cvir_bsseq_all_pe_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 90400216 lines in total Total number of methylation call strings processed: 180800432 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1564663196 Total methylated C's in CpG context: 159187724 Total methylated C's in CHG context: 7202288 Total methylated C's in CHH context: 24250798 Total C to T conversions in CpG context: 52805909 Total C to T conversions in CHG context: 346029728 Total C to T conversions in CHH context: 975186749 C methylated in CpG context: 75.1% C methylated in CHG context: 2.0% C methylated in CHH context: 2.4%