All statistics are based on contigs of size >= 100 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly MG1_ets MG1_sjw MG2_ets MG2_sjw MG3_ets MG3_sjw MG5_ets MG5_sjw MG6_ets MG6_sjw MG7_ets MG7_sjw # contigs (>= 1000 bp) 576 1110 371 784 493 719 101 817 418 898 232 848 # contigs (>= 5000 bp) 0 197 0 175 0 218 0 44 0 174 0 184 # contigs (>= 10000 bp) 0 49 0 45 0 87 0 28 0 55 0 54 # contigs (>= 25000 bp) 0 10 0 10 0 16 0 13 0 9 0 11 # contigs (>= 50000 bp) 0 5 0 4 0 7 0 8 0 5 0 3 Total length (>= 1000 bp) 802853 4650409 490418 3646235 666577 4437855 127612 2935158 563718 3650642 289152 3404294 Total length (>= 5000 bp) 0 2680023 0 2190456 0 3282225 0 1485847 0 2047700 0 1943899 Total length (>= 10000 bp) 0 1686843 0 1319553 0 2339417 0 1384255 0 1245178 0 1063633 Total length (>= 25000 bp) 0 1078091 0 799594 0 1296948 0 1150445 0 561147 0 469684 Total length (>= 50000 bp) 0 915444 0 580112 0 1031573 0 1001634 0 428067 0 196256 # contigs 3770 3020 3691 2081 3684 1969 2633 1961 3966 2758 3671 2373 Largest contig 3771 370211 2871 329477 3249 248889 3098 193415 3793 115025 2434 67374 Total length 2503583 5600353 2237516 4280858 2377305 5056949 1331382 3602542 2424450 4561220 2055500 4147737 Reference length 2544614 2544614 2544614 2544614 2544614 2544614 2544614 2544614 2544614 2544614 2544614 2544614 GC (%) 32.80 32.40 33.09 31.78 32.99 32.34 32.96 33.11 33.21 32.15 32.87 32.34 Reference GC (%) 31.79 31.79 31.79 31.79 31.79 31.79 31.79 31.79 31.79 31.79 31.79 31.79 N50 743 4593 646 5117 708 8739 510 3014 653 4063 588 4497 NG50 734 19043 588 11335 672 25016 315 14379 631 9711 506 8261 N75 492 1624 460 2042 482 2937 389 1277 458 1405 430 1522 NG75 484 8309 397 5999 442 14053 - 2620 433 5546 341 5122 L50 1103 223 1172 166 1119 108 906 128 1234 226 1232 212 LG50 1131 19 1422 41 1240 16 2442 19 1328 58 1683 77 L75 2146 758 2205 485 2137 353 1657 610 2345 705 2260 614 LG75 2209 74 2743 123 2409 51 - 166 2547 148 3212 177 # misassemblies 37 79 19 60 26 66 19 46 28 75 22 77 # misassembled contigs 37 70 19 57 26 59 18 43 27 71 22 71 Misassembled contigs length 36555 242311 15341 316778 27322 348184 11603 72388 26864 307773 16355 271316 # local misassemblies 18 75 14 70 7 71 7 15 15 65 7 65 # scaffold gap ext. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # scaffold gap loc. mis. 0 0 0 0 0 0 0 0 0 0 0 0 # unaligned mis. contigs 9 72 8 53 14 47 3 16 10 63 7 49 # unaligned contigs 24 + 106 part 64 + 481 part 27 + 76 part 22 + 330 part 27 + 79 part 33 + 361 part 14 + 32 part 15 + 167 part 30 + 67 part 25 + 357 part 25 + 35 part 32 + 325 part Unaligned length 114655 2335169 80098 1497361 87779 2215743 35058 1639726 76354 1345110 41181 1154264 Genome fraction (%) 75.541 85.774 70.076 83.834 74.296 85.027 45.632 71.713 74.107 85.696 67.005 85.260 Duplication ratio 1.244 1.497 1.211 1.306 1.212 1.314 1.117 1.076 1.246 1.476 1.182 1.381 # N's per 100 kbp 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 # mismatches per 100 kbp 2035.36 2940.76 2047.47 2817.02 1924.77 2641.21 1654.65 1888.32 1914.33 2810.31 1888.13 2747.49 # indels per 100 kbp 37.90 62.62 32.88 57.27 34.14 64.01 24.65 37.18 31.73 58.60 30.22 58.48 Largest alignment 3633 18818 2819 33804 2929 31861 2087 5815 3286 18545 2377 33492 Total aligned length 2159738 3151238 1925737 2682118 2061107 2758824 1181760 1887279 2085516 3109043 1817120 2893964 NA50 595 401 526 883 584 395 439 355 532 902 498 1246 NGA50 584 3340 471 3579 546 5547 - 960 510 3709 419 3943 NA75 347 - 333 - 351 - 321 - 330 - 342 - NGA75 339 1644 154 1475 309 2048 - - 305 1716 - 1692 LA50 1289 1690 1362 666 1293 1097 1034 1582 1446 739 1373 545 LGA50 1323 218 1671 197 1441 133 - 706 1562 189 1908 184 LA75 2666 - 2692 - 2619 - 1924 - 2900 - 2621 - LGA75 2756 493 3525 461 2999 323 - - 3184 440 - 432