/gannet/Atumefaciens/20190327_metagenomics_pgen_megahit

Metagenomic assemblies of individual Panopea generosa water samples using Megahit, run on Mox.


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FILES

- 20190327_metagenomics_pgen_megahit.sh: SBATCH script to run job on Mox.

- fastq.list.txt: List of FastQ files used as inputs.

- MG1: Output folder for sample MG1 (pH=8.2)

- MG2: Output folder for sample MG2 (pH=8.2)

- MG3: Output folder for sample MG3 (pH=7.1)

- MG5: Output folder for sample MG5 (pH=8.2)

- MG6: Output folder for sample MG6 (pH=7.1)

- MG7: Output folder for sample MG7 (pH=7.1)

- slurm-716741.out: SLURM output file (i.e. stderr/stdout).

- system_path.log: List of Sam's Mox system $PATH contents.



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Notebook:

https://robertslab.github.io/sams-notebook/2019/03/27/Metagenome-Assemblies-P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox.html