/gannet/Atumefaciens/20190327_metagenomics_pgen_megahit/MG5/megahit_out

Metagenomic assemblies of individual Panopea generosa water samples using Megahit, run on Mox.

Output folder for Megahit assembly for sample MG5 (pH=8.2).

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FILES

- done: Empty file generated by Megahit.

- intermediate_contigs: Directory generated by Megahit.

- MG5.contigs.fa: FastA assembly.

- MG5.contigs.fa.fai: FastA index file (samtools faidx).

- MG5.log: Log file generated by Megahit.

- opts.txt: List of options used to run Megahit.


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Notebook:

https://robertslab.github.io/sams-notebook/2019/03/27/Metagenome-Assemblies-P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox.html