/gannet/Atumefaciens/20190327_metagenomics_pgen_megahit/MG3

Metagenomic assemblies of individual Panopea generosa water samples using Megahit, run on Mox.

Output folder for BBmap BBwrap sequencing alignments and coverage of sample MG3 (pH=7.1).

---
FILES

- megahit_out: Megahit output folder.

- MG3.aln.sam.gz: BBmap BBwrap alignment SAM file - gzipped. See SBATCH script in directory above for commands used to generate file.

- MG3.coverage.txt: BBmap pileup.sh coverage file generated from SAM file. See SBATCH script in directory above for commands used to generate file.

- ref: Genome reference directory created by BBmap.


---

Notebook:

https://robertslab.github.io/sams-notebook/2019/03/27/Metagenome-Assemblies-P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox.html