cvir_bsseq_all_pe_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5070163 lines in total Total number of methylation call strings processed: 10140326 Final Cytosine Methylation Report ================================= Total number of C's analysed: 93320505 Total methylated C's in CpG context: 9721447 Total methylated C's in CHG context: 447813 Total methylated C's in CHH context: 1350353 Total C to T conversions in CpG context: 3606430 Total C to T conversions in CHG context: 20802469 Total C to T conversions in CHH context: 57391993 C methylated in CpG context: 72.9% C methylated in CHG context: 2.1% C methylated in CHH context: 2.3%