[2019-05-01 16:56:33,864] multiqc [DEBUG ] No MultiQC config found: /home/sam/.local/lib/python3.5/site-packages/multiqc-1.6-py3.5.egg/multiqc_config.yaml [2019-05-01 16:56:33,864] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2019-05-01 16:56:33,864] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2019-05-01 16:56:33,864] multiqc [DEBUG ] Command used: /usr/local/bin/multiqc . [2019-05-01 16:56:35,306] multiqc [WARNING] MultiQC Version v1.7 now available! [2019-05-01 16:56:35,306] multiqc [INFO ] This is MultiQC v1.6 [2019-05-01 16:56:35,306] multiqc [DEBUG ] Command : /usr/local/bin/multiqc . [2019-05-01 16:56:35,306] multiqc [DEBUG ] Working dir : /home/sam/analyses/20190501_cgig_fastqc_wgbs_roberto [2019-05-01 16:56:35,306] multiqc [INFO ] Template : default [2019-05-01 16:56:35,307] multiqc [INFO ] Searching '.' [2019-05-01 16:56:35,307] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, dedup, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, longranger, bbmap, bismark, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, clusterflow, bcl2fastq, interop [2019-05-01 16:56:35,307] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpqn7nz8q1 [2019-05-01 16:56:35,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1_001_fastqc.html [2019-05-01 16:56:35,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1_001_fastqc.html [2019-05-01 16:56:35,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R2_001_fastqc.html [2019-05-01 16:56:35,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R2_001_fastqc.html [2019-05-01 16:56:35,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R2_001_fastqc.html [2019-05-01 16:56:35,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R2_001_fastqc.html [2019-05-01 16:56:35,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1_001_fastqc.html [2019-05-01 16:56:35,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1_001_fastqc.html [2019-05-01 16:56:35,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R2_001_fastqc.html [2019-05-01 16:56:35,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R2_001_fastqc.html [2019-05-01 16:56:35,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R2_001_fastqc.html [2019-05-01 16:56:35,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R2_001_fastqc.html [2019-05-01 16:56:35,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1_001_fastqc.html [2019-05-01 16:56:35,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1_001_fastqc.html [2019-05-01 16:56:35,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1_001_fastqc.html [2019-05-01 16:56:35,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R2_001_fastqc.html [2019-05-01 16:56:35,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R2_001_fastqc.html [2019-05-01 16:56:35,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1_001_fastqc.html [2019-05-01 16:56:35,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1_001_fastqc.html [2019-05-01 16:56:35,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R2_001_fastqc.html [2019-05-01 16:56:35,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1_001_fastqc.html [2019-05-01 16:56:35,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1_001_fastqc.html [2019-05-01 16:56:35,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R2_001_fastqc.html [2019-05-01 16:56:35,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1_001_fastqc.html [2019-05-01 16:56:36,285] multiqc [DEBUG ] No samples found: custom_content [2019-05-01 16:56:36,310] multiqc [DEBUG ] No samples found: conpair [2019-05-01 16:56:36,318] multiqc [DEBUG ] No samples found: peddy [2019-05-01 16:56:36,331] multiqc [DEBUG ] No samples found: methylQA [2019-05-01 16:56:36,337] multiqc [DEBUG ] No samples found: qualimap [2019-05-01 16:56:36,341] multiqc [DEBUG ] No samples found: preseq [2019-05-01 16:56:36,345] multiqc [DEBUG ] No samples found: quast [2019-05-01 16:56:36,359] multiqc [DEBUG ] No samples found: qorts [2019-05-01 16:56:36,363] multiqc [DEBUG ] No samples found: rna_seqc [2019-05-01 16:56:36,372] multiqc [DEBUG ] No samples found: rsem [2019-05-01 16:56:36,380] multiqc [DEBUG ] No samples found: rseqc [2019-05-01 16:56:36,384] multiqc [DEBUG ] No samples found: busco [2019-05-01 16:56:36,388] multiqc [DEBUG ] No samples found: goleft_indexcov [2019-05-01 16:56:36,392] multiqc [DEBUG ] No samples found: disambiguate [2019-05-01 16:56:36,396] multiqc [DEBUG ] No samples found: supernova [2019-05-01 16:56:36,403] multiqc [DEBUG ] No samples found: deeptools [2019-05-01 16:56:36,407] multiqc [DEBUG ] No samples found: sargasso [2019-05-01 16:56:36,411] multiqc [DEBUG ] No samples found: verifybamid [2019-05-01 16:56:36,415] multiqc [DEBUG ] No samples found: mirtrace [2019-05-01 16:56:36,420] multiqc [DEBUG ] No samples found: happy [2019-05-01 16:56:36,424] multiqc [DEBUG ] No samples found: homer [2019-05-01 16:56:36,428] multiqc [DEBUG ] No samples found: macs2 [2019-05-01 16:56:36,433] multiqc [DEBUG ] No samples found: theta2 [2019-05-01 16:56:36,446] multiqc [DEBUG ] No samples found: snpeff [2019-05-01 16:56:36,452] multiqc [DEBUG ] No samples found: gatk [2019-05-01 16:56:36,456] multiqc [DEBUG ] No samples found: htseq [2019-05-01 16:56:36,460] multiqc [DEBUG ] No samples found: bcftools [2019-05-01 16:56:36,464] multiqc [DEBUG ] No samples found: featureCounts [2019-05-01 16:56:36,468] multiqc [DEBUG ] No samples found: dedup [2019-05-01 16:56:36,477] multiqc [DEBUG ] No samples found: picard [2019-05-01 16:56:36,481] multiqc [DEBUG ] No samples found: prokka [2019-05-01 16:56:36,485] multiqc [DEBUG ] No samples found: samblaster [2019-05-01 16:56:36,491] multiqc [DEBUG ] No samples found: samtools [2019-05-01 16:56:36,495] multiqc [DEBUG ] No samples found: bamtools [2019-05-01 16:56:36,499] multiqc [DEBUG ] No samples found: jellyfish [2019-05-01 16:56:36,505] multiqc [DEBUG ] No samples found: vcftools [2019-05-01 16:56:36,509] multiqc [DEBUG ] No samples found: longranger [2019-05-01 16:56:36,518] multiqc [DEBUG ] No samples found: bbmap [2019-05-01 16:56:36,522] multiqc [DEBUG ] No samples found: bismark [2019-05-01 16:56:36,526] multiqc [DEBUG ] No samples found: hicexplorer [2019-05-01 16:56:36,531] multiqc [DEBUG ] No samples found: hicup [2019-05-01 16:56:36,535] multiqc [DEBUG ] No samples found: hicpro [2019-05-01 16:56:36,539] multiqc [DEBUG ] No samples found: salmon [2019-05-01 16:56:36,543] multiqc [DEBUG ] No samples found: kallisto [2019-05-01 16:56:36,549] multiqc [DEBUG ] No samples found: slamdunk [2019-05-01 16:56:36,553] multiqc [DEBUG ] No samples found: star [2019-05-01 16:56:36,557] multiqc [DEBUG ] No samples found: hisat2 [2019-05-01 16:56:36,562] multiqc [DEBUG ] No samples found: tophat [2019-05-01 16:56:36,566] multiqc [DEBUG ] No samples found: bowtie2 [2019-05-01 16:56:36,570] multiqc [DEBUG ] No samples found: bowtie1 [2019-05-01 16:56:36,574] multiqc [DEBUG ] No samples found: kat [2019-05-01 16:56:36,578] multiqc [DEBUG ] No samples found: leehom [2019-05-01 16:56:36,582] multiqc [DEBUG ] No samples found: adapterRemoval [2019-05-01 16:56:36,587] multiqc [DEBUG ] No samples found: clipandmerge [2019-05-01 16:56:36,591] multiqc [DEBUG ] No samples found: cutadapt [2019-05-01 16:56:36,596] multiqc [DEBUG ] No samples found: flexbar [2019-05-01 16:56:36,600] multiqc [DEBUG ] No samples found: trimmomatic [2019-05-01 16:56:36,604] multiqc [DEBUG ] No samples found: skewer [2019-05-01 16:56:36,608] multiqc [DEBUG ] No samples found: sortmerna [2019-05-01 16:56:36,612] multiqc [DEBUG ] No samples found: biobloomtools [2019-05-01 16:56:36,616] multiqc [DEBUG ] No samples found: fastq_screen [2019-05-01 16:56:36,620] multiqc [DEBUG ] No samples found: afterqc [2019-05-01 16:56:36,625] multiqc [DEBUG ] No samples found: fastp [2019-05-01 16:56:40,935] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2019-05-01 16:56:41,727] multiqc [DEBUG ] No samples found: clusterflow [2019-05-01 16:56:41,731] multiqc [DEBUG ] No samples found: bcl2fastq [2019-05-01 16:56:41,735] multiqc [DEBUG ] No samples found: interop [2019-05-01 16:56:41,795] multiqc [INFO ] Compressing plot data [2019-05-01 16:56:42,315] multiqc [INFO ] Report : multiqc_report.html [2019-05-01 16:56:42,316] multiqc [INFO ] Data : multiqc_data [2019-05-01 16:56:42,329] multiqc [DEBUG ] Moving data file from '/tmp/tmpqn7nz8q1/multiqc_data/multiqc_general_stats.txt' to '/home/sam/analyses/20190501_cgig_fastqc_wgbs_roberto/multiqc_data' [2019-05-01 16:56:42,329] multiqc [DEBUG ] Moving data file from '/tmp/tmpqn7nz8q1/multiqc_data/multiqc_fastqc.txt' to '/home/sam/analyses/20190501_cgig_fastqc_wgbs_roberto/multiqc_data' [2019-05-01 16:56:42,329] multiqc [DEBUG ] Moving data file from '/tmp/tmpqn7nz8q1/multiqc_data/multiqc_sources.txt' to '/home/sam/analyses/20190501_cgig_fastqc_wgbs_roberto/multiqc_data' [2019-05-01 16:56:42,330] multiqc [DEBUG ] Moving data file from '/tmp/tmpqn7nz8q1/multiqc_data/multiqc_data.json' to '/home/sam/analyses/20190501_cgig_fastqc_wgbs_roberto/multiqc_data' [2019-05-01 16:56:42,581] multiqc [INFO ] MultiQC complete