/gannet/Atumefaciens/20190409_trinity_pgen_EPI116_RNAseq

De novo transcriptome assembly of Panopea generosa (geoduck) juvenile "super low OA" HiSeq/NovaSeq data.

Assembled with Trinity, run on Mox.

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FILES

- 20190409_trinity_pgen_EPI116_RNAseq.sh: SBATCH script for running Trinity assembly on Mox.

- assembly_stats.txt: Trinity output with assembly summary.

- fastq.list.txt: List of input FastQ files used for assembly.

- slurm-735495.out: SLURM output file (stderr/stdout).

- system_path.log: List of Sam's Mox system $PATH contents.

- trinity_out_dir: Directory created by Trinity during assembly.

- trinity_out_dir/Trinity.fasta: De novo assembly.

- trinity_out_dir/Trinity.fasta.fai: FastA index file.


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Notebook:

https://robertslab.github.io/sams-notebook/2019/04/09/Transcriptome-Assembly-Geoduck-Tissue-specific-Assembly-Juvenile-Super-Low-OA-EPI116-with-HiSeq-Data-on-Mox.html