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\begin{table}[ht]
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\caption{All statistics are based on contigs of size $\geq$ 100 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
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\hline
Assembly & MG1\_ets & MG1\_sjw & MG2\_ets & MG2\_sjw & MG3\_ets & MG3\_sjw & MG5\_ets & MG5\_sjw & MG6\_ets & MG6\_sjw & MG7\_ets & MG7\_sjw \\ \hline
\# contigs ($\geq$ 1000 bp) & 542 & 663 & 397 & 488 & 401 & 322 & 292 & 319 & 534 & 769 & 415 & 655 \\ \hline
\# contigs ($\geq$ 5000 bp) & 11 & 83 & 0 & 84 & 0 & 83 & 0 & 83 & 4 & 65 & 1 & 81 \\ \hline
\# contigs ($\geq$ 10000 bp) & 0 & 27 & 0 & 24 & 0 & 33 & 0 & 33 & 0 & 17 & 0 & 23 \\ \hline
\# contigs ($\geq$ 25000 bp) & 0 & 2 & 0 & 6 & 0 & 9 & 0 & 6 & 0 & 4 & 0 & 2 \\ \hline
\# contigs ($\geq$ 50000 bp) & 0 & 0 & 0 & 2 & 0 & 3 & 0 & 1 & 0 & 1 & 0 & 0 \\ \hline
Total length ($\geq$ 1000 bp) & 996201 & 2038357 & 582463 & 1877646 & 585212 & {\bf 2171055} & 413764 & 1604295 & 905583 & 2131711 & 652097 & 1959462 \\ \hline
Total length ($\geq$ 5000 bp) & 67759 & 811937 & 0 & 990003 & 0 & {\bf 1621622} & 0 & 1063076 & 25153 & 674804 & 5030 & 787585 \\ \hline
Total length ($\geq$ 10000 bp) & 0 & 442994 & 0 & 570997 & 0 & {\bf 1251120} & 0 & 702299 & 0 & 371764 & 0 & 390531 \\ \hline
Total length ($\geq$ 25000 bp) & 0 & 78286 & 0 & 306988 & 0 & {\bf 888053} & 0 & 298067 & 0 & 184026 & 0 & 63722 \\ \hline
Total length ($\geq$ 50000 bp) & 0 & 0 & 0 & 180988 & 0 & {\bf 687555} & 0 & 94911 & 0 & 84933 & 0 & 0 \\ \hline
\# contigs & 2333 & 2520 & 2321 & 1647 & 2136 & 1055 & 2111 & 751 & 2535 & 3131 & 2328 & 2276 \\ \hline
Largest contig & 7853 & 43497 & 4361 & 122265 & 4052 & {\bf 516683} & 3373 & 94911 & 7733 & 84933 & 5030 & 37343 \\ \hline
Total length & 1918817 & 2927725 & 1608131 & 2451480 & 1541528 & 2521786 & 1395509 & 1806777 & 1939046 & {\bf 3207999} & 1665161 & 2731850 \\ \hline
Reference length & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 & 1967776 \\ \hline
GC (\%) & 37.02 & 37.38 & 37.43 & 38.14 & 37.40 & 42.49 & 37.36 & 38.25 & 37.15 & 37.41 & 37.17 & 37.34 \\ \hline
Reference GC (\%) & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 & 36.69 \\ \hline
N50 & 1045 & 2219 & 789 & 3448 & 819 & {\bf 9999} & 729 & 7172 & 935 & 1880 & 825 & 2243 \\ \hline
NG50 & 1018 & 4253 & 653 & 5013 & 661 & {\bf 19348} & 534 & 6024 & 915 & 3592 & 698 & 3781 \\ \hline
N75 & 567 & 781 & 509 & 1118 & 534 & {\bf 2642} & 493 & 2495 & 534 & 675 & 516 & 881 \\ \hline
NG75 & 537 & 2190 & 358 & 2430 & 342 & {\bf 7263} & - & 1774 & 521 & 2157 & 381 & 1969 \\ \hline
L50 & 507 & 280 & 650 & 142 & 607 & {\bf 34} & 629 & 57 & 601 & 381 & 615 & 258 \\ \hline
LG50 & 530 & 121 & 900 & 83 & 898 & {\bf 14} & 1090 & 69 & 616 & 139 & 814 & 126 \\ \hline
L75 & 1130 & 844 & 1287 & 452 & 1187 & {\bf 156} & 1212 & 166 & 1296 & 1107 & 1257 & 751 \\ \hline
LG75 & 1197 & 286 & 1917 & 229 & 1930 & {\bf 60} & - & 223 & 1336 & 318 & 1770 & 310 \\ \hline
\# misassemblies & 4 & 14 & {\bf 1} & 10 & 3 & 7 & 6 & 5 & 5 & 16 & 4 & 11 \\ \hline
\# misassembled contigs & 4 & 13 & {\bf 1} & 9 & 3 & 7 & 6 & 5 & 5 & 15 & 4 & 10 \\ \hline
Misassembled contigs length & 3754 & 57483 & {\bf 1048} & 34673 & 2521 & 100984 & 5845 & 49958 & 5259 & 20836 & 2291 & 34007 \\ \hline
\# local misassemblies & 3 & 15 & 1 & 7 & 2 & 6 & {\bf 0} & 4 & 1 & 6 & {\bf 0} & 10 \\ \hline
\# scaffold gap ext. mis. & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 \\ \hline
\# scaffold gap loc. mis. & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 \\ \hline
\# unaligned mis. contigs & {\bf 0} & 13 & {\bf 0} & 8 & {\bf 0} & 9 & {\bf 0} & 4 & 1 & 17 & 1 & 9 \\ \hline
\# unaligned contigs & 2 + 27 part & 10 + 123 part & 1 + 14 part & 10 + 73 part & {\bf 1 + 6 part} & 5 + 47 part & 1 + 7 part & 3 + 41 part & 4 + 19 part & 16 + 136 part & 3 + 8 part & 19 + 112 part \\ \hline
Unaligned length & 31100 & 406846 & 10671 & 420470 & 8868 & 811923 & {\bf 8009} & 353208 & 20727 & 505896 & 8896 & 354860 \\ \hline
Genome fraction (\%) & 76.343 & {\bf 81.881} & 69.521 & 75.525 & 68.751 & 70.922 & 63.062 & 65.537 & 74.981 & 81.829 & 71.020 & 80.245 \\ \hline
Duplication ratio & 1.257 & 1.565 & 1.168 & 1.367 & 1.133 & 1.225 & {\bf 1.118} & 1.127 & 1.300 & 1.678 & 1.185 & 1.506 \\ \hline
\# N's per 100 kbp & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 & 0.00 \\ \hline
\# mismatches per 100 kbp & 1697.26 & 2399.33 & 1473.92 & 2182.80 & 1479.94 & 2028.35 & {\bf 1400.58} & 1840.24 & 1698.52 & 2569.66 & 1558.52 & 2318.98 \\ \hline
\# indels per 100 kbp & 15.38 & 22.59 & 13.09 & 22.81 & 11.83 & 18.78 & {\bf 10.56} & 17.76 & 13.69 & 25.96 & 12.67 & 22.04 \\ \hline
Largest alignment & 7851 & 21617 & 4290 & 25499 & 4025 & 37889 & 3373 & {\bf 41962} & 7657 & 27640 & 4881 & 22331 \\ \hline
Total aligned length & 1828972 & 2493877 & 1507198 & 2015384 & 1455243 & 1697426 & 1304918 & 1440402 & 1832704 & {\bf 2671641} & 1575131 & 2352570 \\ \hline
NA50 & 965 & 1330 & 717 & 1823 & 759 & 1586 & 665 & {\bf 3470} & 855 & 999 & 762 & 1493 \\ \hline
NGA50 & 948 & 2646 & 579 & 2923 & 600 & {\bf 3828} & 458 & 2732 & 840 & 2251 & 634 & 2597 \\ \hline
NA75 & {\bf 490} & 395 & 435 & 402 & 469 & - & 424 & 418 & 454 & 344 & 448 & 417 \\ \hline
NGA75 & 459 & {\bf 1309} & 278 & 961 & - & 569 & - & - & 440 & 1194 & 323 & 1211 \\ \hline
LA50 & 534 & 444 & 691 & 269 & 643 & 225 & 671 & {\bf 113} & 634 & 658 & 643 & 378 \\ \hline
LGA50 & 559 & 187 & 969 & 165 & 959 & {\bf 109} & 1186 & 140 & 651 & 241 & 860 & 181 \\ \hline
LA75 & 1230 & 1535 & 1410 & 1078 & 1285 & - & 1328 & {\bf 474} & 1420 & 2158 & 1358 & 1291 \\ \hline
LGA75 & 1307 & {\bf 453} & 2179 & 460 & - & 464 & - & - & 1468 & 541 & 1959 & 460 \\ \hline
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