-1
/gscratch/srlab/sam/data/metagenomics/P_generosa/Library_Geoduck_MG_1_S3_L002_R1_001_val_1_val_1_val_1.fq.gz
-2
/gscratch/srlab/sam/data/metagenomics/P_generosa/Library_Geoduck_MG_1_S3_L002_R2_001_val_2_val_2_val_2.fq.gz
--num-cpu-threads
28
--out-prefix
MG1
MEGAHIT_TEMP_DIR: ./megahit_out/tmp/