cvir_bsseq_all_pe_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 43202905 lines in total Total number of methylation call strings processed: 86405810 Final Cytosine Methylation Report ================================= Total number of C's analysed: 741383072 Total methylated C's in CpG context: 77218636 Total methylated C's in CHG context: 3312185 Total methylated C's in CHH context: 11389298 Total C to T conversions in CpG context: 25885622 Total C to T conversions in CHG context: 165309594 Total C to T conversions in CHH context: 458267737 C methylated in CpG context: 74.9% C methylated in CHG context: 2.0% C methylated in CHH context: 2.4%