All statistics are based on contigs of size >= 100 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly MG1_ets MG1_sjw MG2_ets MG2_sjw MG3_ets MG3_sjw MG5_ets MG5_sjw MG6_ets MG6_sjw MG7_ets MG7_sjw # contigs (>= 1000 bp) 606 547 89 562 6 41 1 15 557 516 254 840 # contigs (>= 5000 bp) 0 188 0 3 0 4 0 2 0 176 0 91 # contigs (>= 10000 bp) 0 59 0 1 0 1 0 1 0 63 0 19 # contigs (>= 25000 bp) 0 4 0 0 0 0 0 1 0 7 0 0 # contigs (>= 50000 bp) 0 0 0 0 0 0 0 0 0 0 0 0 Total length (>= 1000 bp) 861319 2632954 110660 916221 8079 84427 1641 63290 774643 2683652 327033 2347566 Total length (>= 5000 bp) 0 1786893 0 32648 0 36063 0 41916 0 1884960 0 705371 Total length (>= 10000 bp) 0 914195 0 19838 0 16729 0 34851 0 1092124 0 235749 Total length (>= 25000 bp) 0 114446 0 0 0 0 0 34851 0 232814 0 0 Total length (>= 50000 bp) 0 0 0 0 0 0 0 0 0 0 0 0 # contigs 3583 1108 2536 2521 815 1553 360 829 3773 1141 3397 1536 Largest contig 3728 29599 2384 19838 1663 16729 1641 34851 3345 40693 3200 18275 Total length 2476303 2913030 1269399 2013580 340712 807253 137630 411523 2521743 2990394 1928493 2744376 Reference length 3288122 3288122 3288122 3288122 3288122 3288122 3288122 3288122 3288122 3288122 3288122 3288122 GC (%) 54.84 54.33 54.93 54.62 54.89 54.25 54.52 52.90 54.68 54.47 54.93 54.15 Reference GC (%) 53.64 53.64 53.64 53.64 53.64 53.64 53.64 53.64 53.64 53.64 53.64 53.64 N50 776 6315 503 914 402 515 364 460 742 7245 595 2878 NG50 593 5449 - 510 - - - - 591 6191 378 2334 N75 512 2981 391 585 348 395 329 359 499 3060 431 1485 NG75 303 1573 - - - - - - 318 1878 - 797 L50 1039 129 895 658 324 518 152 259 1124 111 1107 272 LG50 1639 161 - 1591 - - - - 1703 133 2554 377 L75 2026 287 1612 1345 553 965 251 515 2157 268 2063 602 LG75 3550 416 - - - - - - 3593 361 - 972 # misassemblies 14 22 4 12 2 6 0 1 10 26 5 20 # misassembled contigs 14 22 4 11 2 6 0 1 9 26 5 19 Misassembled contigs length 12326 150519 2639 10841 943 3361 0 435 6219 143804 2899 54846 # local misassemblies 9 28 2 4 2 2 0 2 8 23 7 12 # scaffold gap ext. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # scaffold gap loc. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # unaligned mis. contigs 1 5 0 0 0 0 0 0 1 4 0 5 # unaligned contigs 11 + 15 part 18 + 89 part 6 + 4 part 13 + 30 part 2 + 4 part 8 + 14 part 2 + 2 part 6 + 16 part 14 + 21 part 18 + 88 part 8 + 10 part 12 + 87 part Unaligned length 22221 180144 5561 73493 6670 55401 3022 65488 23963 193752 11279 193127 Genome fraction (%) 67.717 77.085 36.143 56.662 9.388 21.753 3.764 10.034 67.689 77.739 53.946 73.988 Duplication ratio 1.102 1.078 1.063 1.041 1.082 1.051 1.088 1.049 1.122 1.094 1.081 1.049 # N's per 100 kbp 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 # mismatches per 100 kbp 1721.43 1906.57 1609.60 1773.80 1714.94 1797.90 1555.47 1591.21 1668.60 1849.58 1692.36 1817.88 # indels per 100 kbp 12.66 21.90 12.29 14.92 12.96 15.52 9.70 10.61 13.66 18.07 9.64 16.57 Largest alignment 3728 29599 2356 5824 1208 1554 689 1104 3339 40667 3155 18273 Total aligned length 2323404 2688911 1198992 1893840 309572 720371 124047 330569 2331645 2746350 1817072 2509451 NA50 707 5727 473 849 373 461 345 370 668 6403 556 2515 NGA50 521 5061 - 438 - - - - 508 5465 325 1929 NA75 444 2182 357 517 315 342 304 305 416 2251 384 1115 NGA75 - 877 - - - - - - - 1006 - 337 LA50 1102 138 941 724 357 634 166 415 1198 123 1167 305 LGA50 1769 173 - 1766 - - - - 1856 149 2774 427 LA75 2213 325 1719 1485 605 1143 272 723 2392 314 2217 711 LGA75 - 527 - - - - - - - 460 - 1343