All statistics are based on contigs of size >= 100 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly MG1_ets MG1_sjw MG2_ets MG2_sjw MG3_ets MG3_sjw MG5_ets MG5_sjw MG6_ets MG6_sjw MG7_ets MG7_sjw # contigs (>= 1000 bp) 542 663 397 488 401 322 292 319 534 769 415 655 # contigs (>= 5000 bp) 11 83 0 84 0 83 0 83 4 65 1 81 # contigs (>= 10000 bp) 0 27 0 24 0 33 0 33 0 17 0 23 # contigs (>= 25000 bp) 0 2 0 6 0 9 0 6 0 4 0 2 # contigs (>= 50000 bp) 0 0 0 2 0 3 0 1 0 1 0 0 Total length (>= 1000 bp) 996201 2038357 582463 1877646 585212 2171055 413764 1604295 905583 2131711 652097 1959462 Total length (>= 5000 bp) 67759 811937 0 990003 0 1621622 0 1063076 25153 674804 5030 787585 Total length (>= 10000 bp) 0 442994 0 570997 0 1251120 0 702299 0 371764 0 390531 Total length (>= 25000 bp) 0 78286 0 306988 0 888053 0 298067 0 184026 0 63722 Total length (>= 50000 bp) 0 0 0 180988 0 687555 0 94911 0 84933 0 0 # contigs 2333 2520 2321 1647 2136 1055 2111 751 2535 3131 2328 2276 Largest contig 7853 43497 4361 122265 4052 516683 3373 94911 7733 84933 5030 37343 Total length 1918817 2927725 1608131 2451480 1541528 2521786 1395509 1806777 1939046 3207999 1665161 2731850 Reference length 1967776 1967776 1967776 1967776 1967776 1967776 1967776 1967776 1967776 1967776 1967776 1967776 GC (%) 37.02 37.38 37.43 38.14 37.40 42.49 37.36 38.25 37.15 37.41 37.17 37.34 Reference GC (%) 36.69 36.69 36.69 36.69 36.69 36.69 36.69 36.69 36.69 36.69 36.69 36.69 N50 1045 2219 789 3448 819 9999 729 7172 935 1880 825 2243 NG50 1018 4253 653 5013 661 19348 534 6024 915 3592 698 3781 N75 567 781 509 1118 534 2642 493 2495 534 675 516 881 NG75 537 2190 358 2430 342 7263 - 1774 521 2157 381 1969 L50 507 280 650 142 607 34 629 57 601 381 615 258 LG50 530 121 900 83 898 14 1090 69 616 139 814 126 L75 1130 844 1287 452 1187 156 1212 166 1296 1107 1257 751 LG75 1197 286 1917 229 1930 60 - 223 1336 318 1770 310 # misassemblies 4 14 1 10 3 7 6 5 5 16 4 11 # misassembled contigs 4 13 1 9 3 7 6 5 5 15 4 10 Misassembled contigs length 3754 57483 1048 34673 2521 100984 5845 49958 5259 20836 2291 34007 # local misassemblies 3 15 1 7 2 6 0 4 1 6 0 10 # scaffold gap ext. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # scaffold gap loc. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # unaligned mis. contigs 0 13 0 8 0 9 0 4 1 17 1 9 # unaligned contigs 2 + 27 part 10 + 123 part 1 + 14 part 10 + 73 part 1 + 6 part 5 + 47 part 1 + 7 part 3 + 41 part 4 + 19 part 16 + 136 part 3 + 8 part 19 + 112 part Unaligned length 31100 406846 10671 420470 8868 811923 8009 353208 20727 505896 8896 354860 Genome fraction (%) 76.343 81.881 69.521 75.525 68.751 70.922 63.062 65.537 74.981 81.829 71.020 80.245 Duplication ratio 1.257 1.565 1.168 1.367 1.133 1.225 1.118 1.127 1.300 1.678 1.185 1.506 # N's per 100 kbp 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 # mismatches per 100 kbp 1697.26 2399.33 1473.92 2182.80 1479.94 2028.35 1400.58 1840.24 1698.52 2569.66 1558.52 2318.98 # indels per 100 kbp 15.38 22.59 13.09 22.81 11.83 18.78 10.56 17.76 13.69 25.96 12.67 22.04 Largest alignment 7851 21617 4290 25499 4025 37889 3373 41962 7657 27640 4881 22331 Total aligned length 1828972 2493877 1507198 2015384 1455243 1697426 1304918 1440402 1832704 2671641 1575131 2352570 NA50 965 1330 717 1823 759 1586 665 3470 855 999 762 1493 NGA50 948 2646 579 2923 600 3828 458 2732 840 2251 634 2597 NA75 490 395 435 402 469 - 424 418 454 344 448 417 NGA75 459 1309 278 961 - 569 - - 440 1194 323 1211 LA50 534 444 691 269 643 225 671 113 634 658 643 378 LGA50 559 187 969 165 959 109 1186 140 651 241 860 181 LA75 1230 1535 1410 1078 1285 - 1328 474 1420 2158 1358 1291 LGA75 1307 453 2179 460 - 464 - - 1468 541 1959 460