CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 94241 41160 69.60 135401 2 103367 40976 71.61 144343 3 100628 40417 71.34 141045 4 99393 39236 71.70 138629 5 99270 39138 71.72 138408 6 99544 38829 71.94 138373 7 102828 42051 70.98 144879 8 102820 39228 72.38 142048 9 100911 37926 72.68 138837 10 105756 39017 73.05 144773 11 106420 39588 72.89 146008 12 106677 38381 73.54 145058 13 107065 38781 73.41 145846 14 108697 39690 73.25 148387 15 109231 38295 74.04 147526 16 110237 38726 74.00 148963 17 109275 38972 73.71 148247 18 108391 38247 73.92 146638 19 108979 37521 74.39 146500 20 108588 38271 73.94 146859 21 108985 37828 74.23 146813 22 109917 38138 74.24 148055 23 109696 38393 74.07 148089 24 109869 37995 74.30 147864 25 110530 38712 74.06 149242 26 110362 39011 73.88 149373 27 107721 37996 73.92 145717 28 109564 38857 73.82 148421 29 108907 38097 74.08 147004 30 108066 37218 74.38 145284 31 109159 38511 73.92 147670 32 109343 37697 74.36 147040 33 107659 37508 74.16 145167 34 109415 38151 74.15 147566 35 107325 37753 73.98 145078 36 106341 37050 74.16 143391 37 106046 37120 74.07 143166 38 106092 37422 73.92 143514 39 105666 36981 74.08 142647 40 105891 37307 73.95 143198 41 103888 36895 73.79 140783 42 101695 36039 73.83 137734 43 102316 35881 74.04 138197 44 101119 36106 73.69 137225 45 99702 35037 74.00 134739 46 100508 35821 73.72 136329 47 99166 35911 73.41 135077 48 98147 34854 73.79 133001 49 97388 34612 73.78 132000 50 95741 34592 73.46 130333 51 93372 33392 73.66 126764 52 93844 33321 73.80 127165 53 93119 33101 73.78 126220 54 91456 32792 73.61 124248 55 91576 32641 73.72 124217 56 90811 32348 73.73 123159 57 89759 32221 73.59 121980 58 87868 31933 73.34 119801 59 85990 31330 73.30 117320 60 84406 30900 73.20 115306 61 84393 30753 73.29 115146 62 82075 29958 73.26 112033 63 80931 29598 73.22 110529 64 79513 29079 73.22 108592 65 78650 28866 73.15 107516 66 76839 28070 73.24 104909 67 76205 28165 73.01 104370 68 74778 27523 73.10 102301 69 72294 27275 72.61 99569 70 72520 27366 72.60 99886 71 70852 26831 72.53 97683 72 68319 26108 72.35 94427 73 67401 25754 72.35 93155 74 66421 25461 72.29 91882 75 63803 24351 72.38 88154 76 61939 23877 72.18 85816 77 59089 23191 71.81 82280 78 54486 21083 72.10 75569 79 43899 17018 72.06 60917 80 19656 7749 71.72 27405 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11657 212821 5.19 224478 2 7874 217448 3.49 225322 3 7083 223426 3.07 230509 4 5793 223549 2.53 229342 5 6397 217346 2.86 223743 6 6637 221864 2.90 228501 7 5452 224210 2.37 229662 8 5635 228500 2.41 234135 9 5050 225617 2.19 230667 10 5163 223913 2.25 229076 11 5243 225030 2.28 230273 12 4885 228486 2.09 233371 13 4785 226437 2.07 231222 14 4831 226221 2.09 231052 15 4750 233342 2.00 238092 16 4596 231326 1.95 235922 17 4576 227954 1.97 232530 18 4481 233885 1.88 238366 19 4495 231457 1.91 235952 20 4377 230091 1.87 234468 21 4318 233136 1.82 237454 22 4420 231025 1.88 235445 23 4500 231683 1.91 236183 24 4371 235029 1.83 239400 25 4375 231444 1.86 235819 26 4380 228826 1.88 233206 27 4417 234750 1.85 239167 28 4324 231273 1.84 235597 29 4480 232214 1.89 236694 30 4461 229828 1.90 234289 31 4310 230952 1.83 235262 32 4362 228469 1.87 232831 33 4347 230832 1.85 235179 34 4236 226802 1.83 231038 35 4366 223669 1.91 228035 36 4268 224818 1.86 229086 37 4275 220083 1.91 224358 38 4446 218936 1.99 223382 39 4142 222890 1.82 227032 40 4105 220010 1.83 224115 41 4129 217693 1.86 221822 42 3887 219162 1.74 223049 43 3940 213782 1.81 217722 44 4077 210203 1.90 214280 45 3982 213873 1.83 217855 46 3892 208745 1.83 212637 47 3912 207594 1.85 211506 48 3820 206278 1.82 210098 49 3812 203420 1.84 207232 50 4521 198987 2.22 203508 51 3871 201403 1.89 205274 52 3857 196883 1.92 200740 53 3754 194169 1.90 197923 54 3621 194400 1.83 198021 55 3673 191231 1.88 194904 56 3615 188910 1.88 192525 57 3496 189856 1.81 193352 58 3377 184019 1.80 187396 59 3521 181899 1.90 185420 60 3351 182165 1.81 185516 61 3365 175674 1.88 179039 62 3383 172238 1.93 175621 63 3220 172920 1.83 176140 64 3233 169389 1.87 172622 65 3191 165535 1.89 168726 66 3138 164804 1.87 167942 67 3093 160736 1.89 163829 68 3118 157697 1.94 160815 69 2961 156430 1.86 159391 70 2984 152467 1.92 155451 71 2913 150433 1.90 153346 72 2881 148586 1.90 151467 73 2829 144493 1.92 147322 74 2896 140694 2.02 143590 75 2750 139998 1.93 142748 76 2565 134313 1.87 136878 77 2664 127234 2.05 129898 78 2402 116801 2.02 119203 79 1983 92854 2.09 94837 80 895 42272 2.07 43167 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 29814 633228 4.50 663042 2 27608 628010 4.21 655618 3 23958 636296 3.63 660254 4 21841 635734 3.32 657575 5 21555 618872 3.37 640427 6 21617 606179 3.44 627796 7 19051 609745 3.03 628796 8 18752 603793 3.01 622545 9 18933 611424 3.00 630357 10 18764 619954 2.94 638718 11 17804 606256 2.85 624060 12 17286 606348 2.77 623634 13 17193 616721 2.71 633914 14 16878 609925 2.69 626803 15 16787 617777 2.65 634564 16 16283 624064 2.54 640347 17 16202 615787 2.56 631989 18 15840 623450 2.48 639290 19 16037 628711 2.49 644748 20 15411 620397 2.42 635808 21 15762 624937 2.46 640699 22 15569 622456 2.44 638025 23 15226 619209 2.40 634435 24 15016 620463 2.36 635479 25 15088 620221 2.37 635309 26 14592 614610 2.32 629202 27 14436 616218 2.29 630654 28 14112 618651 2.23 632763 29 14202 608279 2.28 622481 30 13587 608553 2.18 622140 31 13725 620774 2.16 634499 32 13179 605812 2.13 618991 33 12784 602404 2.08 615188 34 12700 605905 2.05 618605 35 12673 601488 2.06 614161 36 12139 600017 1.98 612156 37 12128 600860 1.98 612988 38 11808 592113 1.96 603921 39 11647 591678 1.93 603325 40 11795 594701 1.94 606496 41 11395 585014 1.91 596409 42 11118 583094 1.87 594212 43 11145 583643 1.87 594788 44 10928 573121 1.87 584049 45 10819 568919 1.87 579738 46 10785 570911 1.85 581696 47 10750 563560 1.87 574310 48 10733 564912 1.86 575645 49 10658 564209 1.85 574867 50 12070 542556 2.18 554626 51 10298 544485 1.86 554783 52 10313 544498 1.86 554811 53 10196 528439 1.89 538635 54 9874 522490 1.85 532364 55 9938 521513 1.87 531451 56 9597 513785 1.83 523382 57 9655 513737 1.84 523392 58 9454 505152 1.84 514606 59 9516 500618 1.87 510134 60 9298 491675 1.86 500973 61 9289 485815 1.88 495104 62 9046 476493 1.86 485539 63 9132 474082 1.89 483214 64 9046 473251 1.88 482297 65 8703 459998 1.86 468701 66 8563 451400 1.86 459963 67 8502 448742 1.86 457244 68 8401 444689 1.85 453090 69 8392 435192 1.89 443584 70 8052 425526 1.86 433578 71 7993 417293 1.88 425286 72 7872 411837 1.88 419709 73 7747 401372 1.89 409119 74 7729 389697 1.94 397426 75 7491 381555 1.93 389046 76 7417 372651 1.95 380068 77 7178 353034 1.99 360212 78 6531 325078 1.97 331609 79 5660 261598 2.12 267258 80 2422 114107 2.08 116529 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 66354 31410 67.87 97764 2 61341 26164 70.10 87505 3 57102 24166 70.26 81268 4 51562 22532 69.59 74094 5 50618 21358 70.33 71976 6 49768 21375 69.95 71143 7 50198 22681 68.88 72879 8 48890 20345 70.61 69235 9 47792 19594 70.92 67386 10 48778 19659 71.27 68437 11 48697 19332 71.58 68029 12 46247 18544 71.38 64791 13 46462 17975 72.10 64437 14 46091 18095 71.81 64186 15 45427 17328 72.39 62755 16 44826 16921 72.60 61747 17 43119 16744 72.03 59863 18 41605 16082 72.12 57687 19 41144 15414 72.75 56558 20 39855 15158 72.45 55013 21 39203 14840 72.54 54043 22 37935 14295 72.63 52230 23 37750 14207 72.66 51957 24 36891 13744 72.86 50635 25 36502 13550 72.93 50052 26 35293 13387 72.50 48680 27 33932 12680 72.80 46612 28 33740 12541 72.90 46281 29 32730 12298 72.69 45028 30 31592 11943 72.57 43535 31 31546 11914 72.59 43460 32 30438 11359 72.82 41797 33 29838 11145 72.81 40983 34 29712 11358 72.34 41070 35 28427 10666 72.72 39093 36 27592 10126 73.15 37718 37 26784 10336 72.16 37120 38 26313 10032 72.40 36345 39 25834 9755 72.59 35589 40 25646 9616 72.73 35262 41 24089 9357 72.02 33446 42 23105 8952 72.07 32057 43 23125 8632 72.82 31757 44 22536 8602 72.37 31138 45 21606 8340 72.15 29946 46 21285 8338 71.85 29623 47 20770 8230 71.62 29000 48 20150 7720 72.30 27870 49 19703 7656 72.02 27359 50 19116 7386 72.13 26502 51 18156 7074 71.96 25230 52 18097 7067 71.92 25164 53 17624 6906 71.85 24530 54 17156 6638 72.10 23794 55 16733 6454 72.17 23187 56 16449 6518 71.62 22967 57 16139 6324 71.85 22463 58 15642 6164 71.73 21806 59 15013 5965 71.57 20978 60 14536 5831 71.37 20367 61 14138 5689 71.31 19827 62 13809 5530 71.40 19339 63 13463 5377 71.46 18840 64 13043 5126 71.79 18169 65 12722 5051 71.58 17773 66 12059 4852 71.31 16911 67 11834 4887 70.77 16721 68 11551 4761 70.81 16312 69 11307 4608 71.05 15915 70 10967 4547 70.69 15514 71 10928 4419 71.21 15347 72 10308 4293 70.60 14601 73 10243 4285 70.51 14528 74 9798 4199 70.00 13997 75 9368 3958 70.30 13326 76 9102 3787 70.62 12889 77 8469 3616 70.08 12085 78 7752 3494 68.93 11246 79 6711 3025 68.93 9736 80 4465 2105 67.96 6570 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9962 156390 5.99 166352 2 5565 132091 4.04 137656 3 5436 129256 4.04 134692 4 3496 121971 2.79 125467 5 3911 114051 3.32 117962 6 4655 112834 3.96 117489 7 2972 113331 2.56 116303 8 3090 114735 2.62 117825 9 2640 107053 2.41 109693 10 2629 105891 2.42 108520 11 2414 104314 2.26 106728 12 2281 103504 2.16 105785 13 2148 100641 2.09 102789 14 2063 98540 2.05 100603 15 2118 99160 2.09 101278 16 1969 96655 2.00 98624 17 1869 92905 1.97 94774 18 1815 92206 1.93 94021 19 1743 89160 1.92 90903 20 1697 85860 1.94 87557 21 1599 85127 1.84 86726 22 1541 82205 1.84 83746 23 1601 81099 1.94 82700 24 1583 80379 1.93 81962 25 1503 77268 1.91 78771 26 1458 74986 1.91 76444 27 1443 75265 1.88 76708 28 1426 72130 1.94 73556 29 1416 71985 1.93 73401 30 1304 68843 1.86 70147 31 1212 67539 1.76 68751 32 1287 65385 1.93 66672 33 1160 64729 1.76 65889 34 1178 62181 1.86 63359 35 1083 60252 1.77 61335 36 1117 59379 1.85 60496 37 1075 56893 1.85 57968 38 1043 55475 1.85 56518 39 1055 55345 1.87 56400 40 935 53959 1.70 54894 41 1000 52288 1.88 53288 42 959 50913 1.85 51872 43 903 49567 1.79 50470 44 919 47293 1.91 48212 45 860 47215 1.79 48075 46 822 45521 1.77 46343 47 843 44606 1.85 45449 48 803 43403 1.82 44206 49 722 42210 1.68 42932 50 814 41019 1.95 41833 51 754 39971 1.85 40725 52 672 39211 1.68 39883 53 743 37583 1.94 38326 54 677 37057 1.79 37734 55 630 36294 1.71 36924 56 674 35201 1.88 35875 57 667 35359 1.85 36026 58 605 33633 1.77 34238 59 573 32615 1.73 33188 60 565 32167 1.73 32732 61 601 31025 1.90 31626 62 554 29909 1.82 30463 63 532 29340 1.78 29872 64 540 28643 1.85 29183 65 515 27550 1.84 28065 66 483 27024 1.76 27507 67 508 26099 1.91 26607 68 496 25328 1.92 25824 69 468 24890 1.85 25358 70 455 24449 1.83 24904 71 474 23573 1.97 24047 72 415 23108 1.76 23523 73 427 22331 1.88 22758 74 423 21682 1.91 22105 75 402 21326 1.85 21728 76 415 20001 2.03 20416 77 360 19245 1.84 19605 78 349 17640 1.94 17989 79 261 15264 1.68 15525 80 203 10112 1.97 10315 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24383 482538 4.81 506921 2 18982 393570 4.60 412552 3 14345 371861 3.71 386206 4 11850 352602 3.25 364452 5 12030 336597 3.45 348627 6 12733 320918 3.82 333651 7 9024 315474 2.78 324498 8 8856 307565 2.80 316421 9 8497 307101 2.69 315598 10 7965 304608 2.55 312573 11 7487 292682 2.49 300169 12 6854 287867 2.33 294721 13 6657 285846 2.28 292503 14 6387 279160 2.24 285547 15 5948 276397 2.11 282345 16 5630 273344 2.02 278974 17 5340 263365 1.99 268705 18 5115 260481 1.93 265596 19 4922 254811 1.90 259733 20 4645 246029 1.85 250674 21 4622 241414 1.88 246036 22 4331 234765 1.81 239096 23 4365 228760 1.87 233125 24 3970 223738 1.74 227708 25 3944 218581 1.77 222525 26 3937 212232 1.82 216169 27 3836 208851 1.80 212687 28 3654 204546 1.76 208200 29 3469 197804 1.72 201273 30 3519 193113 1.79 196632 31 3419 193303 1.74 196722 32 3303 184557 1.76 187860 33 3247 179376 1.78 182623 34 3193 177162 1.77 180355 35 3083 172627 1.75 175710 36 3022 169315 1.75 172337 37 2988 166002 1.77 168990 38 2796 160688 1.71 163484 39 2840 156998 1.78 159838 40 2746 155169 1.74 157915 41 2722 150286 1.78 153008 42 2565 146284 1.72 148849 43 2579 143627 1.76 146206 44 2508 139176 1.77 141684 45 2448 135052 1.78 137500 46 2406 134203 1.76 136609 47 2266 130856 1.70 133122 48 2234 129694 1.69 131928 49 2249 127419 1.73 129668 50 2233 120851 1.81 123084 51 2127 118845 1.76 120972 52 2080 117473 1.74 119553 53 2068 111895 1.81 113963 54 1937 108721 1.75 110658 55 1915 107803 1.75 109718 56 1825 104284 1.72 106109 57 1880 103517 1.78 105397 58 1770 99531 1.75 101301 59 1743 98188 1.74 99931 60 1623 94654 1.69 96277 61 1675 92731 1.77 94406 62 1635 89559 1.79 91194 63 1653 87937 1.85 89590 64 1620 87238 1.82 88858 65 1492 83431 1.76 84923 66 1458 80824 1.77 82282 67 1416 79987 1.74 81403 68 1414 78984 1.76 80398 69 1495 76919 1.91 78414 70 1296 73981 1.72 75277 71 1256 71733 1.72 72989 72 1268 70600 1.76 71868 73 1211 68031 1.75 69242 74 1138 65578 1.71 66716 75 1124 63628 1.74 64752 76 1159 61898 1.84 63057 77 1092 58893 1.82 59985 78 975 54772 1.75 55747 79 818 47671 1.69 48489 80 558 31661 1.73 32219