All statistics are based on contigs of size >= 100 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly MG1_ets MG1_sjw MG2_ets MG2_sjw MG3_ets MG3_sjw MG5_ets MG5_sjw MG6_ets MG6_sjw MG7_ets MG7_sjw # contigs (>= 1000 bp) 40 536 5 50 3 40 6 33 257 1098 189 1149 # contigs (>= 5000 bp) 0 26 0 17 0 21 0 15 1 54 0 64 # contigs (>= 10000 bp) 0 16 0 9 0 12 0 6 0 24 0 14 # contigs (>= 25000 bp) 0 8 0 2 0 9 0 3 0 15 0 7 # contigs (>= 50000 bp) 0 5 0 1 0 8 0 1 0 8 0 3 Total length (>= 1000 bp) 50044 1595365 6348 354708 3419 1593644 8174 360062 345468 4036596 242361 3273332 Total length (>= 5000 bp) 0 826620 0 277972 0 1552531 0 313743 7097 2014335 0 1166823 Total length (>= 10000 bp) 0 756284 0 226220 0 1488784 0 249923 0 1821840 0 855410 Total length (>= 25000 bp) 0 608355 0 121563 0 1432671 0 193444 0 1667565 0 739472 Total length (>= 50000 bp) 0 519815 0 95422 0 1383745 0 120673 0 1435118 0 619122 # contigs 2410 3095 285 854 205 614 35 84 3822 2702 3715 2629 Largest contig 1815 200099 1930 95422 1204 524098 1700 120673 7097 571027 2655 382744 Total length 1119475 2978418 114225 698991 80147 1831669 22502 387541 2124693 4973902 1984618 4121680 Reference length 3576081 3576081 3576081 3576081 3576081 3576081 3576081 3576081 3576081 3576081 3576081 3576081 GC (%) 51.92 48.72 50.99 46.74 50.90 39.17 47.53 43.98 51.76 50.53 51.83 50.93 Reference GC (%) 51.82 51.82 51.82 51.82 51.82 51.82 51.82 51.82 51.82 51.82 51.82 51.82 N50 458 1099 377 1221 375 402984 815 24104 575 3117 547 2310 NG50 - 856 - - - 331 - - 372 16570 340 2887 N75 369 606 334 424 327 53296 416 7192 419 1272 411 1147 NG75 - 420 - - - - - - - 2650 - 1565 L50 884 435 114 46 84 2 10 4 1235 178 1251 343 LG50 - 747 - - - 476 - - 2817 22 3100 237 L75 1566 1374 195 355 141 8 19 11 2325 828 2300 980 LG75 - 2262 - - - - - - - 246 - 673 # misassemblies 3 13 1 3 1 0 0 0 5 18 6 21 # misassembled contigs 3 13 1 3 1 0 0 0 5 18 6 21 Misassembled contigs length 1221 13999 446 1304 434 0 0 0 4074 34454 3869 61627 # local misassemblies 0 9 0 0 0 2 0 0 1 8 3 13 # scaffold gap ext. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # scaffold gap loc. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # unaligned mis. contigs 0 19 0 8 2 9 2 5 2 17 3 11 # unaligned contigs 7 + 16 part 17 + 127 part 2 + 9 part 8 + 60 part 3 + 6 part 6 + 45 part 1 + 11 part 8 + 42 part 6 + 24 part 11 + 155 part 7 + 15 part 16 + 140 part Unaligned length 17588 988504 9551 361603 6010 1595141 12079 368429 29307 2084032 16105 1105018 Genome fraction (%) 28.943 52.574 2.508 8.559 1.787 5.995 0.099 0.182 53.800 75.562 51.032 78.280 Duplication ratio 1.065 1.058 1.167 1.102 1.160 1.103 2.953 2.941 1.089 1.069 1.079 1.078 # N's per 100 kbp 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 # mismatches per 100 kbp 2018.67 2241.66 1979.24 2028.95 2152.00 2196.09 3966.01 3508.77 2053.66 2319.34 2009.69 2327.87 # indels per 100 kbp 14.40 16.70 12.27 14.05 9.39 11.20 0.00 61.56 12.06 18.84 11.45 18.86 Largest alignment 1720 5104 704 1021 659 1325 310 417 2721 8916 2646 8390 Total aligned length 1042694 1918985 90862 312982 64606 220820 5000 10440 1965614 2813855 1857703 2942237 NA50 428 461 328 - 323 - - - 522 534 506 1041 NGA50 - 333 - - - - - - 316 1112 290 1299 NA75 334 - 244 - 211 - - - 363 - 362 - NGA75 - - - - - - - - - 382 - 496 LA50 947 1790 145 - 104 - - - 1328 1746 1329 975 LGA50 - 2545 - - - - - - 3128 852 3409 741 LA75 1689 - 240 - 171 - - - 2553 - 2490 - LGA75 - - - - - - - - - 2177 - 1823