCCGAGGGGACTGGGAAAAGTAG
gi|111246 : -----A-----T-A--CA----GT-AG-AAGTTTGATGGCTTGAACCCGATGGGACTGGACAAAACAG
gi|111247 : -----A-----T-A--TA----G--AG-AACTTCGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111248 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCACAAAACTGATGGGACTGGACAAAATAG
gi|111249 : -----A-----T-A--CA----GT-AG-AACTTCAATCCCTCGAACACGACGGGATTGGACAAAATAG
gi|111250 : -----A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACCCGACGGGAC
gi|111251 : -----A-----T-A--CA----GT-AG-AGCTTCGATGGCTCGAACCCGACAGGGCTGTAAAAACTAG
gi|111252 : -----A-----T-A--CA----GT-AG-AACCTCGATGGCTCGAAACCTGTGGGACTGTACAAAATAG
gi|111253 : -----A-----T-T--CA----GT-AG-AACTTCGATGGCTCGAACCCGGAAGGACTGAACCAAAT
gi|111254 : -----A-----T-A--CA----GTGAG-AACTTCGATGGCTCGAACCCGAAAGAACTGGACAAATTAG
gi|111255 : -----A-----T-A--CA----GT-AG-CACTTCGATGGTTTAAACCCGACGGGACTTGACAATATAG
gi|111267 : -----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111268 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTCGACGGTACTGGACAAAAT
gi|111269 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACTCTACGGAACTGAACAAAATAG
gi|111270 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACACGACGGGACTGCACAACATAG
gi|111271 : -----T-A--CA----GT-AG-AACTTCGATGACTCGAACCCGTCGGGACTGTACCAAATA
gi|111272 : -----T-A--CA----GT-AG-AACTCCGATGGCTCGAACCTGATTGGACTGGACAAAATAG
gi|111273 : -----T-A--CA----GT-AG-AACTTTGATAGCTCAAACCCGACGGGACTGGACAAGTTAG
gi|111274 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACAAGACTGGACTGGACAAAATAG
gi|111276 : -----T-A--CA----GT-AG-AACTTCAATGGCTCGAACACGACGGGACTGGACGA
gi|111277 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCTACGCGACTTGACAAATTAG
gi|111286 : -A--CA----GT-AG-AACTTTGATGGCTCGAACACGGCAGGACTGGACAAAATA
gi|111287 : -A--CA----GT-AG-AACTTTGATGACTCTAACCCGATGGGACTGGACAAAAT
gi|111291 : --CA----GT-AG-AACTTCAATGGCTCGAACCCTACGGGACTTTACAAAATAG
Alignments
lowQualScore : 11111 55555555555555 111111111111 1 1111111 11111111111 1111111
lowQualScore : 1 55 00000 2 1 11111111111111 777777777777 44 5 3 6 9999 3333333 99999999 2 888888 3 3 44 888 44444444444 3 1 44 2 3 77777 0 2 2 2 33 33 3 2 1 2 333 99999999 3 22 1 1 3 55555555555 6666 0000000 22222 0 00 0000 0 0
lowQualScore : . .. ..... . . .............. ............ .. . . . .... ....... ........ . ...... . . .. ... ........... . . .. . . ..... . . . . .. .. . . . . ... ........ . .. . . . ........... .... ....... ..... . .. .... . .
lowQualScore : 9 55 00000 3 4 77777777777777 111111111111 22 6 1 2 6666 1111111 77777777 9 222222 1 1 22 555 66666666666 1 0 22 1 1 77777 8 7 5 5 11 22 1 9 9 9 777 55555555 3 00 1 1 3 11111111111 8888 0000000 00000 4 66 9999 4 4
consensus : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
Reference ( family-213 ) : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111135 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAATTGCAGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAACTAACTAAAATAC----------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACTCGACGGGACTGAACAAAATAG
gi|111136 : ATTTTAAAACATAGCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGCATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTGATTAGCTTACTAAAA--------------A-TACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGC-TACGAT--TATT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--TA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111137 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATTACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATTAAAGAAATATAAAGCTTCAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCATAATACATCAGCTATTCACATTTATAAGCTTACTAAAATAC----------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGGC--TAAT-TTTGTTCCTGT-----GTTGATAAAAAGTGCATAAC-TCT-TGTAAGTGGCT--GAATG-AA-A-TCGGA-ATAATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111138 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTCTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAAT----------------ACGCTGCAATTTTCACTTGAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAATT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TAGGA-ATGATAG---AA--------TTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCAATGGATCGAATCCGACGGGACTGAACAAAATAG
gi|111139 : ATTTTAAAACATATCGCGTGTTTCAATAGCATACTTACATGACATGATCTGT--AACAAATAGTTTGTGAATGCTTTAGT-----GTTTACTTTTTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGTGTGATATATCAGCTATTCACATCTATTTACTTACTAAAATACTTT--AAAGGGA-CACGCTGCAAGTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTA-ACATT-ACCAC--A---GC-----------GTATGA-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111139 : CT--GAGTT-GT-A-TCGGA-ATGAGAG---AA--------CTTAATCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AATTTCGATCG-TCGAACCCGACGGGCCTAAACAAAGTAGaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcctgagttgtatcggaatgagagaacttaatccaagtatataaagatgaatacagtagaatttcgatcgtcgaacccgacgggcctaaacaaagtag
gi|111140 : attttaaaacatatcgcgtgtttcaatagcatacttacatgacatgatctgtaacaaatagtttgtgaatgctttagtgtttacttttttaaacatgaaacactagaaggaatataaagctttagataattgcggtattactaatcaaagcaaaaagatttgtaaaactgctgtgtgatatatcagctattcacatctatttacttactaaaatactttaaagggacacgctgcaagtttcacttaaaactatttctgaaaagcatatatacttattatgtaaagtaacattaccacagcgtatgataagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcATTTTAAAACATATCGCGTGTTCCATTAGCATACTAACCTGACGTGATCTGT--AAGAAATATTTTGTGAATGTTTGAGT-----GTTTACTTTATTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTTACCAAAGCAAATAGATTTGTTAAACTGCTGCGTAATAGATCAGCTATTTACATTTATAAACTAATCAAAATACTTTGAAG--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TGTATTTAT--------TATG-TA------AAG
gi|111141 : ATTTTAAAATATATCGCGTGTTTCAATAGCGAACTAACATGACATAATCTGT--AAGAATTTTTTTCTGAATATTTTAGT-----GTTAACTTTATTAAACATGAAATACCAGAAGGAAGATAAAGCTTTAGATAATTGCGGTATCACTAATCAAAGCAAAGACATTTGTAAAACTGCTGCGCAATAAATCAGCTATTCACATTTATTAGCTTACTAAAGTACTTT--AAAGGGA-CACGCAGCAATTTTC-------------------ACTAT--TTCTG-AAA-A-GTA----TA-------TATACTTAT--------TAT
gi|111142 : ATTTCAAATCATATCGCGTGTTTCAATAGCGTGCTAACACGATAGTATATGTTTAAGAAATATTTTGTGAATGTTTTAGT-----GTTTGCTTT----------AGATAATTGCAG---TACA---CT----AT-ATTAC----TTACA----AAAACAAATATATTTGTGAAACTGCTGCGTAATATATCAGCCATTCACATTTATAGGCCAACTTAAGTACTTT--AAAGGGA-CACACTGCAATTTTCATTTTAA------------AGTAT--TTCTGAGAA-GCATAT---TAATTAAATTATGCTCAT--------TATG-TAAATATGAAGAT-ATATC-ACAAC--A---GCAAGGGTCATAGATATGCGTAT-AC--TAATGTTTGTTTCTGT-----GTTGGAAAAATGTGCATACG-TGT-TGTAAAT--CTAAAAATA-AACA-TAATATATGACAG---AT--------CTT
gi|111143 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACT
gi|111144 : TTTTAAAATATATCGCGTGTTTCAATAGCGTACAAACATGACATGAGCTGT--AATAAATAGTTTGTGAATATTTTAGTTAAACGTTTTCTTTACTAAACATGAAACACTAGAAGGAATTAAAAGCGTTAGATAATTGCGGTATAACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGCATAATATATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACGTT-ACAAT--A---GT-----------ATATGT-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111144 : -TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAAAAAAATAGaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgtcggaatgatagaacttattccaagtatataaagatgaatacagtagaacttcgatggatcgaacccgacgggactgaaaaaaatag
gi|111145 : ttttaaaatatatcgcgtgtttcaatagcgtacaaacatgacatgagctgtaataaatagtttgtgaatattttagttaaacgttttctttactaaacatgaaacactagaaggaattaaaagcgttagataattgcggtataactaatcaaagcaaaaagatttgtaaaactgctgcataatatatcagctattcacatttattagcttactaaaatactttaaaaggacacgctgcaattttcacttaaaactatttctgaaaagcatatatacttattatgtaaagttacgttacaatagtatatgttaagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgTAAAGCACATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAACTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATAC----------------ACTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATGGAACCCGACGGGACTGAACAAAATAG
gi|111146 : CTTA--AA--GGAACACACAGCAATTTTTA--TAAATTTTCTTTTTTTACTATATTTCTGTAAA-ATACA----TAA------TATATTTG----------ATG-CA------AATTTGAAATT-AATAT--ACCGGC-----------ATATGG--AGAACCTTAAT-TTTGTTTTTAT-----TTTGGAAG---GGGAATAAC-TCC-TGTAAATGGAT--GAA
gi|111148 : tatATTTACACCTAAC------------GTTAC--TTCTGAAAA-G--TA----TA-------TATATCTATATGATGCACATA-TG------AAACT-AGAAT-ATCTC--A---GT-----------ATATGT-GCAGAG--T-----TTGTTTCTAT-----TTTGAAAAAGGG-GCATAAC-TCT-TGTAAAT
gi|111149 : AT--TTCCGAAAG-A-ACAATAATG-------TAAACAT-T--------TGTGCTA------AATTT-ACGTTTATTGTTTAC--GA-----------ATA-GT-TGCGTC--TGGT-TTTCTTAATGTCAGAAGTTGATAAGAA-TG--TAAT-TGTATATAAAAGG-----AAAG-AA-A-CTGTA-A-GCTGG---ACTTTGGTTTCTTATTTTAA-A--TAT-T-C-A-----------GA-C--ATAA-----AA----T-A--CA----GT-AG-AACTTCGATGTCTCGGACCAGACGGAACTGGACAAAATAG
gi|111150 : AT--------TATG-TA------AAGTT-ATATT-ACCGT--A---GC-----------ATATGT-TAAGAC--TGTT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-ACT-TGTAAATGGTT--GAA
gi|111150 : aacaacaacataCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTTAAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CT----GT-AG-AACTTCGATGGATCGAACCCGTCAGGACTGAACAAAATAGaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcctgagttgtatcggaatgatagaacttatttaaagtatataaagatgaatactgtagaacttcgatggatcgaacccgtcaggactgaacaaaatag
gi|111151 : aacaacaacataattatgtaaagttatattaccgtagcatatgttaagactgtttttgttcctgtgttgaaaaaaagtgcataacacttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TAAGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAT-TCT-TGTAAATGATT--GAA
gi|111151 : AAGTGTAAAACATAT-AATAATTTCCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTCTAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AC-AACTTCGATGGATCGAACCAAACGGGACTGAACAAAATAGaaacattatatttggcagatcttcaacagcaagtgtaaaacatataataatttcctgagttgtatcggaatgatagaacttattctaagtatataaagatgaatacagtacaacttcgatggatcgaaccaaacgggactgaacaaaatag
gi|111153 : ttattatgtaaagttacattaccatagcatatgttaagactatttttgttcctgtgttgaaaaaagtgcataattcttgtaaatgattgaaaaacattatatttggcagatcttcaacagcAAACGCACATATA-TTT-TATAAATTGT----AATGCAG-A-T---A-ATAA-AC---AA--------CACATGCCAA----TAT-A-T-A------------------T-------A-----T-T--CA----GT-AT-AACTTCGATGGCTCGAACCCGAGGGGACTGGACAAAATAG
gi|111154 : CT-TGAAAAGGGGT--GAA----A-A-T---G-ATGTTAA---AAAG------CATAT---AA-A--AAA-A-A-A-----------AA-G--AT-------A-----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111155 : T--GAATA-AA-ACTC----ATCATAA---A----------TTGTTAAAACA--CAT-A-TTA-----------AA-G--A-GA-----AGAAAGT-A--CA----GT-AG-AACTTCAATAGCTCGAACCTGATGGGACTGGACAAAACAG
gi|111158 : TAATGG---AA--------CATATT--------TAT-A-TTA-----------AA-C--AT-------A-----T-G--CA----GT-AG-AACTTTGATGACTTGAACCTGACAGGACTGGACAAAACAG
gi|111159 : ATCG---AA--------CACATTCCAA-G--TAT-A-TCATGATTTAGAACAA-A--ATGT-----A-----T-A--CA----GA-AG-ATCTTTGATGACTCGAACCCGACAGGACTGGACAAAATAG
gi|111160 : ATAGCGTAA--------CTTGTGCAGA-GCCTGT-A-T-A-----------TA-T--GTAC-----A-----T-A--CA----GT-AA-AACTTCGATAGCTCGAACCCGGCGGGACTGGACAAA
gi|111162 : AG---AG--------TTTATTTC------TCT-G-T-A-----------AG-G--AT---------------A--CA----GT-AG-AACTTCGACAACTCGAACCCGATGGGACTGGACAAAATAG
gi|111164 : ---AA--------CTTATTTTGG-G--CAT-T-T-T-----------CA-A--GCAA-----C-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111165 : A--------TTTAT--CAA-A--TAG-A-C-A-----------TA-G--AC-------A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACGCGACGGGACTGGACAAAATAG
gi|111166 : A--------CTTTATCTAATG--TAT-AGT-A-----------AC-A--TTCA-----A-----T-AGACA----GT-AG-AACTTCGATGGCTCGAACTCGACGGGACTGGGCATAATAG
gi|111169 : TTCCAA-A--GAT---T-A-----------AA-G---TAA-----G-----T-A--CA----GT-AG-AACCTTGATGGTTCGAACTTGACAGAGCTTGACAAAATA
gi|111170 : CAC-G--TGTGA-T-A-----------AA-ACTATGA-----AA----T-A--CA----GT-AG-AACTTCGATGGCTCGGACCCGACGGGACTGGACAAAATA
gi|111172 : AA-G--TAT-A-T-A-----------TA-T--AT-------A-----T-A--CA----GT-AG-AACTTCTATGGTTCAAACTTAACAGGACTGGACAAAATAG
gi|111174 : -G--TAT-A-T-A-----------AT-T--ATG------------T-A--CT----GT-AGTAACCTCGATGGCTCGAACCCGACGAGACTTAACAAAATAG
gi|111177 : --TGT-A-T-A-----------AT-T--AT-------A-----T-A--CA----GT-AG-AACTTCGATAGCTTGAACCTGACGGGACTGAACAAAATAG
gi|111178 : --TAT-A-C-A-----------AACA--ATG------------T-A--CA----GT-GG-AACTTCGATGGCTTGAACCTGACGGGACTGGACAAAACAG
gi|111180 : --TAT-A-T-A-----------TA-T--ATAT-----A-----T-A--CA----GT-AG-ATTTTTGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111181 : --TAT-A-T-A-----------AA-T--ATCATCCAGG-----T-A--CA----GA-AG-AACTTTGATGGTTCGAACACGACGGGACTGGGCAAAATAG
gi|111182 : AT-A-T-A-----------CG-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCGTTGGCTCGAACTCGACAGGATTGAACAAAATAG
gi|111183 : AT-A-C-G-----------AA-T--ATGT-----G-----T-A--CA----GT-AG-AATTTTAATGGCTCGAACCCGACGGGACTGGACAAA
gi|111184 : AT-A-C-A-----------AA-ACTATAT-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGACTGGTCAA
gi|111185 : AC-A-T-A-----------AA-G--CT-------A-----T-A--CA----GT-AG-AACTTTGTTCGCTCGAACTCGATGAGACTGGACAAAATAG
gi|111188 : T-G-T-A-----------AA-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCTATAGTTCGAACCCGACCGGACTGGGCAAAATAG
gi|111189 : T-A-T-A-----------TA-T--ACAA-----A-----T-A--AA----GT-AG-AACTTTGATAATTTGAACCCGACGGGACTGGGCAAAATAG
gi|111191 : -A-T-A-----------AATG--TTGACAT--A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGAATGGACAAACTAG
gi|111192 : -A-T-A-----------GA-A--ATCAT----A-----T----CA----GT-AG-AACTTCAATGGATTGAACTCGACGGGACTCGACAAAATAG
gi|111199 : -----------AA-A--ATGATTAT-A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACTGGAGGGGACTGGACAAAATAG
gi|111201 : A-A--ATAA-----A-----T-A--CATACCGT-AG-AACTTCGATGGCTCGAACCCGACAGAACTGGACAAAAT
gi|111202 : A-A--ATAA-----A-----TTA--AA----GT-AG-ACCTTCTATGGATCGAACATGACGGGACTGAACAAAATAG
gi|111203 : -G--AT-A-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCAACGAGACTGG---AAATAG
gi|111204 : --ATCA-----A-----T-A--CA----GC-GG-AACTTCGATTGCTCGAACACGACGGGGCTGTACAAAATAG
gi|111208 : TGAT----A-----T-A--TA----GT-AG-AACTTTGATGGCCCAAACCCGACAAAACTGGACAAAATAG
gi|111209 : TAA-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111210 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACGGGACTGGACAAAA
gi|111211 : TAA-----A-----T-A--CA----GT-AG-GACTTGGATGGTTCAAACCCGACGGGACTGTACAAACTAG
gi|111212 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCTGGCGGGACTGGTCCAAATAG
gi|111213 : TAA-----A-----G-A--CA----GT-AG-AACTTCGATGGCTCGAACCTGACATGATTAGACAAAATAG
gi|111214 : TGA-----A-----T-A--CA-----------ACTTCGGTGGCTCGAACCCGACGGGATTGGACAAAACAG
gi|111217 : A-----G-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111219 : A-----A-----T-A--CA----GT-AG-AACTTCGCTCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111220 : A-----A-----T-A--CA----GT-AG-AACTTCGATCGCTCGAACTCGACGGGACTGGTCAAAATAG
gi|111221 : A-----A-----T-A--CC----GT-AG-AACTTCGATGACTCGAACCCAACAGGACTGGACAAAATAG
gi|111222 : A-----A-----T-A--CA----GC-AG-AACTTCGATGGCTCGAACCTGACAAGACTGGACACAATAG
gi|111223 : A-----G-----T-A--CA----GT-AG-AACTTCAATGGCTCAAACCTGACGTGACTGGACAAAATAG
gi|111224 : A-----A-----T-A--CA----GT-AG-AACTTTGATCGCTCAAACTCAACGGGACTGGACAAAATAG
gi|111225 : A-----A-----T-A--TA----GT-A--AACTTCGATGGCTCGAACACGGCGGGACTGAACAAAATGG
gi|111226 : A-----A-----C-A--CA----GT-AG-AACTTCGATGACTCTAACCCGACGGGACTTGACAAAACAG
gi|111227 : A-----A-----T-A--CA----GT-AG-AACTTCGATAGATTGAATCGGACGGGACATGACAAAACAG
gi|111231 : -----A-----T-A--CA----GT-AA-AACTTCGATGGCTCGAACCCGACGAGACTGGATAAAATAG
gi|111232 : -----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCTGACGGGACTGAACAAAAT
gi|111233 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111234 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTTGACGGGACTGGACAAAATAG
gi|111235 : -----A-----T-A--CA----GT-AG-ATCTTCAATAGATCGAACCCGACGGGACTGGACAAAATAG
gi|111236 : -----A-----T-A--CA----GT-AG-AATTTCGATGATTCGAATCCGACGGGACTGGACAAAATAG
gi|111237 : -----A-----T-A--TA----GT-AG-AACTTCAATGGCTCGAACCCGACGGGACTGCACAAAATA
gi|111238 : -----A-----T-G--CA----GT-AG-AACTCCGATGGCTCGAACCCAACGGGACTGGATAAAATAG
gi|111240 : -----A-----T-A--CA----GT-CG-AACTTTGATGGCTCGAACCCGACGGGACTGGACAAAAAAG
gi|111241 : -----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACTCGACGGGACAGGACAAAATA
gi|111242 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAATCCGACGGGATGGGACGAAATAG
gi|111243 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTTGAATCTGACAGAACTGGACAAAATAG
gi|111244 : -----A-----T-A--CA----GT-AG-AACTTAGATGGATCGAACCCGAGGGGACTGGGAAAAGTAG
gi|111246 : -----A-----T-A--CA----GT-AG-AAGTTTGATGGCTTGAACCCGATGGGACTGGACAAAACAG
gi|111247 : -----A-----T-A--TA----G--AG-AACTTCGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111248 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCACAAAACTGATGGGACTGGACAAAATAG
gi|111249 : -----A-----T-A--CA----GT-AG-AACTTCAATCCCTCGAACACGACGGGATTGGACAAAATAG
gi|111250 : -----A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACCCGACGGGAC
gi|111251 : -----A-----T-A--CA----GT-AG-AGCTTCGATGGCTCGAACCCGACAGGGCTGTAAAAACTAG
gi|111252 : -----A-----T-A--CA----GT-AG-AACCTCGATGGCTCGAAACCTGTGGGACTGTACAAAATAG
gi|111253 : -----A-----T-T--CA----GT-AG-AACTTCGATGGCTCGAACCCGGAAGGACTGAACCAAAT
gi|111254 : -----A-----T-A--CA----GTGAG-AACTTCGATGGCTCGAACCCGAAAGAACTGGACAAATTAG
gi|111255 : -----A-----T-A--CA----GT-AG-CACTTCGATGGTTTAAACCCGACGGGACTTGACAATATAG
gi|111267 : -----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111268 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTCGACGGTACTGGACAAAAT
gi|111269 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACTCTACGGAACTGAACAAAATAG
gi|111270 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACACGACGGGACTGCACAACATAG
gi|111271 : -----T-A--CA----GT-AG-AACTTCGATGACTCGAACCCGTCGGGACTGTACCAAATA
gi|111272 : -----T-A--CA----GT-AG-AACTCCGATGGCTCGAACCTGATTGGACTGGACAAAATAG
gi|111273 : -----T-A--CA----GT-AG-AACTTTGATAGCTCAAACCCGACGGGACTGGACAAGTTAG
gi|111274 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACAAGACTGGACTGGACAAAATAG
gi|111276 : -----T-A--CA----GT-AG-AACTTCAATGGCTCGAACACGACGGGACTGGACGA
gi|111277 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCTACGCGACTTGACAAATTAG
gi|111286 : -A--CA----GT-AG-AACTTTGATGGCTCGAACACGGCAGGACTGGACAAAATA
gi|111287 : -A--CA----GT-AG-AACTTTGATGACTCTAACCCGATGGGACTGGACAAAAT
gi|111291 : --CA----GT-AG-AACTTCAATGGCTCGAACCCTACGGGACTTTACAAAATAG
Alignments
lowQualScore : 11111 55555555555555 111111111111 1 1111111 11111111111 1111111
lowQualScore : 1 55 00000 2 1 11111111111111 777777777777 44 5 3 6 9999 3333333 99999999 2 888888 3 3 44 888 44444444444 3 1 44 2 3 77777 0 2 2 2 33 33 3 2 1 2 333 99999999 3 22 1 1 3 55555555555 6666 0000000 22222 0 00 0000 0 0
lowQualScore : . .. ..... . . .............. ............ .. . . . .... ....... ........ . ...... . . .. ... ........... . . .. . . ..... . . . . .. .. . . . . ... ........ . .. . . . ........... .... ....... ..... . .. .... . .
lowQualScore : 9 55 00000 3 4 77777777777777 111111111111 22 6 1 2 6666 1111111 77777777 9 222222 1 1 22 555 66666666666 1 0 22 1 1 77777 8 7 5 5 11 22 1 9 9 9 777 55555555 3 00 1 1 3 11111111111 8888 0000000 00000 4 66 9999 4 4
consensus : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
Reference ( family-213 ) : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111135 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAATTGCAGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAACTAACTAAAATAC----------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACTCGACGGGACTGAACAAAATAG
gi|111136 : ATTTTAAAACATAGCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGCATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTGATTAGCTTACTAAAA--------------A-TACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGC-TACGAT--TATT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--TA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111137 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATTACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATTAAAGAAATATAAAGCTTCAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCATAATACATCAGCTATTCACATTTATAAGCTTACTAAAATAC----------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGGC--TAAT-TTTGTTCCTGT-----GTTGATAAAAAGTGCATAAC-TCT-TGTAAGTGGCT--GAATG-AA-A-TCGGA-ATAATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111138 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTCTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAAT----------------ACGCTGCAATTTTCACTTGAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAATT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TAGGA-ATGATAG---AA--------TTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCAATGGATCGAATCCGACGGGACTGAACAAAATAG
gi|111139 : ATTTTAAAACATATCGCGTGTTTCAATAGCATACTTACATGACATGATCTGT--AACAAATAGTTTGTGAATGCTTTAGT-----GTTTACTTTTTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGTGTGATATATCAGCTATTCACATCTATTTACTTACTAAAATACTTT--AAAGGGA-CACGCTGCAAGTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTA-ACATT-ACCAC--A---GC-----------GTATGA-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111139 : CT--GAGTT-GT-A-TCGGA-ATGAGAG---AA--------CTTAATCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AATTTCGATCG-TCGAACCCGACGGGCCTAAACAAAGTAGaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcctgagttgtatcggaatgagagaacttaatccaagtatataaagatgaatacagtagaatttcgatcgtcgaacccgacgggcctaaacaaagtag
gi|111140 : attttaaaacatatcgcgtgtttcaatagcatacttacatgacatgatctgtaacaaatagtttgtgaatgctttagtgtttacttttttaaacatgaaacactagaaggaatataaagctttagataattgcggtattactaatcaaagcaaaaagatttgtaaaactgctgtgtgatatatcagctattcacatctatttacttactaaaatactttaaagggacacgctgcaagtttcacttaaaactatttctgaaaagcatatatacttattatgtaaagtaacattaccacagcgtatgataagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcATTTTAAAACATATCGCGTGTTCCATTAGCATACTAACCTGACGTGATCTGT--AAGAAATATTTTGTGAATGTTTGAGT-----GTTTACTTTATTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTTACCAAAGCAAATAGATTTGTTAAACTGCTGCGTAATAGATCAGCTATTTACATTTATAAACTAATCAAAATACTTTGAAG--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TGTATTTAT--------TATG-TA------AAG
gi|111141 : ATTTTAAAATATATCGCGTGTTTCAATAGCGAACTAACATGACATAATCTGT--AAGAATTTTTTTCTGAATATTTTAGT-----GTTAACTTTATTAAACATGAAATACCAGAAGGAAGATAAAGCTTTAGATAATTGCGGTATCACTAATCAAAGCAAAGACATTTGTAAAACTGCTGCGCAATAAATCAGCTATTCACATTTATTAGCTTACTAAAGTACTTT--AAAGGGA-CACGCAGCAATTTTC-------------------ACTAT--TTCTG-AAA-A-GTA----TA-------TATACTTAT--------TAT
gi|111142 : ATTTCAAATCATATCGCGTGTTTCAATAGCGTGCTAACACGATAGTATATGTTTAAGAAATATTTTGTGAATGTTTTAGT-----GTTTGCTTT----------AGATAATTGCAG---TACA---CT----AT-ATTAC----TTACA----AAAACAAATATATTTGTGAAACTGCTGCGTAATATATCAGCCATTCACATTTATAGGCCAACTTAAGTACTTT--AAAGGGA-CACACTGCAATTTTCATTTTAA------------AGTAT--TTCTGAGAA-GCATAT---TAATTAAATTATGCTCAT--------TATG-TAAATATGAAGAT-ATATC-ACAAC--A---GCAAGGGTCATAGATATGCGTAT-AC--TAATGTTTGTTTCTGT-----GTTGGAAAAATGTGCATACG-TGT-TGTAAAT--CTAAAAATA-AACA-TAATATATGACAG---AT--------CTT
gi|111143 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACT
gi|111144 : TTTTAAAATATATCGCGTGTTTCAATAGCGTACAAACATGACATGAGCTGT--AATAAATAGTTTGTGAATATTTTAGTTAAACGTTTTCTTTACTAAACATGAAACACTAGAAGGAATTAAAAGCGTTAGATAATTGCGGTATAACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGCATAATATATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACGTT-ACAAT--A---GT-----------ATATGT-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111144 : -TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAAAAAAATAGaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgtcggaatgatagaacttattccaagtatataaagatgaatacagtagaacttcgatggatcgaacccgacgggactgaaaaaaatag
gi|111145 : ttttaaaatatatcgcgtgtttcaatagcgtacaaacatgacatgagctgtaataaatagtttgtgaatattttagttaaacgttttctttactaaacatgaaacactagaaggaattaaaagcgttagataattgcggtataactaatcaaagcaaaaagatttgtaaaactgctgcataatatatcagctattcacatttattagcttactaaaatactttaaaaggacacgctgcaattttcacttaaaactatttctgaaaagcatatatacttattatgtaaagttacgttacaatagtatatgttaagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgTAAAGCACATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAACTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATAC----------------ACTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATGGAACCCGACGGGACTGAACAAAATAG
gi|111146 : CTTA--AA--GGAACACACAGCAATTTTTA--TAAATTTTCTTTTTTTACTATATTTCTGTAAA-ATACA----TAA------TATATTTG----------ATG-CA------AATTTGAAATT-AATAT--ACCGGC-----------ATATGG--AGAACCTTAAT-TTTGTTTTTAT-----TTTGGAAG---GGGAATAAC-TCC-TGTAAATGGAT--GAA
gi|111148 : tatATTTACACCTAAC------------GTTAC--TTCTGAAAA-G--TA----TA-------TATATCTATATGATGCACATA-TG------AAACT-AGAAT-ATCTC--A---GT-----------ATATGT-GCAGAG--T-----TTGTTTCTAT-----TTTGAAAAAGGG-GCATAAC-TCT-TGTAAAT
gi|111149 : AT--TTCCGAAAG-A-ACAATAATG-------TAAACAT-T--------TGTGCTA------AATTT-ACGTTTATTGTTTAC--GA-----------ATA-GT-TGCGTC--TGGT-TTTCTTAATGTCAGAAGTTGATAAGAA-TG--TAAT-TGTATATAAAAGG-----AAAG-AA-A-CTGTA-A-GCTGG---ACTTTGGTTTCTTATTTTAA-A--TAT-T-C-A-----------GA-C--ATAA-----AA----T-A--CA----GT-AG-AACTTCGATGTCTCGGACCAGACGGAACTGGACAAAATAG
gi|111150 : AT--------TATG-TA------AAGTT-ATATT-ACCGT--A---GC-----------ATATGT-TAAGAC--TGTT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-ACT-TGTAAATGGTT--GAA
gi|111150 : aacaacaacataCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTTAAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CT----GT-AG-AACTTCGATGGATCGAACCCGTCAGGACTGAACAAAATAGaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcctgagttgtatcggaatgatagaacttatttaaagtatataaagatgaatactgtagaacttcgatggatcgaacccgtcaggactgaacaaaatag
gi|111151 : aacaacaacataattatgtaaagttatattaccgtagcatatgttaagactgtttttgttcctgtgttgaaaaaaagtgcataacacttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TAAGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAT-TCT-TGTAAATGATT--GAA
gi|111151 : AAGTGTAAAACATAT-AATAATTTCCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTCTAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AC-AACTTCGATGGATCGAACCAAACGGGACTGAACAAAATAGaaacattatatttggcagatcttcaacagcaagtgtaaaacatataataatttcctgagttgtatcggaatgatagaacttattctaagtatataaagatgaatacagtacaacttcgatggatcgaaccaaacgggactgaacaaaatag
gi|111153 : ttattatgtaaagttacattaccatagcatatgttaagactatttttgttcctgtgttgaaaaaagtgcataattcttgtaaatgattgaaaaacattatatttggcagatcttcaacagcAAACGCACATATA-TTT-TATAAATTGT----AATGCAG-A-T---A-ATAA-AC---AA--------CACATGCCAA----TAT-A-T-A------------------T-------A-----T-T--CA----GT-AT-AACTTCGATGGCTCGAACCCGAGGGGACTGGACAAAATAG
gi|111154 : CT-TGAAAAGGGGT--GAA----A-A-T---G-ATGTTAA---AAAG------CATAT---AA-A--AAA-A-A-A-----------AA-G--AT-------A-----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111155 : T--GAATA-AA-ACTC----ATCATAA---A----------TTGTTAAAACA--CAT-A-TTA-----------AA-G--A-GA-----AGAAAGT-A--CA----GT-AG-AACTTCAATAGCTCGAACCTGATGGGACTGGACAAAACAG
gi|111158 : TAATGG---AA--------CATATT--------TAT-A-TTA-----------AA-C--AT-------A-----T-G--CA----GT-AG-AACTTTGATGACTTGAACCTGACAGGACTGGACAAAACAG
gi|111159 : ATCG---AA--------CACATTCCAA-G--TAT-A-TCATGATTTAGAACAA-A--ATGT-----A-----T-A--CA----GA-AG-ATCTTTGATGACTCGAACCCGACAGGACTGGACAAAATAG
gi|111160 : ATAGCGTAA--------CTTGTGCAGA-GCCTGT-A-T-A-----------TA-T--GTAC-----A-----T-A--CA----GT-AA-AACTTCGATAGCTCGAACCCGGCGGGACTGGACAAA
gi|111162 : AG---AG--------TTTATTTC------TCT-G-T-A-----------AG-G--AT---------------A--CA----GT-AG-AACTTCGACAACTCGAACCCGATGGGACTGGACAAAATAG
gi|111164 : ---AA--------CTTATTTTGG-G--CAT-T-T-T-----------CA-A--GCAA-----C-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111165 : A--------TTTAT--CAA-A--TAG-A-C-A-----------TA-G--AC-------A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACGCGACGGGACTGGACAAAATAG
gi|111166 : A--------CTTTATCTAATG--TAT-AGT-A-----------AC-A--TTCA-----A-----T-AGACA----GT-AG-AACTTCGATGGCTCGAACTCGACGGGACTGGGCATAATAG
gi|111169 : TTCCAA-A--GAT---T-A-----------AA-G---TAA-----G-----T-A--CA----GT-AG-AACCTTGATGGTTCGAACTTGACAGAGCTTGACAAAATA
gi|111170 : CAC-G--TGTGA-T-A-----------AA-ACTATGA-----AA----T-A--CA----GT-AG-AACTTCGATGGCTCGGACCCGACGGGACTGGACAAAATA
gi|111172 : AA-G--TAT-A-T-A-----------TA-T--AT-------A-----T-A--CA----GT-AG-AACTTCTATGGTTCAAACTTAACAGGACTGGACAAAATAG
gi|111174 : -G--TAT-A-T-A-----------AT-T--ATG------------T-A--CT----GT-AGTAACCTCGATGGCTCGAACCCGACGAGACTTAACAAAATAG
gi|111177 : --TGT-A-T-A-----------AT-T--AT-------A-----T-A--CA----GT-AG-AACTTCGATAGCTTGAACCTGACGGGACTGAACAAAATAG
gi|111178 : --TAT-A-C-A-----------AACA--ATG------------T-A--CA----GT-GG-AACTTCGATGGCTTGAACCTGACGGGACTGGACAAAACAG
gi|111180 : --TAT-A-T-A-----------TA-T--ATAT-----A-----T-A--CA----GT-AG-ATTTTTGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111181 : --TAT-A-T-A-----------AA-T--ATCATCCAGG-----T-A--CA----GA-AG-AACTTTGATGGTTCGAACACGACGGGACTGGGCAAAATAG
gi|111182 : AT-A-T-A-----------CG-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCGTTGGCTCGAACTCGACAGGATTGAACAAAATAG
gi|111183 : AT-A-C-G-----------AA-T--ATGT-----G-----T-A--CA----GT-AG-AATTTTAATGGCTCGAACCCGACGGGACTGGACAAA
gi|111184 : AT-A-C-A-----------AA-ACTATAT-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGACTGGTCAA
gi|111185 : AC-A-T-A-----------AA-G--CT-------A-----T-A--CA----GT-AG-AACTTTGTTCGCTCGAACTCGATGAGACTGGACAAAATAG
gi|111188 : T-G-T-A-----------AA-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCTATAGTTCGAACCCGACCGGACTGGGCAAAATAG
gi|111189 : T-A-T-A-----------TA-T--ACAA-----A-----T-A--AA----GT-AG-AACTTTGATAATTTGAACCCGACGGGACTGGGCAAAATAG
gi|111191 : -A-T-A-----------AATG--TTGACAT--A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGAATGGACAAACTAG
gi|111192 : -A-T-A-----------GA-A--ATCAT----A-----T----CA----GT-AG-AACTTCAATGGATTGAACTCGACGGGACTCGACAAAATAG
gi|111199 : -----------AA-A--ATGATTAT-A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACTGGAGGGGACTGGACAAAATAG
gi|111201 : A-A--ATAA-----A-----T-A--CATACCGT-AG-AACTTCGATGGCTCGAACCCGACAGAACTGGACAAAAT
gi|111202 : A-A--ATAA-----A-----TTA--AA----GT-AG-ACCTTCTATGGATCGAACATGACGGGACTGAACAAAATAG
gi|111203 : -G--AT-A-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCAACGAGACTGG---AAATAG
gi|111204 : --ATCA-----A-----T-A--CA----GC-GG-AACTTCGATTGCTCGAACACGACGGGGCTGTACAAAATAG
gi|111208 : TGAT----A-----T-A--TA----GT-AG-AACTTTGATGGCCCAAACCCGACAAAACTGGACAAAATAG
gi|111209 : TAA-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111210 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACGGGACTGGACAAAA
gi|111211 : TAA-----A-----T-A--CA----GT-AG-GACTTGGATGGTTCAAACCCGACGGGACTGTACAAACTAG
gi|111212 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCTGGCGGGACTGGTCCAAATAG
gi|111213 : TAA-----A-----G-A--CA----GT-AG-AACTTCGATGGCTCGAACCTGACATGATTAGACAAAATAG
gi|111214 : TGA-----A-----T-A--CA-----------ACTTCGGTGGCTCGAACCCGACGGGATTGGACAAAACAG
gi|111217 : A-----G-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111219 : A-----A-----T-A--CA----GT-AG-AACTTCGCTCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111220 : A-----A-----T-A--CA----GT-AG-AACTTCGATCGCTCGAACTCGACGGGACTGGTCAAAATAG
gi|111221 : A-----A-----T-A--CC----GT-AG-AACTTCGATGACTCGAACCCAACAGGACTGGACAAAATAG
gi|111222 : A-----A-----T-A--CA----GC-AG-AACTTCGATGGCTCGAACCTGACAAGACTGGACACAATAG
gi|111223 : A-----G-----T-A--CA----GT-AG-AACTTCAATGGCTCAAACCTGACGTGACTGGACAAAATAG
gi|111224 : A-----A-----T-A--CA----GT-AG-AACTTTGATCGCTCAAACTCAACGGGACTGGACAAAATAG
gi|111225 : A-----A-----T-A--TA----GT-A--AACTTCGATGGCTCGAACACGGCGGGACTGAACAAAATGG
gi|111226 : A-----A-----C-A--CA----GT-AG-AACTTCGATGACTCTAACCCGACGGGACTTGACAAAACAG
gi|111227 : A-----A-----T-A--CA----GT-AG-AACTTCGATAGATTGAATCGGACGGGACATGACAAAACAG
gi|111231 : -----A-----T-A--CA----GT-AA-AACTTCGATGGCTCGAACCCGACGAGACTGGATAAAATAG
gi|111232 : -----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCTGACGGGACTGAACAAAAT
gi|111233 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111234 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTTGACGGGACTGGACAAAATAG
gi|111235 : -----A-----T-A--CA----GT-AG-ATCTTCAATAGATCGAACCCGACGGGACTGGACAAAATAG
gi|111236 : -----A-----T-A--CA----GT-AG-AATTTCGATGATTCGAATCCGACGGGACTGGACAAAATAG
gi|111237 : -----A-----T-A--TA----GT-AG-AACTTCAATGGCTCGAACCCGACGGGACTGCACAAAATA
gi|111238 : -----A-----T-G--CA----GT-AG-AACTCCGATGGCTCGAACCCAACGGGACTGGATAAAATAG
gi|111240 : -----A-----T-A--CA----GT-CG-AACTTTGATGGCTCGAACCCGACGGGACTGGACAAAAAAG
gi|111241 : -----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACTCGACGGGACAGGACAAAATA
gi|111242 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAATCCGACGGGATGGGACGAAATAG
gi|111243 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTTGAATCTGACAGAACTGGACAAAATAG
gi|111244 : -----A-----T-A--CA----GT-AG-AACTTAGATGGATCGAACCCGAGGGGACTGGGAAAAGTAG
gi|111246 : -----A-----T-A--CA----GT-AG-AAGTTTGATGGCTTGAACCCGATGGGACTGGACAAAACAG
gi|111247 : -----A-----T-A--TA----G--AG-AACTTCGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111248 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCACAAAACTGATGGGACTGGACAAAATAG
gi|111249 : -----A-----T-A--CA----GT-AG-AACTTCAATCCCTCGAACACGACGGGATTGGACAAAATAG
gi|111250 : -----A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACCCGACGGGAC
gi|111251 : -----A-----T-A--CA----GT-AG-AGCTTCGATGGCTCGAACCCGACAGGGCTGTAAAAACTAG
gi|111252 : -----A-----T-A--CA----GT-AG-AACCTCGATGGCTCGAAACCTGTGGGACTGTACAAAATAG
gi|111253 : -----A-----T-T--CA----GT-AG-AACTTCGATGGCTCGAACCCGGAAGGACTGAACCAAAT
gi|111254 : -----A-----T-A--CA----GTGAG-AACTTCGATGGCTCGAACCCGAAAGAACTGGACAAATTAG
gi|111255 : -----A-----T-A--CA----GT-AG-CACTTCGATGGTTTAAACCCGACGGGACTTGACAATATAG
gi|111267 : -----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111268 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTCGACGGTACTGGACAAAAT
gi|111269 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACTCTACGGAACTGAACAAAATAG
gi|111270 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACACGACGGGACTGCACAACATAG
gi|111271 : -----T-A--CA----GT-AG-AACTTCGATGACTCGAACCCGTCGGGACTGTACCAAATA
gi|111272 : -----T-A--CA----GT-AG-AACTCCGATGGCTCGAACCTGATTGGACTGGACAAAATAG
gi|111273 : -----T-A--CA----GT-AG-AACTTTGATAGCTCAAACCCGACGGGACTGGACAAGTTAG
gi|111274 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACAAGACTGGACTGGACAAAATAG
gi|111276 : -----T-A--CA----GT-AG-AACTTCAATGGCTCGAACACGACGGGACTGGACGA
gi|111277 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCTACGCGACTTGACAAATTAG
gi|111286 : -A--CA----GT-AG-AACTTTGATGGCTCGAACACGGCAGGACTGGACAAAATA
gi|111287 : -A--CA----GT-AG-AACTTTGATGACTCTAACCCGATGGGACTGGACAAAAT
gi|111291 : --CA----GT-AG-AACTTCAATGGCTCGAACCCTACGGGACTTTACAAAATAG
blockSeqs : A TT TAAAC G A TTTAAAGGGAC TTTTCTTTTTTT AT A A C ATAA ATTAAAT ATGATGCA C AATATG G T TT CCG AAGGGTCATAG G C CT T G CAGAA A A T AA GC C C C T CGT TTTGGTTT C CC G G T TGATTTAGAAC ACT CATCCAG GAAAG
blockSeqs : A . . G A TTTGAAGGGAC . . A . T T A . . . . . . C . . C . A . . . . C . G . . C . . AG T . . . T . ACT GATTAT A
blockSeqs : A . . G A TTTAAAGGGAC . . A . . . . . . . . . . . . . C . T . . . . T . G . . A . . . . . . . C . CA GACAT A
blockSeqs : C . . T T TTTAAAGGGAC . . T . . . . . . . . . . . . . A . T . . . . T . G . . C . . . . . . . . . TG CAT .
blockSeqs : C . . A T TTTAAAAGGAC . . A . . . . . . . . . . . . . T . A . . . . C . T . . A . . . . . . . . . G GAT .
blockSeqs : C . . A T TTAAAGGAAC . . A . . . . . . . . . . . . . A . T . . . . C . A . . C . . . . . . . . . G GA .
blockSeqs : C . . A A AT . . . . . . . . . . . . . . . . C . A . . . . T . G . . C . . . . . . . . . G GA .
blockSeqs : A . . G T . . . . . . . . . . . . . . . . . G . A . . . . C . G . . T . . . . . . . . . G GA .
blockSeqs : C . . . A . . . . . . . . . . . . . . . . . A . G . . . . A . T . . C . . . . . . . . . G GA .
blockSeqs : A . . . . . . . . . . . . . . . . . C . T . . . . T . T . . C . . . . . . . . . G GA .
blockSeqs : . . . . . . . . . . . . . . . . A . T . . . . C . A . . C . . . . . . . . . C GA .
blockSeqs : . . . . . . . . . . . . . . . A . . . . . . T . . . . . . . . . . . . . . G AA .
blockSeqs : . . . . . C . . . . . . . . . . . . G GA .
blockSeqs : . . . T . . . . . . . . . G GA .
blockSeqs : . G . . . . . . . . . G GA .
blockSeqs : . . . . . . . . . . C GT .
blockSeqs : . . . . . . . . . A AC .
blockSeqs : . . . . . . . . T AA .
blockSeqs : . . . . . . . G CA .
blockSeqs : . . . . . . . A AA .
blockSeqs : . . . . . . G GA .
blockSeqs : . . . . . . A AT .
blockSeqs : . . . . . . G AT .
blockSeqs : . . . . . T GT .
blockSeqs : . . . . . T AT .
blockSeqs : . . . . . T AT .
blockSeqs : . . . . . T AA .
blockSeqs : . . . . T AA .
blockSeqs : . . . . C AA .
blockSeqs : . . . . T CA .
blockSeqs : . . . . G AA .
blockSeqs : . . . . C AA .
blockSeqs : . . . . T AA .
blockSeqs : . . . . A AA .
blockSeqs : . . . . A AA .
blockSeqs : . A GA .
blockSeqs : A G .
blockSeqs : G G .
blockSeqs : . A .
blockSeqs : . .
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blockSeqCons : TTTAAAGGGAC***
originalCons : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTT--AA--GGA-CACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
finalCons : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAGGGAC---ACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
Alignments
lowQualScore : 11111 33333333333 111111111111 1111111 11111111111 1111111
lowQualScore : 1 55 00000 2 1 00000000000 777777777777 44 8 8888 9999 3333333 99999999 2 888888 3 3 44 888 44444444444 3 1 44 2 3 77777 2 2 2 33 33 3 2 1 2 333 99999999 3 22 1 1 3 55555555555 6666 0000000 22222 0 00 0000 0 0
lowQualScore : . .. ..... . . ........... ............ .. . .... .... ....... ........ . ...... . . .. ... ........... . . .. . . ..... . . . .. .. . . . . ... ........ . .. . . . ........... .... ....... ..... . .. .... . .
lowQualScore : 9 55 00000 3 4 55555555555 111111111111 22 1 3333 6666 1111111 77777777 9 222222 1 1 22 555 66666666666 1 0 22 1 1 77777 7 5 5 11 22 1 9 9 9 777 55555555 3 00 1 1 3 11111111111 8888 0000000 00000 4 66 9999 4 4
consensus : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAGGGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
Reference ( family-213 ) : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAGGGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TANGAC--TANT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111135 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAATTGCAGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAACTAACTAAAATAC-------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACTCGACGGGACTGAACAAAATAG
gi|111136 : ATTTTAAAACATAGCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGCATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTGATTAGCTTACTAAAA------------ATACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA---ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGC-TACGAT--TATT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--TA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111137 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATTACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATTAAAGAAATATAAAGCTTCAGATAATTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCATAATACATCAGCTATTCACATTTATAAGCTTACTAAAATAC-------------GCTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAA-A-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGGC--TAAT-TTTGTTCCTGT-----GTTGATAAAAAGTGCATAAC-TCT-TGTAAGTGGCT--GAATG-AA-A-TCGGA-ATAATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAACAAAATAG
gi|111138 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTCTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATAGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATAC-------------GCTGCAATTTTCACTTGAA------------ACTAT--TTCTGAAAA-A--TA----TA-------TATACTTAT--------TATG-TA------AAATT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TATT-TTTGTTCCTGT-----GTTGAAAA-AAGTGCATAAC-TCT-TGTAAATGGTT--GAATG-AA-A-TAGGA-ATGATAG---AA--------TTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCAATGGATCGAATCCGACGGGACTGAACAAAATAG
gi|111139 : ATTTTAAAACATATCGCGTGTTTCAATAGCATACTTACATGACATGATCTGT--AACAAATAGTTTGTGAATGCTTTAGT-----GTTTACTTTTTTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGTGTGATATATCAGCTATTCACATCTATTTACTTACTAAAATACTTTAAAGGGACACGCTGCAAGTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTA-ACATT-ACCAC--A---GC-----------GTATGA-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111139 : CT--GAGTT-GT-A-TCGGA-ATGAGAG---AA--------CTTAATCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AATTTCGATCG-TCGAACCCGACGGGCCTAAACAAAGTAGaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcctgagttgtatcggaatgagagaacttaatccaagtatataaagatgaatacagtagaatttcgatcgtcgaacccgacgggcctaaacaaagtag
gi|111140 : attttaaaacatatcgcgtgtttcaatagcatacttacatgacatgatctgtaacaaatagtttgtgaatgctttagtgtttacttttttaaacatgaaacactagaaggaatataaagctttagataattgcggtattactaatcaaagcaaaaagatttgtaaaactgctgtgtgatatatcagctattcacatctatttacttactaaaatactttaaagggacacgctgcaagtttcacttaaaactatttctgaaaagcatatatacttattatgtaaagtaacattaccacagcgtatgataagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagttcaaatcatatattaatttcATTTTAAAACATATCGCGTGTTCCATTAGCATACTAACCTGACGTGATCTGT--AAGAAATATTTTGTGAATGTTTGAGT-----GTTTACTTTATTAAACATGAAACACTAGAAGGAATATAAAGCTTTAGATAATTGCGGTATTACTTACCAAAGCAAATAGATTTGTTAAACTGCTGCGTAATAGATCAGCTATTTACATTTATAAACTAATCAAAATACTTTGAAGGGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-ATA----TA-------TGTATTTAT--------TATG-TA------AAG
gi|111141 : ATTTTAAAATATATCGCGTGTTTCAATAGCGAACTAACATGACATAATCTGT--AAGAATTTTTTTCTGAATATTTTAGT-----GTTAACTTTATTAAACATGAAATACCAGAAGGAAGATAAAGCTTTAGATAATTGCGGTATCACTAATCAAAGCAAAGACATTTGTAAAACTGCTGCGCAATAAATCAGCTATTCACATTTATTAGCTTACTAAAGTACTTTAAAGGGACACGCAGCAATTTTC-------------------ACTAT--TTCTG-AAA-A-GTA----TA-------TATACTTAT--------TAT
gi|111142 : ATTTCAAATCATATCGCGTGTTTCAATAGCGTGCTAACACGATAGTATATGTTTAAGAAATATTTTGTGAATGTTTTAGT-----GTTTGCTTT----------AGATAATTGCAG---TACA---CT----AT-ATTAC----TTACA----AAAACAAATATATTTGTGAAACTGCTGCGTAATATATCAGCCATTCACATTTATAGGCCAACTTAAGTACTTTAAAGGGACACACTGCAATTTTCATTTTAA------------AGTAT--TTCTGAGAA-GCATAT---TAATTAAATTATGCTCAT--------TATG-TAAATATGAAGAT-ATATC-ACAAC--A---GCAAGGGTCATAGATATGCGTAT-AC--TAATGTTTGTTTCTGT-----GTTGGAAAAATGTGCATACG-TGT-TGTAAAT--CTAAAAATA-AACA-TAATATATGACAG---AT--------CTT
gi|111143 : ATTTTAAAACATATCGCGTGTTTCAATAGAGTACT
gi|111144 : TTTTAAAATATATCGCGTGTTTCAATAGCGTACAAACATGACATGAGCTGT--AATAAATAGTTTGTGAATATTTTAGTTAAACGTTTTCTTTACTAAACATGAAACACTAGAAGGAATTAAAAGCGTTAGATAATTGCGGTATAACTAATCAAAGCAAAAAGATTTGTAAAACTGCTGCATAATATATCAGCTATTCACATTTATTAGCTTACTAAAATACTTTAAAAGGACACGCTGCAATTTTCACTTAAA------------ACTAT--TTCTG-AAA-A-GCA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACGTT-ACAAT--A---GT-----------ATATGT-TAAGAC--TATT-TTTGTTCTTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGTT--GAA
gi|111144 : -TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCCGACGGGACTGAAAAAAATAGaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgtcggaatgatagaacttattccaagtatataaagatgaatacagtagaacttcgatggatcgaacccgacgggactgaaaaaaatag
gi|111145 : ttttaaaatatatcgcgtgtttcaatagcgtacaaacatgacatgagctgtaataaatagtttgtgaatattttagttaaacgttttctttactaaacatgaaacactagaaggaattaaaagcgttagataattgcggtataactaatcaaagcaaaaagatttgtaaaactgctgcataatatatcagctattcacatttattagcttactaaaatactttaaaaggacacgctgcaattttcacttaaaactatttctgaaaagcatatatacttattatgtaaagttacgttacaatagtatatgttaagactatttttgttcttgtgttgaaaaaaagtgcataactcttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaggtgcaaatcatatatttataacctgagttgtgTAAAGCACATCGCGTGTTTCAATAGAGTACTAACATGACATGATCTGT--AAGAAATATTTTGTGAATGTTTTAGT-----GTTTACTTTGTTAAACATGAAACAATAAAAGGAATATAAAGCTTTAGATAACTGCGGTATTACAAATCAAAGCAAAGAGATTTGTAAAACTGCTGCGTAATACATCAGCTATTCACATTTATTAGCTTACTAAAATAC-------------ACTGCAATTTTCACTTAAA------------ACTAT--TTCTGAAAAAA-ATA----TA-------TATACTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TACGAC--TAAT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-TCT-TGTAAATGGCT--GAATG-AA-A-TCGGA-ATGATAG---AA--------CTTATTCCAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AG-AACTTCGATGGATGGAACCCGACGGGACTGAACAAAATAG
gi|111146 : TATCTTAAAGGAACACACAGCAATTTTTA--TAAATTTTCTTTTTTTACTATATTTCTGTAAA-ATACA----TAA------TATATTTG----------ATG-CA------AATTTGAAATT-AATAT--ACCGGC-----------ATATGG--AGAACCTTAAT-TTTGTTTTTAT-----TTTGGAAG---GGGAATAAC-TCC-TGTAAATGGAT--GAA
gi|111148 : ATTTACACCTAAC------------GTTAC--TTCTGAAAA-G--TA----TA-------TATATCTATATGATGCACATA-TG------AAACT-AGAAT-ATCTC--A---GT-----------ATATGT-GCAGAG--T-----TTGTTTCTAT-----TTTGAAAAAGGG-GCATAAC-TCT-TGTAAAT
gi|111149 : AT--TTCCGAAAG-A-ACAATAATG-------TAAACAT-T--------TGTGCTA------AATTT-ACGTTTATTGTTTAC--GA-----------ATA-GT-TGCGTC--TGGT-TTTCTTAATGTCAGAAGTTGATAAGAA-TG--TAAT-TGTATATAAAAGG-----AAAG-AA-A-CTGTA-A-GCTGG---ACTTTGGTTTCTTATTTTAA-A--TAT-T-C-A-----------GA-C--ATAA-----AA----T-A--CA----GT-AG-AACTTCGATGTCTCGGACCAGACGGAACTGGACAAAATAG
gi|111150 : AT--------TATG-TA------AAGTT-ATATT-ACCGT--A---GC-----------ATATGT-TAAGAC--TGTT-TTTGTTCCTGT-----GTTGAAAAAAAGTGCATAAC-ACT-TGTAAATGGTT--GAA
gi|111150 : aacaacaacataCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTTAAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CT----GT-AG-AACTTCGATGGATCGAACCCGTCAGGACTGAACAAAATAGaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcctgagttgtatcggaatgatagaacttatttaaagtatataaagatgaatactgtagaacttcgatggatcgaacccgtcaggactgaacaaaatag
gi|111151 : aacaacaacataattatgtaaagttatattaccgtagcatatgttaagactgtttttgttcctgtgttgaaaaaaagtgcataacacttgtaaatggttgaaaaacattatatttggcagatcttcgacagcaagtgcaaatcatatatcaatttcTTAT--------TATG-TA------AAGTT-ACATT-ACCAT--A---GC-----------ATATGT-TAAGAC--TATT-TTTGTTCCTGT-----GTTG-AAAAAAGTGCATAAT-TCT-TGTAAATGATT--GAA
gi|111151 : AAGTGTAAAACATAT-AATAATTTCCT--GAGTT-GT-A-TCGGA-ATGATAG---AA--------CTTATTCTAA-G--TAT-A-T-A-----------AA-G--ATGA-----A-----T-A--CA----GT-AC-AACTTCGATGGATCGAACCAAACGGGACTGAACAAAATAGaaacattatatttggcagatcttcaacagcaagtgtaaaacatataataatttcctgagttgtatcggaatgatagaacttattctaagtatataaagatgaatacagtacaacttcgatggatcgaaccaaacgggactgaacaaaatag
gi|111153 : ttattatgtaaagttacattaccatagcatatgttaagactatttttgttcctgtgttgaaaaaagtgcataattcttgtaaatgattgaaaaacattatatttggcagatcttcaacagcAAACGCACATATA-TTT-TATAAATTGT----AATGCAG-A-T---A-ATAA-AC---AA--------CACATGCCAA----TAT-A-T-A------------------T-------A-----T-T--CA----GT-AT-AACTTCGATGGCTCGAACCCGAGGGGACTGGACAAAATAG
gi|111154 : CT-TGAAAAGGGGT--GAA----A-A-T---G-ATGTTAA---AAAG------CATAT---AA-A--AAA-A-A-A-----------AA-G--AT-------A-----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111155 : T--GAATA-AA-ACTC----ATCATAA---A----------TTGTTAAAACA--CAT-A-TTA-----------AA-G--A-GA-----AGAAAGT-A--CA----GT-AG-AACTTCAATAGCTCGAACCTGATGGGACTGGACAAAACAG
gi|111158 : TAATGG---AA--------CATATT--------TAT-A-TTA-----------AA-C--AT-------A-----T-G--CA----GT-AG-AACTTTGATGACTTGAACCTGACAGGACTGGACAAAACAG
gi|111159 : ATCG---AA--------CACATTCCAA-G--TAT-A-TCATGATTTAGAACAA-A--ATGT-----A-----T-A--CA----GA-AG-ATCTTTGATGACTCGAACCCGACAGGACTGGACAAAATAG
gi|111160 : ATAGCGTAA--------CTTGTGCAGA-GCCTGT-A-T-A-----------TA-T--GTAC-----A-----T-A--CA----GT-AA-AACTTCGATAGCTCGAACCCGGCGGGACTGGACAAA
gi|111162 : AG---AG--------TTTATTTC------TCT-G-T-A-----------AG-G--AT---------------A--CA----GT-AG-AACTTCGACAACTCGAACCCGATGGGACTGGACAAAATAG
gi|111164 : ---AA--------CTTATTTTGG-G--CAT-T-T-T-----------CA-A--GCAA-----C-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111165 : A--------TTTAT--CAA-A--TAG-A-C-A-----------TA-G--AC-------A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACGCGACGGGACTGGACAAAATAG
gi|111166 : A--------CTTTATCTAATG--TAT-AGT-A-----------AC-A--TTCA-----A-----T-AGACA----GT-AG-AACTTCGATGGCTCGAACTCGACGGGACTGGGCATAATAG
gi|111169 : TTCCAA-A--GAT---T-A-----------AA-G---TAA-----G-----T-A--CA----GT-AG-AACCTTGATGGTTCGAACTTGACAGAGCTTGACAAAATA
gi|111170 : CAC-G--TGTGA-T-A-----------AA-ACTATGA-----AA----T-A--CA----GT-AG-AACTTCGATGGCTCGGACCCGACGGGACTGGACAAAATA
gi|111172 : AA-G--TAT-A-T-A-----------TA-T--AT-------A-----T-A--CA----GT-AG-AACTTCTATGGTTCAAACTTAACAGGACTGGACAAAATAG
gi|111174 : -G--TAT-A-T-A-----------AT-T--ATG------------T-A--CT----GT-AGTAACCTCGATGGCTCGAACCCGACGAGACTTAACAAAATAG
gi|111177 : --TGT-A-T-A-----------AT-T--AT-------A-----T-A--CA----GT-AG-AACTTCGATAGCTTGAACCTGACGGGACTGAACAAAATAG
gi|111178 : --TAT-A-C-A-----------AACA--ATG------------T-A--CA----GT-GG-AACTTCGATGGCTTGAACCTGACGGGACTGGACAAAACAG
gi|111180 : --TAT-A-T-A-----------TA-T--ATAT-----A-----T-A--CA----GT-AG-ATTTTTGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111181 : --TAT-A-T-A-----------AA-T--ATCATCCAGG-----T-A--CA----GA-AG-AACTTTGATGGTTCGAACACGACGGGACTGGGCAAAATAG
gi|111182 : AT-A-T-A-----------CG-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCGTTGGCTCGAACTCGACAGGATTGAACAAAATAG
gi|111183 : AT-A-C-G-----------AA-T--ATGT-----G-----T-A--CA----GT-AG-AATTTTAATGGCTCGAACCCGACGGGACTGGACAAA
gi|111184 : AT-A-C-A-----------AA-ACTATAT-----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGACTGGTCAA
gi|111185 : AC-A-T-A-----------AA-G--CT-------A-----T-A--CA----GT-AG-AACTTTGTTCGCTCGAACTCGATGAGACTGGACAAAATAG
gi|111188 : T-G-T-A-----------AA-C--ATAT-----A-----T-A--CA----GT-AG-AACTTCTATAGTTCGAACCCGACCGGACTGGGCAAAATAG
gi|111189 : T-A-T-A-----------TA-T--ACAA-----A-----T-A--AA----GT-AG-AACTTTGATAATTTGAACCCGACGGGACTGGGCAAAATAG
gi|111191 : -A-T-A-----------AATG--TTGACAT--A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGATGGGAATGGACAAACTAG
gi|111192 : -A-T-A-----------GA-A--ATCAT----A-----T----CA----GT-AG-AACTTCAATGGATTGAACTCGACGGGACTCGACAAAATAG
gi|111199 : -----------AA-A--ATGATTAT-A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACTGGAGGGGACTGGACAAAATAG
gi|111201 : A-A--ATAA-----A-----T-A--CATACCGT-AG-AACTTCGATGGCTCGAACCCGACAGAACTGGACAAAAT
gi|111202 : A-A--ATAA-----A-----TTA--AA----GT-AG-ACCTTCTATGGATCGAACATGACGGGACTGAACAAAATAG
gi|111203 : -G--AT-A-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCAACGAGACTGG---AAATAG
gi|111204 : --ATCA-----A-----T-A--CA----GC-GG-AACTTCGATTGCTCGAACACGACGGGGCTGTACAAAATAG
gi|111208 : TGAT----A-----T-A--TA----GT-AG-AACTTTGATGGCCCAAACCCGACAAAACTGGACAAAATAG
gi|111209 : TAA-----A-----T-A--CA----GT-AG-AACTTCAATGGCTCGAACCCGACAGGACTGGACAAAATAG
gi|111210 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCCGACGGGACTGGACAAAA
gi|111211 : TAA-----A-----T-A--CA----GT-AG-GACTTGGATGGTTCAAACCCGACGGGACTGTACAAACTAG
gi|111212 : TAA-----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACCTGGCGGGACTGGTCCAAATAG
gi|111213 : TAA-----A-----G-A--CA----GT-AG-AACTTCGATGGCTCGAACCTGACATGATTAGACAAAATAG
gi|111214 : TGA-----A-----T-A--CA-----------ACTTCGGTGGCTCGAACCCGACGGGATTGGACAAAACAG
gi|111217 : A-----G-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111219 : A-----A-----T-A--CA----GT-AG-AACTTCGCTCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111220 : A-----A-----T-A--CA----GT-AG-AACTTCGATCGCTCGAACTCGACGGGACTGGTCAAAATAG
gi|111221 : A-----A-----T-A--CC----GT-AG-AACTTCGATGACTCGAACCCAACAGGACTGGACAAAATAG
gi|111222 : A-----A-----T-A--CA----GC-AG-AACTTCGATGGCTCGAACCTGACAAGACTGGACACAATAG
gi|111223 : A-----G-----T-A--CA----GT-AG-AACTTCAATGGCTCAAACCTGACGTGACTGGACAAAATAG
gi|111224 : A-----A-----T-A--CA----GT-AG-AACTTTGATCGCTCAAACTCAACGGGACTGGACAAAATAG
gi|111225 : A-----A-----T-A--TA----GT-A--AACTTCGATGGCTCGAACACGGCGGGACTGAACAAAATGG
gi|111226 : A-----A-----C-A--CA----GT-AG-AACTTCGATGACTCTAACCCGACGGGACTTGACAAAACAG
gi|111227 : A-----A-----T-A--CA----GT-AG-AACTTCGATAGATTGAATCGGACGGGACATGACAAAACAG
gi|111231 : -----A-----T-A--CA----GT-AA-AACTTCGATGGCTCGAACCCGACGAGACTGGATAAAATAG
gi|111232 : -----A-----T-A--CA----GT-AG-AACTTCGATGGATCGAACCTGACGGGACTGAACAAAAT
gi|111233 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCGACGGGACTGGACAAAATAG
gi|111234 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTTGACGGGACTGGACAAAATAG
gi|111235 : -----A-----T-A--CA----GT-AG-ATCTTCAATAGATCGAACCCGACGGGACTGGACAAAATAG
gi|111236 : -----A-----T-A--CA----GT-AG-AATTTCGATGATTCGAATCCGACGGGACTGGACAAAATAG
gi|111237 : -----A-----T-A--TA----GT-AG-AACTTCAATGGCTCGAACCCGACGGGACTGCACAAAATA
gi|111238 : -----A-----T-G--CA----GT-AG-AACTCCGATGGCTCGAACCCAACGGGACTGGATAAAATAG
gi|111240 : -----A-----T-A--CA----GT-CG-AACTTTGATGGCTCGAACCCGACGGGACTGGACAAAAAAG
gi|111241 : -----A-----T-A--CA----GT-AG-AACTTCGATAGCTCGAACTCGACGGGACAGGACAAAATA
gi|111242 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTCGAATCCGACGGGATGGGACGAAATAG
gi|111243 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCTTGAATCTGACAGAACTGGACAAAATAG
gi|111244 : -----A-----T-A--CA----GT-AG-AACTTAGATGGATCGAACCCGAGGGGACTGGGAAAAGTAG
gi|111246 : -----A-----T-A--CA----GT-AG-AAGTTTGATGGCTTGAACCCGATGGGACTGGACAAAACAG
gi|111247 : -----A-----T-A--TA----G--AG-AACTTCGATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111248 : -----A-----T-A--CA----GT-AG-AACTTCGATGGCACAAAACTGATGGGACTGGACAAAATAG
gi|111249 : -----A-----T-A--CA----GT-AG-AACTTCAATCCCTCGAACACGACGGGATTGGACAAAATAG
gi|111250 : -----A-----T-A--CA----GT-AG-AACTTTGATGGCTCGAACCCGACGGGAC
gi|111251 : -----A-----T-A--CA----GT-AG-AGCTTCGATGGCTCGAACCCGACAGGGCTGTAAAAACTAG
gi|111252 : -----A-----T-A--CA----GT-AG-AACCTCGATGGCTCGAAACCTGTGGGACTGTACAAAATAG
gi|111253 : -----A-----T-T--CA----GT-AG-AACTTCGATGGCTCGAACCCGGAAGGACTGAACCAAAT
gi|111254 : -----A-----T-A--CA----GTGAG-AACTTCGATGGCTCGAACCCGAAAGAACTGGACAAATTAG
gi|111255 : -----A-----T-A--CA----GT-AG-CACTTCGATGGTTTAAACCCGACGGGACTTGACAATATAG
gi|111267 : -----T-A--CA----GT-AG-AACTTCAATCGCTCGAACTCGACGGGACTGGACAAAATAG
gi|111268 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACTCGACGGTACTGGACAAAAT
gi|111269 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACTCTACGGAACTGAACAAAATAG
gi|111270 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACACGACGGGACTGCACAACATAG
gi|111271 : -----T-A--CA----GT-AG-AACTTCGATGACTCGAACCCGTCGGGACTGTACCAAATA
gi|111272 : -----T-A--CA----GT-AG-AACTCCGATGGCTCGAACCTGATTGGACTGGACAAAATAG
gi|111273 : -----T-A--CA----GT-AG-AACTTTGATAGCTCAAACCCGACGGGACTGGACAAGTTAG
gi|111274 : -----T-A--CA----GT-AG-AACTTCGATGGCTCAAACAAGACTGGACTGGACAAAATAG
gi|111276 : -----T-A--CA----GT-AG-AACTTCAATGGCTCGAACACGACGGGACTGGACGA
gi|111277 : -----T-A--CA----GT-AG-AACTTCGATGGCTCGAACCCTACGCGACTTGACAAATTAG
gi|111286 : -A--CA----GT-AG-AACTTTGATGGCTCGAACACGGCAGGACTGGACAAAATA
gi|111287 : -A--CA----GT-AG-AACTTTGATGACTCTAACCCGATGGGACTGGACAAAAT
gi|111291 : --CA----GT-AG-AACTTCAATGGCTCGAACCCTACGGGACTTTACAAAATAG