/gscratch/scrubbed/samwhite/outputs/20190312_cvir_gonad_bismark/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/outputs/20190312_cvir_gonad_bismark/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 06:42 on 2019-04-11
Alignment
Sequence pairs analysed in total
137957136
Paired-end alignments with a unique best hit
43202908
Pairs without alignments under any condition
73583711
Pairs that did not map uniquely
21170517
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
1164865379
Methylated C's in CpG context
122873598
Methylated C's in CHG context
5054655
Methylated C's in CHH context
18234442
Methylated C's in Unknown context
674287
Unmethylated C's in CpG context
40470898
Unmethylated C's in CHG context
261834434
Unmethylated C's in CHH context
716397352
Unmethylated C's in Unknown context
3802925
Percentage methylation (CpG context)
75.2%
Percentage methylation (CHG context)
1.9%
Percentage methylation (CHH context)
2.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
10889831
original top strand
CTOT
10680012
complementary to original top strand
CTOB
10709675
complementary to original bottom strand
OB
10923387
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions