#!/usr/bin/env bash

/home/sam/programs/fastqc_v0.11.8/fastqc \
--threads 16 \
--outdir /home/sam/analyses/20190415_cgig_fastqc_wgbs_roberto \
/mnt/owl/nightingales/C_gigas/0501_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/0501_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/0502_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/0502_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/0503_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/0503_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/3501_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/3501_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/3502_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/3502_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/3503_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/3503_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5201_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5201_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5202_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5202_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5203_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5203_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5901_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5901_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5902_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5902_R2_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5903_R1_001.fastq.gz \
/mnt/owl/nightingales/C_gigas/5903_R2_001.fastq.gz