CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 816348 322719 71.67 1139067 2 907771 316038 74.18 1223809 3 859911 313224 73.30 1173135 4 825170 303401 73.12 1128571 5 831425 301557 73.38 1132982 6 832593 299288 73.56 1131881 7 860036 323536 72.66 1183572 8 858288 303482 73.88 1161770 9 854565 294908 74.34 1149473 10 891980 303135 74.64 1195115 11 903531 306028 74.70 1209559 12 898237 296945 75.15 1195182 13 908861 297550 75.34 1206411 14 910178 300710 75.17 1210888 15 911701 293810 75.63 1205511 16 921257 296067 75.68 1217324 17 916047 296692 75.54 1212739 18 911447 290905 75.81 1202352 19 916995 290424 75.95 1207419 20 915595 291909 75.83 1207504 21 917352 289687 76.00 1207039 22 921083 292009 75.93 1213092 23 921765 292258 75.93 1214023 24 919103 289838 76.03 1208941 25 928901 293830 75.97 1222731 26 921855 296177 75.68 1218032 27 911024 288002 75.98 1199026 28 918858 293681 75.78 1212539 29 910082 289734 75.85 1199816 30 901742 283516 76.08 1185258 31 913279 290372 75.88 1203651 32 907107 287204 75.95 1194311 33 896065 281635 76.09 1177700 34 906457 286433 75.99 1192890 35 891386 283218 75.89 1174604 36 882464 278253 76.03 1160717 37 878873 278394 75.94 1157267 38 875403 279031 75.83 1154434 39 866910 274980 75.92 1141890 40 868638 277117 75.81 1145755 41 849292 272107 75.74 1121399 42 833638 266174 75.80 1099812 43 830276 264387 75.85 1094663 44 827272 266645 75.62 1093917 45 811749 258493 75.85 1070242 46 812640 260921 75.70 1073561 47 804316 260781 75.52 1065097 48 785663 253254 75.62 1038917 49 782972 253137 75.57 1036109 50 769137 252105 75.31 1021242 51 745972 242224 75.49 988196 52 746707 241249 75.58 987956 53 737543 239318 75.50 976861 54 726616 236536 75.44 963152 55 726416 234902 75.56 961318 56 714032 233498 75.36 947530 57 707204 230263 75.44 937467 58 691204 226995 75.28 918199 59 676732 223235 75.20 899967 60 663633 218115 75.26 881748 61 657966 215135 75.36 873101 62 639688 211799 75.13 851487 63 627148 207875 75.11 835023 64 619297 204972 75.13 824269 65 606709 201980 75.02 808689 66 592524 196031 75.14 788555 67 585706 195102 75.01 780808 68 573697 191677 74.96 765374 69 558830 187779 74.85 746609 70 554152 186612 74.81 740764 71 540583 183162 74.69 723745 72 524599 178619 74.60 703218 73 514022 175789 74.52 689811 74 503186 173725 74.34 676911 75 484026 165228 74.55 649254 76 471582 161538 74.49 633120 77 451169 157390 74.14 608559 78 412994 144738 74.05 557732 79 334120 117036 74.06 451156 80 155965 55889 73.62 211854 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 119231 1787254 6.25 1906485 2 68599 1829103 3.61 1897702 3 64896 1891616 3.32 1956512 4 45683 1885277 2.37 1930960 5 51576 1831712 2.74 1883288 6 57258 1867627 2.97 1924885 7 42361 1892779 2.19 1935140 8 43242 1936607 2.18 1979849 9 38464 1899753 1.98 1938217 10 38084 1897567 1.97 1935651 11 38156 1903511 1.97 1941667 12 36129 1940769 1.83 1976898 13 36314 1911281 1.86 1947595 14 35492 1917095 1.82 1952587 15 34556 1968270 1.73 2002826 16 34359 1950355 1.73 1984714 17 35183 1929215 1.79 1964398 18 34316 1976994 1.71 2011310 19 33168 1950784 1.67 1983952 20 33293 1946141 1.68 1979434 21 32883 1975056 1.64 2007939 22 33549 1949029 1.69 1982578 23 34238 1960533 1.72 1994771 24 34869 1978012 1.73 2012881 25 33569 1951528 1.69 1985097 26 34651 1928293 1.77 1962944 27 33077 1975310 1.65 2008387 28 32825 1944737 1.66 1977562 29 34461 1948866 1.74 1983327 30 32765 1928698 1.67 1961463 31 32977 1931889 1.68 1964866 32 32674 1912859 1.68 1945533 33 33989 1925494 1.73 1959483 34 33513 1878476 1.75 1911989 35 32059 1864649 1.69 1896708 36 31232 1869878 1.64 1901110 37 31082 1830196 1.67 1861278 38 33376 1817039 1.80 1850415 39 30163 1844499 1.61 1874662 40 29585 1806192 1.61 1835777 41 30273 1786971 1.67 1817244 42 29132 1790471 1.60 1819603 43 28305 1750690 1.59 1778995 44 29093 1720033 1.66 1749126 45 28610 1742104 1.62 1770714 46 27821 1697729 1.61 1725550 47 29117 1677846 1.71 1706963 48 27755 1670470 1.63 1698225 49 27983 1642004 1.68 1669987 50 28323 1607430 1.73 1635753 51 28126 1616133 1.71 1644259 52 26788 1576292 1.67 1603080 53 26570 1552335 1.68 1578905 54 25559 1547969 1.62 1573528 55 25265 1521251 1.63 1546516 56 25619 1496371 1.68 1521990 57 24698 1499559 1.62 1524257 58 24007 1450608 1.63 1474615 59 25970 1427051 1.79 1453021 60 23538 1428886 1.62 1452424 61 23396 1378529 1.67 1401925 62 24485 1347692 1.78 1372177 63 22842 1346372 1.67 1369214 64 22186 1305577 1.67 1327763 65 22209 1282382 1.70 1304591 66 21693 1268589 1.68 1290282 67 20950 1238292 1.66 1259242 68 21203 1212303 1.72 1233506 69 20648 1195892 1.70 1216540 70 20089 1164336 1.70 1184425 71 21002 1145610 1.80 1166612 72 19439 1126516 1.70 1145955 73 18999 1094165 1.71 1113164 74 19102 1068237 1.76 1087339 75 19660 1059006 1.82 1078666 76 18681 1010597 1.81 1029278 77 17803 964794 1.81 982597 78 16523 894730 1.81 911253 79 13557 715521 1.86 729078 80 6388 337665 1.86 344053 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 280602 5279509 5.05 5560111 2 260126 5246994 4.72 5507120 3 230475 5345154 4.13 5575629 4 205182 5349165 3.69 5554347 5 206724 5246861 3.79 5453585 6 212714 5093581 4.01 5306295 7 184272 5130887 3.47 5315159 8 179127 5086861 3.40 5265988 9 186572 5159307 3.49 5345879 10 185329 5231587 3.42 5416916 11 176281 5127457 3.32 5303738 12 172759 5150082 3.25 5322841 13 176474 5223172 3.27 5399646 14 166029 5203053 3.09 5369082 15 167954 5273748 3.09 5441702 16 167816 5325848 3.05 5493664 17 163204 5272388 3.00 5435592 18 163224 5326484 2.97 5489708 19 164940 5367493 2.98 5532433 20 157714 5302906 2.89 5460620 21 161875 5320894 2.95 5482769 22 159632 5304484 2.92 5464116 23 154957 5286283 2.85 5441240 24 156342 5275251 2.88 5431593 25 151754 5295423 2.79 5447177 26 145604 5235953 2.71 5381557 27 144932 5236230 2.69 5381162 28 139647 5253329 2.59 5392976 29 135599 5159231 2.56 5294830 30 130006 5140346 2.47 5270352 31 128786 5236132 2.40 5364918 32 119021 5099331 2.28 5218352 33 120981 5051876 2.34 5172857 34 116724 5077988 2.25 5194712 35 107171 5031642 2.09 5138813 36 102401 5009086 2.00 5111487 37 101854 5003398 2.00 5105252 38 96387 4923882 1.92 5020269 39 94871 4914033 1.89 5008904 40 93738 4925625 1.87 5019363 41 90990 4856399 1.84 4947389 42 87842 4806080 1.79 4893922 43 87943 4803653 1.80 4891596 44 86166 4705286 1.80 4791452 45 85632 4657063 1.81 4742695 46 83961 4673457 1.76 4757418 47 84079 4595544 1.80 4679623 48 82285 4591264 1.76 4673549 49 82215 4580341 1.76 4662556 50 80563 4426578 1.79 4507141 51 81102 4375455 1.82 4456557 52 78015 4401297 1.74 4479312 53 76004 4251495 1.76 4327499 54 74179 4194406 1.74 4268585 55 74069 4173917 1.74 4247986 56 71917 4101927 1.72 4173844 57 72093 4084108 1.73 4156201 58 70494 4009238 1.73 4079732 59 74219 3953597 1.84 4027816 60 68580 3886277 1.73 3954857 61 68084 3817935 1.75 3886019 62 68357 3742134 1.79 3810491 63 66182 3706946 1.75 3773128 64 65147 3693088 1.73 3758235 65 64379 3580073 1.77 3644452 66 61991 3506861 1.74 3568852 67 61483 3477540 1.74 3539023 68 60555 3438766 1.73 3499321 69 59901 3368394 1.75 3428295 70 58687 3284125 1.76 3342812 71 59683 3205727 1.83 3265410 72 56540 3161278 1.76 3217818 73 55906 3070911 1.79 3126817 74 54781 2985062 1.80 3039843 75 56466 2906886 1.91 2963352 76 53893 2837447 1.86 2891340 77 50232 2701831 1.83 2752063 78 47291 2504837 1.85 2552128 79 39516 2040240 1.90 2079756 80 17132 926394 1.82 943526 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 528687 229527 69.73 758214 2 495073 182252 73.09 677325 3 457075 170076 72.88 627151 4 377605 156741 70.67 534346 5 370676 148093 71.45 518769 6 365383 145226 71.56 510609 7 369106 158895 69.91 528001 8 362882 138419 72.39 501301 9 359014 133174 72.94 492188 10 363461 134608 72.97 498069 11 359637 134056 72.85 493693 12 346046 127740 73.04 473786 13 342842 122290 73.71 465132 14 338615 120988 73.68 459603 15 332978 117220 73.96 450198 16 327667 113852 74.21 441519 17 316277 111708 73.90 427985 18 303105 105105 74.25 408210 19 295563 100008 74.72 395571 20 286683 97822 74.56 384505 21 281157 95490 74.65 376647 22 274433 92566 74.78 366999 23 268058 90788 74.70 358846 24 261835 87586 74.93 349421 25 258590 87177 74.79 345767 26 251091 84869 74.74 335960 27 241540 80840 74.92 322380 28 238259 80106 74.84 318365 29 230723 77326 74.90 308049 30 223328 74443 75.00 297771 31 221168 74030 74.92 295198 32 216699 72254 74.99 288953 33 209404 69727 75.02 279131 34 207877 69034 75.07 276911 35 199206 66643 74.93 265849 36 192671 63990 75.07 256661 37 188167 62918 74.94 251085 38 184588 61473 75.02 246061 39 179590 60467 74.81 240057 40 176675 59646 74.76 236321 41 167897 57462 74.50 225359 42 161651 54390 74.82 216041 43 159075 53503 74.83 212578 44 155230 52223 74.83 207453 45 150886 50385 74.97 201271 46 146646 50186 74.50 196832 47 143854 49901 74.25 193755 48 138196 46960 74.64 185156 49 135594 46012 74.66 181606 50 130549 45092 74.33 175641 51 125699 42560 74.71 168259 52 122647 42141 74.43 164788 53 119934 40927 74.56 160861 54 116755 39756 74.60 156511 55 114941 39438 74.45 154379 56 112089 38869 74.25 150958 57 110368 38413 74.18 148781 58 105199 36906 74.03 142105 59 102260 35380 74.30 137640 60 98315 34613 73.96 132928 61 96822 33720 74.17 130542 62 94159 32970 74.07 127129 63 91225 31761 74.18 122986 64 89502 30997 74.28 120499 65 85855 30285 73.92 116140 66 83244 29149 74.07 112393 67 80967 28582 73.91 109549 68 78930 28014 73.80 106944 69 75997 27123 73.70 103120 70 74595 26742 73.61 101337 71 72738 26437 73.34 99175 72 69894 25264 73.45 95158 73 67923 25138 72.99 93061 74 65623 24338 72.95 89961 75 63105 22997 73.29 86102 76 60899 22240 73.25 83139 77 57222 21566 72.63 78788 78 52770 20283 72.24 73053 79 45097 17592 71.94 62689 80 29590 12022 71.11 41612 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 97761 1227442 7.38 1325203 2 44156 1002707 4.22 1046863 3 51360 969268 5.03 1020628 4 24493 940570 2.54 965063 5 29465 841746 3.38 871211 6 40592 829811 4.66 870403 7 21181 840936 2.46 862117 8 23745 872428 2.65 896173 9 17888 793751 2.20 811639 10 17555 781918 2.20 799473 11 16668 775099 2.11 791767 12 14785 779718 1.86 794503 13 14151 757115 1.83 771266 14 13644 730035 1.83 743679 15 13286 732270 1.78 745556 16 12286 712132 1.70 724418 17 12150 679166 1.76 691316 18 11429 668496 1.68 679925 19 10803 639300 1.66 650103 20 10764 619330 1.71 630094 21 10150 611420 1.63 621570 22 9654 587366 1.62 597020 23 9868 580262 1.67 590130 24 9463 572119 1.63 581582 25 8870 546672 1.60 555542 26 8915 530162 1.65 539077 27 8800 529315 1.64 538115 28 8357 509585 1.61 517942 29 8374 503966 1.63 512340 30 7813 481472 1.60 489285 31 8062 473945 1.67 482007 32 7583 458807 1.63 466390 33 7649 454365 1.66 462014 34 6971 432629 1.59 439600 35 6892 420668 1.61 427560 36 6575 411970 1.57 418545 37 6477 395666 1.61 402143 38 6546 386612 1.66 393158 39 6168 383650 1.58 389818 40 5837 370488 1.55 376325 41 5967 362504 1.62 368471 42 5649 352866 1.58 358515 43 5420 339702 1.57 345122 44 5497 328050 1.65 333547 45 5192 325191 1.57 330383 46 4943 314183 1.55 319126 47 5064 306802 1.62 311866 48 4788 296672 1.59 301460 49 4585 288031 1.57 292616 50 4741 278706 1.67 283447 51 4441 275827 1.58 280268 52 4159 265706 1.54 269865 53 4290 257901 1.64 262191 54 4060 253231 1.58 257291 55 3959 246243 1.58 250202 56 3863 239868 1.58 243731 57 4131 238373 1.70 242504 58 3571 226790 1.55 230361 59 3597 220237 1.61 223834 60 3473 218750 1.56 222223 61 3641 206798 1.73 210439 62 3312 202679 1.61 205991 63 3276 199013 1.62 202289 64 3119 191522 1.60 194641 65 3111 186365 1.64 189476 66 2925 182515 1.58 185440 67 2900 176214 1.62 179114 68 2889 171386 1.66 174275 69 2799 167054 1.65 169853 70 2669 163028 1.61 165697 71 2814 157738 1.75 160552 72 2488 154112 1.59 156600 73 2458 149536 1.62 151994 74 2470 144394 1.68 146864 75 2285 142006 1.58 144291 76 2244 134755 1.64 136999 77 2151 127978 1.65 130129 78 1963 118932 1.62 120895 79 1648 102013 1.59 103661 80 1143 67595 1.66 68738 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 198863 3755306 5.03 3954169 2 154037 2941898 4.98 3095935 3 108269 2772619 3.76 2880888 4 79704 2622267 2.95 2701971 5 86364 2510023 3.33 2596387 6 104753 2346654 4.27 2451407 7 63189 2321576 2.65 2384765 8 63435 2266168 2.72 2329603 9 62436 2272650 2.67 2335086 10 58647 2247466 2.54 2306113 11 53446 2157215 2.42 2210661 12 47910 2128774 2.20 2176684 13 46031 2125604 2.12 2171635 14 43390 2082085 2.04 2125475 15 41932 2072153 1.98 2114085 16 39010 2038796 1.88 2077806 17 36725 1966451 1.83 2003176 18 34332 1920339 1.76 1954671 19 32974 1859354 1.74 1892328 20 31012 1794967 1.70 1825979 21 30295 1756150 1.70 1786445 22 28540 1697277 1.65 1725817 23 28121 1660959 1.66 1689080 24 26791 1616401 1.63 1643192 25 26287 1582376 1.63 1608663 26 25378 1535950 1.63 1561328 27 25942 1500687 1.70 1526629 28 23869 1467556 1.60 1491425 29 23284 1419778 1.61 1443062 30 22601 1383174 1.61 1405775 31 23698 1380170 1.69 1403868 32 21683 1313050 1.62 1334733 33 22216 1277460 1.71 1299676 34 20665 1259445 1.61 1280110 35 20552 1225568 1.65 1246120 36 19751 1201185 1.62 1220936 37 19583 1173792 1.64 1193375 38 18730 1135794 1.62 1154524 39 18346 1111071 1.62 1129417 40 17609 1092702 1.59 1110311 41 17722 1062045 1.64 1079767 42 16726 1028770 1.60 1045496 43 16615 1011686 1.62 1028301 44 16288 975592 1.64 991880 45 15793 949969 1.64 965762 46 15779 940653 1.65 956432 47 15386 914309 1.65 929695 48 15096 906634 1.64 921730 49 14690 891602 1.62 906292 50 14171 842739 1.65 856910 51 13814 822591 1.65 836405 52 13730 821446 1.64 835176 53 13122 774747 1.67 787869 54 12875 754469 1.68 767344 55 12525 744365 1.65 756890 56 11919 722588 1.62 734507 57 12830 714543 1.76 727373 58 11674 686744 1.67 698418 59 11503 680112 1.66 691615 60 10802 652979 1.63 663781 61 11289 631846 1.76 643135 62 10300 616596 1.64 626896 63 10409 604714 1.69 615123 64 10247 601454 1.68 611701 65 9964 572022 1.71 581986 66 9352 555415 1.66 564767 67 9350 547359 1.68 556709 68 9190 543115 1.66 552305 69 9182 528528 1.71 537710 70 8629 507884 1.67 516513 71 8644 493602 1.72 502246 72 8367 485601 1.69 493968 73 7881 462132 1.68 470013 74 7593 445938 1.67 453531 75 7403 433461 1.68 440864 76 7305 419685 1.71 426990 77 6919 401547 1.69 408466 78 6337 372793 1.67 379130 79 5487 328326 1.64 333813 80 3636 217415 1.64 221051