/gannet/Atumefaciens/20190409_trinity_pgen_EPI99_RNAseq

De novo transcriptome assembly of Panopea generosa (geoduck) Day 5 larvae HiSeq/NovaSeq data.

Assembled with Trinity, run on Mox.

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FILES

- 20190409_trinity_pgen_EPI99_RNAseq.sh: SBATCH script for running Trinity assembly on Mox.

- assembly_stats.txt: Trinity output with assembly summary.

- fastq.list.txt: List of input FastQ files used for assembly.

- slurm-740541.out: SLURM output file (stderr/stdout).

- system_path.log: List of Sam's Mox systme $PATH contents.

- trinity_out_dir: Directory created by Trinity during assembly.

- trinity_out_dir/Trinity.fasta: De novo assembly.

- trinity_out_dir/Trinity.fasta.fai: FastA index file.


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Notebook:

https://robertslab.github.io/sams-notebook/2019/04/09/Transcriptome-Assembly-Geoduck-Tissue-specific-Assembly-Larvae-Day5-EPI99-with-HiSeq-and-NovaSeq-Data-on-Mox.html