/gannet/Atumefaciens/20190318_trinotate_geoduck_juvD5_RNAseq Annotation of geoduck Day 5 larval (mislabeled as juvenile) transcriptome assembly using Trinotate. Assembly done on 20190215: https://robertslab.github.io/sams-notebook/2019/02/15/Transcriptome-Assembly-Geoduck-Tissue-specific-Assembly-Juvenile.html Ran Trinotate on Mox. --- FILES - 20190318_trinotate_geoduck_juvD5_RNAseq.sh: SBATCH script to run job on Mox. - RNAmmer_out: Output directory of RNAmmer (identifies rRNA transcripts). - signalp_out: Output directory of singalP (predicts signal peptides). - slurm*.out: SLURM output files (i.e. stderr/stdout). - system_path.log: Contents of Sam's Mox system $PATH. - tmhmm_out: Output directory of tmHMM (predicts transmembrane regions). - trinotate_annotation_report.txt: Annotation table for Trinity contigs. First line of file contains column names that describes column contents. - Trinotate.sqlite: SQLite databse used by Trinotate to store and extract annotation data. --- Notebook: https://robertslab.github.io/sams-notebook/2019/03/18/Transcriptome-Annotation-Geoduck-Juvenile-Day-5-with-Trinotate-on-Mox.html