/gannet/Atumefaciens/20190408_metagenomics_pgen_quast_comparison

Use Quast to compare two metagenomic assemblies from geoduck water samples:

- Sam's assembly

- Emma's assembly

See notebook for all the details.

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FILES

All folders/files outlined below are the defaults generated by Quast.

"report.html" is probably the easiest way to view the data - can be opened in a browser.

└── quast_results
    ├── latest -> results_2019_04_08_09_47_17
    └── results_2019_04_08_09_47_17
        ├── basic_stats
        │   ├── cumulative_plot.pdf
        │   ├── ets_GC_content_plot.pdf
        │   ├── GC_content_plot.pdf
        │   ├── Nx_plot.pdf
        │   └── sjw_GC_content_plot.pdf
        ├── icarus.html
        ├── icarus_viewers
        │   └── contig_size_viewer.html
        ├── quast.log
        ├── report.html
        ├── report.pdf
        ├── report.tex
        ├── report.tsv
        ├── report.txt
        ├── transposed_report.tex
        ├── transposed_report.tsv
        └── transposed_report.txt


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Notebook:

https://robertslab.github.io/sams-notebook/2019/04/08/Metagenomics-P.generosa-Water-Sample-Assemlby-Comparisons-with-Quast.html